BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22540.1
Length=2782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492615 jgi|Araly1|492615|fgenesh2_kg.7__2048__AT4G22540.1 3674 0.0
> Ahg492615 jgi|Araly1|492615|fgenesh2_kg.7__2048__AT4G22540.1
Length=2598
Score = 3674 bits (1989), Expect = 0.0
Identities = 2328/2485 (94%), Gaps = 49/2485 (2%)
Strand=Plus/Plus
Query 46 CTTACTCAGTCTCACATTTAAGCAACctctctctctctgat-tctctctttctctgagaa 104
||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1 CTTACGCAGTCTCACATTTAAGCAATCTCTCTCTCTCT-CTCTCTCTCTTTCTCTGAGAA 59
Query 105 aaatctcagtttctcagagctctcaggttcttttattcttcttcttcttcGATTTCATCC 164
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 60 AAATCTCAGTTCCTCAGAGCTCTCAGGTTCTTTTA---TTCTTCTTCTTCGATTTTATCT 116
Query 165 CCCAAATCTGCATGCTCTGGATCT--TACGAATGTTGCTTTGTAGTTTTATGATCTGAGA 222
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||
Sbjct 117 CCCAAATCTGCATGCTCTCGATCTAAGACGAATGTTGCTTCGTAGTTTTATGATCTGAGA 176
Query 223 TCAAATTTTAACAAATCCGTCACCGGAGACGAAAATGCGGGTTAAAGAGTTACATCCACT 282
| | | |||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 177 -GAGA---T--CAAATCCGTCACCGGAGAAAAAAATGCGGGTGAAGGAGTTGCATCCACT 230
Query 283 TTGTTGTATTACTTTGGAGAGTCCTCACGGGA-T--TAATAGCCAGTCACCGGAAGAACC 339
||||||||||||||| |||||||| ||||||| | ||||| ||||||||||||||||||
Sbjct 231 TTGTTGTATTACTTTAGAGAGTCCACACGGGATTAATAATAACCAGTCACCGGAAGAACC 290
Query 340 GGTGACAACGGCTTTAACTAGGTCAAGGAGTTTACCGGCG-A------AATC-GTTGA-C 390
|||||| ||||||||||||||||||||||||||||||||| | |||| || || |
Sbjct 291 GGTGACGACGGCTTTAACTAGGTCAAGGAGTTTACCGGCGAAGTCGTTAATCGGTGGAGC 350
Query 391 C--GGT-GGATCGGAATCGGAGACTGTAGCTGGGATCTTATATAAATGGACTAATTTTGG 447
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CAAAGTGGGATCGGAATCGGAGACTGTAGCTGGGATCTTATATAAATGGACTAATTTTGG 410
Query 448 TAAAGGATGGAGATCTAGATGGTTCTTACTCCGTAACGGAATCTTATCTTATTCTAAGAT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TAAAGGATGGAGATCTAGATGGTTCTTACTCCGTAACGGAATCTTATCTTATTCTAAGAT 470
Query 508 CCGGAGACCGGAGAATTTGAATCTACTTTCTCCGG-ATGATGATGTGAGGTTAATCGGAG 566
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 471 CCGTCGACCGGAGAATTTGAATCTACTTTCTCCGTCA-GATGATGTGAGGTTAATCGGAG 529
Query 567 ATATTTCCGGTGAACGTCTTTCGAGAATGGATAGTTGTAGTGGTCGCCGGAAACAACAAA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATATTTCCGGTGAACGTCTTTCGAGAATGGATAGTTGTAGTGGTCGCCGGAAACAACAAA 589
Query 627 AAACCGTCGGCATTGTTCATCTTAAGGTTTCTTCTTTCAGAGAAAGCAAGTCTGATGATA 686
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 590 AAACCGTCGGCATTGTTCATCTTAAGGTTTCGTCTTTCAGAGAAAGCAAGTCGGATGATA 649
Query 687 GAAAGTTCTATATATTCACAGCAACAAAGACCCTTCATTTGAGGACTGATTCTATAACTG 746
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 650 GAAAGTTCTATATATTCACAGCAACCAAGACCCTTCATTTGAGGACTGATTCTATAAGTG 709
Query 747 ATAGAGCAGCTTGGTTACAAGCATTAGCATCTACAAAATGTATCTTTCCTCTGCGGTCAC 806
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 710 ATAGAGCGGCTTGGTTACAAGCATTAGCATCTACAAAATGCATCTTTCCTCTCCGGTCGC 769
Query 807 TTAATGGGGATTTCTCCTTCATACCACCAAAGGATTTGTCCATATCAACTGAGAGACTAA 866
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 770 TTAATGGGGATTTCTCCTTTATACCACCAAAGGATTTGTCCATATCAACTGAGAGGCTAA 829
Query 867 AGAAACGGTTGCACGAAGAGGGTATGAATGAGAATCTCGTCAAAGAGTGCGAACAGATCA 926
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 830 AGAAACGGTTGCACGAAGAGGGAATGAATGAGAATCTTGTAAAAGAGTGCGAACAGATCA 889
Query 927 TGCTCTCAGAATTTTCTGAAATGCACGGACAAGTTAAACTTTTACACGAAGAACGGACTA 986
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 890 TGCTCTCAGAATTTTCTGAAATGCACGGACAAGTTAAGCTTTTACACGAAGAACGGACGA 949
Query 987 ATTTGCTTGATGCATTGAGGCAGCTTGAGGCAGCTAATCTCGAAGTTGGTGCATCAGGGA 1046
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 950 ATTTGCTTGACGCATTGAGGCAGCTAGAGGCAGCTAATCTCGAAGTTGGCGCATCAGGGA 1009
Query 1047 AGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGAATGCAGCACAACTGCTTCAT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGCATGAGTTTTCAAGCCTAGGACGTGGAAAGTATAGTGAATGCAGCACAACTGCTTCAT 1069
Query 1107 CTGATGGTAAACAAGAGTTTGAGGATGTGTCTGAGGAAGATGAACCTTCCTTCCACGACA 1166
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1070 CTGATGATAAACAAGAGTTTGAGGATGTGTCTGAGGAAGATGAACCTTCCTTCCATGACA 1129
Query 1167 CAAAGGAGTTCTTTAACGAACCTAACATTGGTTCTGAATCAAATTTAGCTATTTCTGGAC 1226
|||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1130 CAAAGGAGTTCTTTCATGAACCTAATGTTGGTTCTGAATCAAATCTAGCTATTTCTGGAC 1189
Query 1227 ACACGGATATCAAGAGAAGAACAAAACTTCCTGATCCAGCTGAAAAAGAGAAAGGTGTTA 1286
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1190 ACGCGGATATCAAGAGAAGAACGAAACTTCCTGATCCAGCTGAAAAAGAGAAAGGTGTCA 1249
Query 1287 GTCTTTGGTCTATGATCAAAGACAACGTTGGAAAGGATCTCACCCGAGTTTGCCTCCCTG 1346
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1250 GTCTTTGGTCTATGATCAAAGACAACGTTGGAAAGGATCTCACCAGAGTTTGCCTCCCTG 1309
Query 1347 TGTATTTCAATGAACCAATATCATCCCTCCAAAAATGTTTTGAAGACTTGGAGTATTCGT 1406
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 1310 TGTATTTCAATGAACCAATATCATCCCTCCAAAAGTGCTTTGAAGACTTGGAGTACTCGT 1369
Query 1407 ATCTTTTGGACCGAGCATATGAACATGGAAAATCTGGGAATGGTCTCTTAAGAGCCTTAA 1466
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 ATCTTCTGGACCGAGCATATGAACATGGAAAATCTGGGAATGGTCTCTTAAGAGCCTTAA 1429
Query 1467 ATGTTGCTGCTTTTGCGGTCTCTGGATATGCTTCCACTGAAGGCAGGCATTGTAAGCCCT 1526
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1430 ATGTTGCTGCTTTTGCCGTCTCTGGATACGCTTCCACTGAAGGCAGGCACTGTAAGCCCT 1489
Query 1527 TCAATCCTTTGCTTGGAGAAACCTATGAAGCCGACTTTCCTGAAAAGGGAATCCGTTTCT 1586
||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1490 TCAATCCTTTGCTTGGAGAAACCTATGAAGCCGACTTTCCTGAAAAGGGGAT---T--C- 1543
Query 1587 TCTCTGAGAAGGTCAGTCACCATCCAACTGTTATC-GCC-TGCCACTGTGAAGGTAAAGG 1644
| ||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 1544 -----G------TCAGTCACCATCCAACTGTTATCCGCCCTGCCACTGTGAAGGGAAAGG 1592
Query 1645 GTGGAAGTTTTGGGGTGACACTAACCTCAGGTCAAAGTTTTGGGGGAGGTCGATTCAAGT 1704
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GTGGAAGTTCTGGGGTGACACTAACCTCAGGTCAAAGTTTTGGGGGAGGTCGATTCAAGT 1652
Query 1705 CGAACCTGTTGGAGTTTTGACTCTGGAGTTCGATGATGGAGAAGTATTTCAGTGGAGCAA 1764
||||||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 1653 CGAACCTGTCGGAGTTTTGACTCTAGAGTTTGATGATGGCGAAGTGTTTCAATGGAGCAA 1712
Query 1765 GGTAACATCAACTATATACAATATCATACTAGGTAAACTCTACTGTGATCATCATGGTGT 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 GGTAACATCAACTATATACAATATCATACTAGGTAAACTCTACTGTGATCATCATGGTGT 1772
Query 1825 GATGCAAATCCGTGGGAACCGCCAATATTCTTGTACGCTCAAGTTTAAGGAGCAATCCAT 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 GATGCAAATCCGTGGGAACCGCCAATATTCTTGTACGCTCAAGTTTAAGGAGCAATCCAT 1832
Query 1885 TCTTGAGAGAAATCCCCACCAGGTAAACGGTTTTGTAGAAGACGTAGCAGGGCAAAAAGC 1944
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1833 TCTTGAGAGAAACCCCCACCAAGTAAACGGTTTTGTAGAAGACGTAGCTGGGCAAAAAGT 1892
Query 1945 AGCAACAATATTTGGTAAATGGGATGATAGCCTTTACTATGTTGCTGGTGATGGAATCAA 2004
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1893 GGCAACAATATTTGGTAAATGGGATGATAGTCTTTACTATGTTGCCGGTGATGGAATCAG 1952
Query 2005 CAAGTCGAAAGTCAGTGATCCTGCATCAAATGCCTCGTTACTGTGGAAAAGGACCAAGCC 2064
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||
Sbjct 1953 CAAGTCGAAAGTCAGTGATCCCGCATCAAATGCGTCGTTACTGTGGAAAAGGACCAGGCC 2012
Query 2065 ACCGCCTAATGTAACTAGATACAACTTAACCTCATTTGCCATTACTCTGAACGAGCTAAC 2124
|||||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 2013 ACCGCCTAATGTCACTAGATACAACTTAACCTCATTTGCCATTACCCTAAACGAGTTAAC 2072
Query 2125 ACCTGGGTTACAGGAGATACTTCCTCCCACAGACTCTAGGCTCAGACCAGATCAACGGCA 2184
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2073 ACCTGGTTTACAGGAGATACTTCCTCCTACAGATTCTAGGCTCAGACCAGATCAACGGCA 2132
Query 2185 TCTTGAGAATGGTGAATATGAGAAGGCGAACTTAGAGAAACAACGGTTAGAAAGAAGGCA 2244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2133 TCTTGAGAATGGTGAATATGAGAAGGCGAACTTAGAAAAACAACGGTTAGAAAGAAGGCA 2192
Query 2245 AAGAATGTCGCGGCAACTTCAAGAAAGCGGTTGGAGACCGAGATGGTTTGAGAGACAAGG 2304
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2193 AAGAATGTCGCGGCAACTTCAGGAAAGCGGATGGAGACCGAGATGGTTTGAGAGACAAGG 2252
Query 2305 TGAAAGCGACACCTTCAAGTACACGGGTGGTTATTGGGAAGCACGAGGGCATAGGAACTG 2364
||||||||| || |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 2253 TGAAAGCGAAACATTCAAGTACACGGGTGGTTACTGGGAAGCACGAGGGCACAGAAACTG 2312
Query 2365 GGATGATTGCCCCGACATCTTCGGGGAGTTCACAGAAGAGCTAGCGGACGCCGCTTAGAA 2424
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2313 GGATGATTGCCCCGACATATTCGGGGAGTTCACAGAAGAGCTAGCGGATTCCGCTTAGAA 2372
Query 2425 AGCTTCTTGACTTCATTCCAGAAGATCTTCATTCGGACCATATTGGAGTTGTTTACACGG 2484
|||||||||| ||||||||||||||||| ||| ||||||| | |||||||||||||||||
Sbjct 2373 AGCTTCTTGATTTCATTCCAGAAGATCTCCATCCGGACCACAATGGAGTTGTTTACACGG 2432
Query 2485 CAGCACCCATCTTTCGACCATGGTT 2509
||||| | ||||| ||||||||||
Sbjct 2433 AAGCACACGTCTTTGGACCATGGTT 2457
Score = 200 bits (108), Expect = 4e-50
Identities = 135/147 (92%), Gaps = 5/147 (3%)
Strand=Plus/Plus
Query 2590 TTGAGTCTTAGAGTGTCACTGTAAAGTCTTATATCCTTCTCTTCAATTCTCTATCTCCCT 2649
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2456 TTGTGTCTTAGAGAGTCACTGTAAAGTCTTATCTCCTTCTCTTCAATTCTCTATCTCCCT 2515
Query 2650 CGTCAAATAGTTGAGATTAATGTAGTAGGTTGGTCTTACA-TTGGACAAGTTCCTTGTAA 2708
||| |||||||||||||||| | |||||||||||||||| |||||| ||||| ||||||
Sbjct 2516 CGTTAAATAGTTGAGATTAA--T-GTAGGTTGGTCTTACATTTGGACGAGTTCATTGTAA 2572
Query 2709 TCCATTTGTATTTAATTATTaaaaaaa 2735
|||||||||||||||||| |||||||
Sbjct 2573 TCCATTTGTATTTAATTAA-AAAAAAA 2598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104976715220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5