BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22530.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492618 jgi|Araly1|492618|fgenesh2_kg.7__2051__AT4G22530.1 845 0.0
> Ahg492618 jgi|Araly1|492618|fgenesh2_kg.7__2051__AT4G22530.1
Length=1046
Score = 845 bits (457), Expect = 0.0
Identities = 581/639 (91%), Gaps = 16/639 (3%)
Strand=Plus/Plus
Query 5 CCTCTATTATTAAAGCTCACCAGAATTCGAAAC-CAATTT-GATCAGAAATTTGAATCGA 62
|||| |||||||||| |||||| |||||||||| ||||| ||| | || ||| | |
Sbjct 1 CCTCAATTATTAAAGATCACCAAAATTCGAAACAAAATTTAAATC-G-AA---GAAGCAA 55
Query 63 AGAAGCAAAT-CACAAAAATGTCAGGAGTTTACGATAGTCAAGCTGATATCTACTTAGAC 121
| | ||||| | ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 56 ATCA-CAAATATAAAAAAATGTCAGGAGTTTACGACAATCAAGCTGATATCTACTTAGAC 114
Query 122 GCACGACCTACTTATCCCGCCGATTGGTACTCCAAGCTCGCCGCTCTCTCCCACCGTCAC 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GCACGTCCTACTTATCCCGCCGATTGGTACTCCAAGCTCGCCGCTCTCTCCCACCGTCAC 174
Query 182 AATCTCGCTTGGGACGCCGGAACCGGAAACGGCCAAGCTGCCATCGGAATCGCGGAACAC 241
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 175 AATCTCGCTTGGGATGCCGGAACCGGAAACGGCCAAGCCGCCATCGGCATCGCGGAACAC 234
Query 242 TACGAAAGAGTCGTTGCGACGGACGTTAGCGAGACGATGTTGAATCTCGGAAAACCGCAT 301
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 235 TACGAAAGAGTCGTCGCGACGGATGTGAGCGAGACGATGTTGAATCTCGGAAAACCGCAT 294
Query 302 CCGAAAGTAACGTACCACCACACGCC-CTCGTCGATGACGGAAGATGAAATGGTAGA-TC 359
||||| |||||||||||||||||||| | |||||||||||||||| || ||||| || ||
Sbjct 295 CCGAAGGTAACGTACCACCACACGCCGC-CGTCGATGACGGAAGACGAGATGGT-GAATC 352
Query 360 TTATTGGAGGAG-AGA-A-CTCTGTGGATTTGATAACGGTGGCTACCGCCGTACACTGGT 416
| || ||||||| ||| | |||||| ||| ||||||| || || || || ||||||||||
Sbjct 353 TGATCGGAGGAGGAGAGAACTCTGTCGATCTGATAACTGTAGCCACTGCTGTACACTGGT 412
Query 417 TCGATCTCCCGAGATTCTACGCGATCGCGAATCGTCTCCTCCGTAAACCAGGAGGAATCA 476
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 413 TCGATCTCCCGAGATTCTACGCGATTGCAAATCGTCTTCTCCGTAAACCAGGAGGAATCA 472
Query 477 TCGCCGTGTGGAGCTACAACACTGACATGGTGGTGAATCCCGAGTTCGACTCGGTGATGA 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 473 TCGCCGTGTGGAGCTACAACACTGACATGGTGGTGAGTCCCGAGTTCGACTCGGTGATGA 532
Query 537 CTCGGTTCATCGCTGAAACGTTGCCGTATTGTAAATTCCCAGAGAGTCAGTATTTTTTGG 596
||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTCGGTTTAGCGCTGAAACGATGCCGTATTGTAAATTCCCAGAGAGTCAGTATTTTTTGG 592
Query 597 ACGGATATAAGACGTTGCCGTTTCCGTTTGAGAGCGTGG 635
|||||||||| ||||| ||||||||||||||||| ||||
Sbjct 593 ACGGATATAAAACGTTACCGTTTCCGTTTGAGAGTGTGG 631
Score = 431 bits (233), Expect = 6e-120
Identities = 339/387 (88%), Gaps = 20/387 (5%)
Strand=Plus/Plus
Query 670 GATGAAGAAAACGGTGTCGTTTGAAGGATTCTTGCGGATGCTAAGATCGTGGTCTGCCGT 729
||||| | |||| ||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 631 GATGATG-AAACAGTGTCGTTTGAAGGATTCTTGCGGATGTTGAGATCATGGTCTGCCGT 689
Query 730 TGGTGCTGCTAAAGAAAAAGGAGTAGACTTATTGTCGGACAATGTAGTCAAAGAGCTCGA 789
|||||||||||| || |||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 690 TGGTGCTGCTAAGGAGAAAGGAGTAGACTTGTTGTCCGATAATGTAGTCAAAGAGCTTGA 749
Query 790 GACGGCTTGGGGTGGTTATGAGCTGGTTCGAACCATTGTTTACAAGACGTTTATGCTCGC 849
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 750 GACGGCTTGGGGTGGTTATGATCTGGTTCGAACCATTGTTTACAAGACGTTTATGCTCGC 809
Query 850 AGGAACCGTTCCTTAGAAACTAGCTTCTTTTTAATTTGGTATGG--CTAAGTCTGAAACT 907
||||||||||| ||||||||||||||||| |||| |||||| ||| || |||||||
Sbjct 810 AGGAACCGTTCGTTAGAAACTAGCTTCTTCTTAAATTGGTAACCAACTA-GT-TGAAACT 867
Query 908 TGATATCTTAAGGGTATTTGAAACCTCATGAAATAACAAAAACAGGATAAACATAAAAA- 966
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 868 TGATATCTTAATGGTATTTGAAACCTCATGAAATAACAAAAATA---TAAACATAAAAAA 924
Query 967 --GTTTA------TTTTACCTTTTCATCGAACATCAAAACGAA-CATGTGAAAACGTTT- 1016
| | | ||||||||| |||| ||||||||||||||| ||||||||||| |
Sbjct 925 ACGATAAAAAAAATTTTACCTTATCATAGAACATCAAAACGAAACATGTGAAAACACTAC 984
Query 1017 GTAATGTTTTCGCTTTATTTCAACAAA 1043
| ||||||||| |||||||||||||||
Sbjct 985 G-AATGTTTTCACTTTATTTCAACAAA 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5