BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22490.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492622 jgi|Araly1|492622|fgenesh2_kg.7__2055__AT4G22490.1 878 0.0
> Ahg492622 jgi|Araly1|492622|fgenesh2_kg.7__2055__AT4G22490.1
Length=634
Score = 878 bits (475), Expect = 0.0
Identities = 588/640 (92%), Gaps = 18/640 (3%)
Strand=Plus/Plus
Query 4 CACACTTTCATATCCACaaaataaaataaaaaaaTGGCCTCAAAGAGCTCAACCACCATT 63
||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1 CACACTTTCATATTCAC--AA-AAAA-AAAAAAATGGCCTCAAAGAGCTCAACCACCATT 56
Query 64 TCCCTCATCATCATCCTCCTCATCAGCCTCGCAGAAGCAAACCTCTTAAGCTCGCCTACA 123
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||
Sbjct 57 TCCCTCATCATCATCCTCCTCATCAGCCTTGCAGAAGCAGACCTCTTAAGCTCGCCTTCA 116
Query 124 CCGACCAACAACTTTGGCTCATGTCCCAGAAACCCATTGCAACTAGGCGTATGTGCCAAC 183
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 117 CCGACCAACAACTTTGGCTCGTGCCCCAGAAACCCATTGCAACTAGGCGTATGTGCCAAC 176
Query 184 GTCCTTGGCCTAGCCAATGTTACAGCTGGCGACCCCAGAGCACGACAGTGTTGCACTGCC 243
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 177 GTCCTTGGCCTAGCCAATGTTACAGCTGGAGACCCCAGAGCACGACAGTGTTGCACTGCC 236
Query 244 CTCAATGGCCTCACTAATGTTCAAGTAACCGATTGTCTCTGCTTTATCTTCAGGCCGA-T 302
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | |
Sbjct 237 ATCAATGGCCTCACTAACGTTCAAGTAGCCGATTGTCTCTGCTTTATCTTCAGGCC-ACT 295
Query 303 TCCGTTGGTTTTCGGTATTGATGTGGCCGTTAGAGAAATCTTTTTTGCTTGCAATAGGGT 362
||| |||||||| | || |||| || ||||||||||||||||||||||||||||||||
Sbjct 296 TCCTTTGGTTTTTGCAATCGATGAAGCTGTTAGAGAAATCTTTTTTGCTTGCAATAGGGT 355
Query 363 TTTTCCTATCGGTTTCCAGTGTCCACCACCA-CAGTAACTACTACTTAATTCCCCTAAAT 421
|||||| |||||||||||||||||||||||| ||||||| || |||||||||||||| |
Sbjct 356 TTTTCCAATCGGTTTCCAGTGTCCACCACCAACAGTAACCACCCCTTAATTCCCCTAATT 415
Query 422 AAGAGCCCTATCCGGTGTTTCCTTGCACTATAAGTTTGCTGGTACCAAAAGTATGGGTTT 481
|||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 416 AAGAGCCCTATCCGGTGTTTACTTGCACTATAAGTTTGCTGGCACCACAAGTATGGGTT- 474
Query 482 ATCTATTAATGTTTTACAGTGTTGGTGTGTGTTTCGTTGTTGATTAGAACGTAATTATAA 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 ATCTATTAATGTTTTACAGTGTTGGTGTGTGTTTCGTTGTTGATTAGGACGTAATTATAA 534
Query 542 GGACTATCGATGCTT-ACTAAAAAG---T-T--GTTA--A-GCATATCTATTAATGTCTA 591
||||| |||||| || | ||||||| | | ||| | |||||||||||||||||||
Sbjct 535 GGACTCTCGATGTTTTATTAAAAAGGACTGTATGTTGTTATGCATATCTATTAATGTCTA 594
Query 592 TGAAGAATAATATTAAATAAAGTATAACACTTTGTGTCTC 631
|||||||| ||| ||||||||||||||||| |||||||||
Sbjct 595 TGAAGAATCATAATAAATAAAGTATAACACCTTGTGTCTC 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5