BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22485.1

Length=1971
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945881 jgi|Araly1|945881|scaffold_702110.1                        287    2e-76


> Ahg945881 jgi|Araly1|945881|scaffold_702110.1
Length=425

 Score =  287 bits (155),  Expect = 2e-76
 Identities = 333/412 (81%), Gaps = 40/412 (10%)
 Strand=Plus/Plus

Query  1    ATGGCCCCAAAGGGTTCAACAAAAACCTTAGCTCTCTTCCTTACACTGATCAGCATTCTT  60
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  22   ATGGCCCCAAAGGGTTCAACAAAAACCTTAGCTCTCTTCCTTGCACTGATCAGCATTCTT  81

Query  61   CTCCTCGGCCAAACCCAAGCCCAAAACCGTCCCTATCTCCGCCCACCTCCACCACGCATT  120
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  82   CTCCTCGGCCAAACCCAAGCCCAAAACCGTCCCTATCTCCGCCCACCTCCCCCACGCTTT  141

Query  121  CCTCCGCCACCATGTCCAGTATGTACTTGTCCAGAACCATCGCCACCGCCTCCACCAACT  180
            |||||||||||||||||||||||||||||||||| |||| | | |||   | |   || |
Sbjct  142  CCTCCGCCACCATGTCCAGTATGTACTTGTCCAGCACCA-C-C-ACC---TACGG-AAGT  194

Query  181  GTGACCCCACAGATTCCACCAACACTGCCTCCAACCATACCACCGGAGACTCCACCGACG  240
             | |||  || || ||||||  |||  |    | | |  |||||||| || || ||||| 
Sbjct  195  TTTACCA-AC-GAGTCCACC--CAC--C----A-C-A--CCACCGGAAACACCTCCGACC  240

Query  241  GGTCCACCAGCCACACCACCTACGGAAGTTTTACCAACAGGTC-CACCAACCCTA-C-CA  297
               |||||||  ||||| || |   || |   |||| | ||   ||||  ||| | | ||
Sbjct  241  ACACCACCAGAAACACCTCC-A---AA-TAC-ACCACC-GGAAACACC--CCCAAACACA  291

Query  298  CCACAG-ACA--CCTCCGACCATACCACCGGAAATACCTCCTAACACACCACCACAGACT  354
            |||| | | |  ||||| |||| |||||| |||  |||||| |||||||||||| | |||
Sbjct  292  CCACCGGAAAATCCTCCAACCACACCACCTGAAC-ACCTCCAAACACACCACCAGATACT  350

Query  355  CCACCAACGCTTCCAC-CAAACACGCCACCGGAGACACCTCCAA-CAACACC  404
            |||||||| ||||||| ||||||| ||||||||||||||||||| || ||||
Sbjct  351  CCACCAACACTTCCACACAAACACACCACCGGAGACACCTCCAAACA-CACC  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 74085526525


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5