BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22520.1

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329373 jgi|Araly1|329373|fgenesh1_pm.C_scaffold_7001600           438    1e-122


> Ahg329373 jgi|Araly1|329373|fgenesh1_pm.C_scaffold_7001600
Length=342

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 310/345 (90%), Gaps = 6/345 (2%)
 Strand=Plus/Plus

Query  16   ATGATGAAAAACGCTATAGCTCTCTTCCTCACCATTAACCTCGTCTTCCTTGTCTTCACA  75
            |||||||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct  1    ATGATGAAAAACACTATAGCTCTCTTCCTCATCATCAACCTCGTCTTCCTTGGCTTCACA  60

Query  76   AAGGCCCAAGCTCCTCCACCTCAAGCTCCGGTGTGTCCCAGAGACTCGACCCAA-TTCCT  134
            |||||||||| ||||||||||||||||||||||||||| ||||||||||  ||| ||| |
Sbjct  61   AAGGCCCAAGTTCCTCCACCTCAAGCTCCGGTGTGTCCTAGAGACTCGA-TCAATTTCAT  119

Query  135  ATCTTGTA-CTAACGTGCTTAACCTCAGCTTAATCCTCATCAACAATCAATCAGTATTGC  193
            |||||||| | |||||  ||  |||||||||||||||||||||||| ||| |||| ||||
Sbjct  120  ATCTTGTAGC-AACGTATTTCGCCTCAGCTTAATCCTCATCAACAAACAAACAGTGTTGC  178

Query  194  CATGTTGCACTCTAGTGACTGGGCTTGACGCTGCTACGGCATCTGCCTGCATCTGCAATG  253
            |||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  179  CATGCTGCACTCTAGTGGCTGGGCTTGACGCGGCTGCGGCATCTGCCTGCATCTGCAATG  238

Query  254  CCGTTAGAATCACAATCTTTAATTTCTTGACTATCAATGTGAGAGTTAACCAAGTTCTTA  313
            ||||||||||||||||||| ||||||||||| |||||| || ||||| |||  |||||||
Sbjct  239  CCGTTAGAATCACAATCTTCAATTTCTTGACAATCAATCTGCGAGTTGACCGGGTTCTTA  298

Query  314  GACTCTGCCGTATAATTCCCCCA-CTTGGTTTCAGATGCCCTTAA  357
            |||||||||||||| |||||||| || |||||| ||||| |||||
Sbjct  299  GACTCTGCCGTATACTTCCCCCAGCT-GGTTTCCGATGCGCTTAA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12705811137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5