BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22470.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329375 jgi|Araly1|329375|fgenesh1_pm.C_scaffold_7001602 1057 0.0
> Ahg329375 jgi|Araly1|329375|fgenesh1_pm.C_scaffold_7001602
Length=1128
Score = 1057 bits (572), Expect = 0.0
Identities = 979/1164 (84%), Gaps = 74/1164 (6%)
Strand=Plus/Plus
Query 1 ATCAAGAATGGCCTCAACTACTATAATCCTTTTCCTCTCATTCAGCATCATTCCATTACT 60
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||
Sbjct 6 ATCAAGAATGGCCTCAACTACTATAATCATTTTTCTCTCATTCAGCATTATTCCATTACT 65
Query 61 CACCATCGTTAGAGCAGATAACCATTCCGTTTACTGCCCTCCACCACCACCTTGTATTTG 120
|||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||
Sbjct 66 CACCATCGTTAGAGCACATAACCATTCTGTCCATTGCCCTCCACCACCACCTTGTATTTG 125
Query 121 TATTTGTAAT-CCGGGACCACCTCCGCCGCAACCCGATCCCCAACCGCCAACT-CCACCA 178
|||||||||| || | ||||||||||| | | || || |||| ||||| ||| || ||
Sbjct 126 TATTTGTAATCCCACG-CCACCTCCGCCACCATCCAATACCCAGCCGCC-ACTGCC-GCA 182
Query 179 A--C-AT-TTCAACCAG-CACCGCCAGCC-A-ATGaccaaccaccgcctcca-ccaca-g 229
| | || ||||| | || | ||| || | || |||||| | || ||| ||| | |
Sbjct 183 ACCCGATCCACAACC-GCCAACTCCA-CCAACAT-TTCAACCAGCACCGCCACCCA-ATG 238
Query 230 agcacatcaccacctccag-tagc-gaccacaccaccagcacTTCCTCCA-AAACCCTTA 286
| || | |||| ||||| | | | ||||||||||||| | | ||| | | | || |
Sbjct 239 ACCA-ACCACCGCCTCC-GCCA-CAGACCACACCACCA-C-C-TCCACTAGCGA-CC--A 289
Query 287 CCGCCACCGTTGTC-TCCTCCGCAAa-cc--a-caccacc--t-cctccaccagctatta 338
| |||||| | |||||| ||| || | ||||||| | |||| ||| | | |
Sbjct 290 -CACCACCG-CCACTTCCTCC-AAAAGCCTTACCACCACCGTTGTCTCCTCCA-C-A-AA 343
Query 339 caccaccacctccaccagctattacacctccactatcacctcctccaccagctatta-c- 396
|| | ||||||| ||| | | || | | |||| ||||||| ||| ||| ||| |
Sbjct 344 CAATAACACCTCCTCCA-CCAGTA-A--T-CACT-CCACCTCCGCCA--GGCT-TTAGCT 394
Query 397 -accac-cacc-tccactagcgaccacaccaccGGCACTTCCTCC-AAAACCCTTACCGC 452
|| | ||| | ||| | | | | |||||||| |||||||||| ||| ||||| |
Sbjct 395 GTCC-CGGACCAT-CACCAACAATCTCACCACCGCCACTTCCTCCGCAAA-CCTTA---C 448
Query 453 CACCGTTGTCTCCTCCACAAACCACGCCACCTCCTCCACCAGC-AATCACACCACCACTA 511
|||| | |||| |||||||| || ||||||||||||||||| | | ||||||||||||
Sbjct 449 CACC---GCCTCCGCCACAAACGACACCACCTCCTCCACCAGCTACT-ACACCACCACTA 504
Query 512 TCACCTCCTCTGGTTGGAATATGTTCCAAGAATGATACCGAACTAAAGATATGTGCCGGA 571
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 505 TCACCTCCTCTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTGCC-GA 563
Query 572 -ATTCTAGCAATTAGTGACGGTCTTCTAACCACTGGAAGAGCAGAACCATGTTGTTCCAT 630
|||||||||||||||| | || || |||| |||||||||||||| ||||||||||||||
Sbjct 564 GATTCTAGCAATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTTCCAT 623
Query 631 CATCCGAAATGTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAATCGGTAGGAGCACC 690
| |||| ||| | |||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 624 CGTCCGTAATATCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCA-C 682
Query 691 A-CGTTTTTCCCTCTCTCCCAATTTCGGCATCTTCTTTAAAGTTTGTGGTCGTAGGATTC 749
| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 683 AGCGTTTTTCTCTCTCTCCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGATTC 742
Query 750 CACAAGGCTTTAGCTGTCCCGGTCCATCACCAACAATCTCACCACCACCACTTCCTCCAC 809
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 743 CACAAGGCTTTAGCTGTCCTGGACCATCACCAACAATCTCACCCCCACCACTTCCTCCAC 802
Query 810 AAACTTTAAAACCGCCTCCGCCACAAACAACACCACCTCCTCCACCAGCTATTACACCAC 869
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 803 AAACTTTACCACCGCCTCCGCCACAAACAACACCACCTCCTCCACCAGCTACTACACCAC 862
Query 870 CACTATCACCTCCTCTAGTTGGCATATGCTCCAAGAATGATACCGAACTAAAGATATGTG 929
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 863 CACTATCACCTCCTCTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTG 922
Query 930 CCGGAATTCTAGCAATTAGTGACGGCCTTCTAACCACTGGTAGGGCAGAGCCATGTTGTT 989
||| |||| |||||||||||| | | || |||| ||||| || ||||||||||||||||
Sbjct 923 CCGAAATTTTAGCAATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTT 982
Query 990 CCATCGTACGTAATGTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAG 1049
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 983 CCATCGTCCGTAATGTCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAG 1042
Query 1050 CAAGACGTTTTTCCCTCTCTCCCAATTTTGGCATCTTCTTTAAGGTTTGTGGTCGCAGGA 1109
|| | ||||| || |||||||||||||| |||| ||||||||| ||||||||||| ||||
Sbjct 1043 CACGGCGTTTCTCTCTCTCTCCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGA 1102
Query 1110 TTCCACAAGGCTTTAGCTGCCCAT 1133
||||||||||||||||||||||||
Sbjct 1103 TTCCACAAGGCTTTAGCTGCCCAT 1126
Score = 521 bits (282), Expect = 4e-147
Identities = 356/391 (91%), Gaps = 7/391 (2%)
Strand=Plus/Plus
Query 754 AGGCTTTAGCTGTCCCGGTCCATCACCAACAATCTCACCACCACCACTTCCTCCACAAAC 813
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 384 AGGCTTTAGCTGTCCCGGACCATCACCAACAATCTCACCACCGCCACTTCCTCCGCAAAC 443
Query 814 TTTAAAACCGCCTCCGCCACAAACAACACCACCTCCTCCACCAGCTATTACACCACCACT 873
||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 444 CTTACCACCGCCTCCGCCACAAACGACACCACCTCCTCCACCAGCTACTACACCACCACT 503
Query 874 ATCACCTCCTCTAGTTGGCATATGCTCCAAGAATGATACCGAACTAAAGATATGTGCCGG 933
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 504 ATCACCTCCTCTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTGCC-G 562
Query 934 A-ATTCTAGCAATTAGTGACGGCCTTCTAACCACTGGTAGGGCAGAGCCATGTTGTTCCA 992
| |||||||||||||||| | | || |||| ||||| || |||||||||||||||||||
Sbjct 563 AGATTCTAGCAATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTTCCA 622
Query 993 TCGTACGTAATGTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCA- 1051
|||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCGTCCGTAATATCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCAC 682
Query 1052 AGACGTTTTTCCCTCTCTCCCAATTTTGGCATCTTCTTTAAGGTTTGTGGTCGCAGGATT 1111
|| |||||||| |||||||||||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 683 AG-CGTTTTTCTCTCTCTCCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGATT 741
Query 1112 CCACAAGGCTTTAGCTGCCCATGATGACCAT 1142
||||||||||||||||| || || ||||||
Sbjct 742 CCACAAGGCTTTAGCTGTCC-TG--GACCAT 769
Score = 412 bits (223), Expect = 2e-114
Identities = 281/309 (91%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 462 CTCCTCCACAAACCACGCCACCTCCTCCACCAGC-AATCACACCACCACTATCACCTCCT 520
|||| |||||||| || ||||||||||||||||| | | |||||||||||||||||||||
Sbjct 818 CTCCGCCACAAACAACACCACCTCCTCCACCAGCTACT-ACACCACCACTATCACCTCCT 876
Query 521 CTGGTTGGAATATGTTCCAAGAATGATACCGAACTAAAGATATGTGCCGGAATTCTAGCA 580
|||||||| | ||| |||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 877 CTGGTTGGCACATGCTCCAAGAATGATACCGAACTAAAGATATGTGCCGAAATTTTAGCA 936
Query 581 ATTAGTGACGGTCTTCTAACCACTGGAAGAGCAGAACCATGTTGTTCCATCATCCGAAAT 640
||||||| | || || |||| |||||||||||||| ||||||||||||||| |||| |||
Sbjct 937 ATTAGTGGCAGTGTTATAACTACTGGAAGAGCAGAGCCATGTTGTTCCATCGTCCGTAAT 996
Query 641 GTGTCTGATCTTGATGCAGTTACTTGTTTTTGTAAATCGGTAGGAGCACCACGTTTTTCC 700
|| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 997 GTCTCTGATGTTGATGCAGTTACTTGTTTTTGTAAGTCGGTAGGAGCACGGCGTTTCTCT 1056
Query 701 CTCTCTCCCAATTTCGGCATCTTCTTTAAAGTTTGTGGTCGTAGGATTCCACAAGGCTTT 760
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CTCTCTCCCAATTTCGGCAACTTCTTTAAAGTTTGTGGTCGTAGGATTCCACAAGGCTTT 1116
Query 761 AGCTGTCCC 769
||||| |||
Sbjct 1117 AGCTG-CCC 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5