BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22517.1
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945878 jgi|Araly1|945878|scaffold_702107.1 364 3e-100
> Ahg945878 jgi|Araly1|945878|scaffold_702107.1
Length=313
Score = 364 bits (197), Expect = 3e-100
Identities = 241/262 (92%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 169 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCTCCCTCACCACCAGCAACGT 228
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 50 GTCTGACTTGGGGATTTGCGTCAACGTACTTGGTCTCATCAACCTCACCACCAGCAACGT 109
Query 229 GGCCCGATGTTGTTCTATCTTAGCTGGTCTTAATAATACTCCTCTTGTGTCTGTATGTGC 288
||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 110 GGCCCAATGTTGTTCTATTTTATCTGGTCTTAATG---CTCCTCTTGTGTCTGTATGTGC 166
Query 289 ATGCGAGGCTGTAAGACTCAATATTCTTAACCTTCTCGGCATCACCGTCAACCTCAATTT 348
||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 167 ATGCGAGGCCCTAAGACTCAATATACTTAACCTTCTCGGCATCACCATCAACCTCAATTT 226
Query 349 GAGGCTTAATGGGCTCCTTGGTCTCTGTCGTTTGCCGGTACAACCTGGTTTCAACTGCCT 408
||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 227 GAGGCTTAATGGGCTTCTTGGTCTCTGCCGTTTGCCGATACAACCTGGTTACAACTGCCT 286
Query 409 TTTATAAGTAAACAATATGCAG 430
| |||||||||||| || |||
Sbjct 287 TGCATAAGTAAACAACATACAG 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20871107183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5