BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22505.1

Length=1791
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945879 jgi|Araly1|945879|scaffold_702108.1                        392    4e-108


> Ahg945879 jgi|Araly1|945879|scaffold_702108.1
Length=539

 Score =  392 bits (212),  Expect = 4e-108
 Identities = 268/295 (91%), Gaps = 4/295 (1%)
 Strand=Plus/Plus

Query  1384  AGGACTCCACCACCGCCTCCCCCGAGTGGTAGATGCCCTAGGAATGGTATCCCACTACAA  1443
             ||||||||||||  |||||||||| |||| |||||||| |  |||||| |||||||||||
Sbjct  244   AGGACTCCACCAATGCCTCCCCCGCGTGGAAGATGCCCCATTAATGGTCTCCCACTACAA  303

Query  1444  ATATGTAGCACTATCCTAAATATGTTCGATGGTTTCCTAGGATTAGGAACGGCGCAACCA  1503
             ||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||| |||
Sbjct  304   ATATGTAGCACTATCCTAAGTATTTTCGATGGTTTCCTAGGATTTGGAAGGGCGCAGCCA  363

Query  1504  TGTTGTTCTCTCATTCGTGGTCTTTCTGATGCTGACGCACTTGCCTGCCTTTGTGAATCA  1563
             |||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||
Sbjct  364   TGTTGTTCTCTCATTCGAAATCTTTCTGATGCTGACGCACTTGCTTGCCTTTGTGAATCA  423

Query  1564  GTGAGAGCACCAAGTCGCAGTCTTCCTCGTAATATCATCAACCTCTTTAT--GACTTGTG  1621
             ||||||||||||||| ||||||| |||| ||||||||||||  |||||||  ||||||||
Sbjct  424   GTGAGAGCACCAAGTGGCAGTCTACCTCCTAATATCATCAA--TCTTTATAGGACTTGTG  481

Query  1622  GTCGTAGCATTCCCCCAGGCTTCACTTGCCCATGACCACCTCCTTTCCCCACAAT  1676
             |||||||||||||||||||||||||||||||||||||| | |||||||||| |||
Sbjct  482   GTCGTAGCATTCCCCCAGGCTTCACTTGCCCATGACCATCACCTTTCCCCAGAAT  536


 Score =  230 bits (124),  Expect = 4e-59
 Identities = 162/180 (90%), Gaps = 4/180 (2%)
 Strand=Plus/Plus

Query  43   ATATATATAACCTCGGACAAAATGAATCCAAAATGTTCAAAAACAACCCTAGCCCTCTTC  102
            |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    ATATATTTAACCTTGGA-AAAATGAATCCAAAATGTTCAAAAACAACCCTAGCCCTCTTC  60

Query  103  TTCGCATTCACCATCCTCCTCATTGGCCACGCTGAATCTAATAGCCGTCCCCGCCCTAGA  162
            || |||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||
Sbjct  61   TTTGCATTCACCATCCTCCTCATTGGCGACGCCGAAGCTAATAGCCGGCCCCGCCCTAGA  120

Query  163  ACACCACCTCC---ACCACGaaccccaagaactccatcacctcctccaccacgaacccca  219
             ||||||||||   |||||||||||||||||||||| || || |||| ||||| || |||
Sbjct  121  CCACCACCTCCTCCACCACGAACCCCAAGAACTCCACCAACTACTCCTCCACGTACGCCA  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67229282425


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5