BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22550.1
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492614 jgi|Araly1|492614|fgenesh2_kg.7__2047__AT4G22550.1 955 0.0
> Ahg492614 jgi|Araly1|492614|fgenesh2_kg.7__2047__AT4G22550.1
Length=755
Score = 955 bits (517), Expect = 0.0
Identities = 696/779 (89%), Gaps = 26/779 (3%)
Strand=Plus/Plus
Query 7 AGATCTGTTACGACAGTTATGTCTCCGTCGACGACGACGATTTTCATCGGTCCCATCTTA 66
||||||||||| ||||||||||||||||||||| || ||||| || | ||||||||||||
Sbjct 1 AGATCTGTTACAACAGTTATGTCTCCGTCGACGGCGGCGATTATCGTTGGTCCCATCTTA 60
Query 67 GCGGTGGACGCCGCCGTATCTCACGCGATTCACACGGCGGCGAAACCATTCCTCCCACCA 126
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 61 GCGGTGGACGCCGCCGTATCTCACGCAATTCACACGGCGGCGAAGCCATTCCTTCCACCA 120
Query 127 TTTGTCCTCCTCCTCCTCGAAATCTCAGCTGATttccgattctccttccccgtatccctt 186
||| ||||||||||||| |||||||| || |||||||||||||||||||| |||||||||
Sbjct 121 TTTCTCCTCCTCCTCCTAGAAATCTCCGCCGATTTCCGATTCTCCTTCCCTGTATCCCTT 180
Query 187 tccttcctcctctcccctccattacgctctttcctcgtccctttcctcctcggcctcctc 246
||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TCCCTCCTCCTCTCCCCTCCCTTACGCTCTTTCCTCATCCCTTTCCTCCTCGGCCTCCTC 240
Query 247 ttcGATCTAATCTTCGTCGGAATCGTAAAATTAATCTTCCGTCGTGCTCGTCCCGCTTAC 306
||||||||||||| ||| | | || |||||||||||||||||||||||||||||||||
Sbjct 241 CTCGATCTAATCTTAATCGCATTAGTGAAATTAATCTTCCGTCGTGCTCGTCCCGCTTAC 300
Query 307 AATCACCCTTCAATGTCCGCCGCTGTATCAGCTGATCACTACTCGTTCCCCTCAGGTCAC 366
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AATCACCCTTCAATGTCCGCCGCTGTATCAGCTGATCACTACTCGTTTCCCTCAGGTCAC 360
Query 367 GCTTCTCGCGTTTTCTTCGTTGCTGCATCTGTTCACTTCTTCTCTGCTGCTGCTGAAGCT 426
|| |||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 361 GCGTCTCGCGTCTTCTTCGTTGCCGCTTCCGTTCACTTCTTCTCTGCTGCTGCTGAAGCT 420
Query 427 TCCATGACTGG-TCCAAGCTACTCCTTCTTAGATGGATGGATCAGAGATCATAACGATGG 485
| ||| | | ||| || ||||| ||||||||||| |||||||||||| || |||||||
Sbjct 421 ACAATGG-TAGATCCGAGTTACTCTTTCTTAGATGGTTGGATCAGAGATAATCACGATGG 479
Query 486 CGATGTGAAGGTAGAAGTTGTGGTCGTTGTATGGATCTGGGCAACAGTGACTGCAATTTC 545
|||||| || |||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct 480 CGATGTCAAACCAGAAGTTGTGGTGGCTGTATGGATCTGGGCAACAGTGACTGCATTTTC 539
Query 546 AAGGATTCTTTTAGGAAGACATTACGTTCTCGATGTAGCTGCTGGTGCTTT-TTTAGGGA 604
||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 540 AAGGATTCTCTTAGGAAGACATTATGTTCTCGATGTAGCTGCTGGTGCTTGCTTT-GGGA 598
Query 605 TTGTAGAAGCTCTCTTTGCTCTTCGATTTCTGAGATTTGATGAAATGATCTTTGGGAGGT 664
||||||||||||||||||| |||||||||||||||||||| | | |||||||||||
Sbjct 599 TTGTAGAAGCTCTCTTTGCGCTTCGATTTCTGAGATTTGA--AC-T---CTTTGGGAGGT 652
Query 665 AACAAATGTATCCAAATTGTTGTTGTTTTTAACAAATTGTTCTGTAATTTTTGTTTCGAT 724
|||||| ||||||||| |||||||||| | |||||||| ||||||||
Sbjct 653 AACAAAAGTATCCAAAATGTTGTTGTT-----------G--CTGTAATT---GTTTCGAT 696
Query 725 TACATTGAGAAGAAGAATTGTATTGTTCATGAATCAAAGATTGTTCCTTTTGTTTCACT 783
||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 697 TACATTGAGAAGAAGAATTTTATTGTTCATGAGTCAAAGATTGTTCCTTTTGTTTGACT 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28935294003
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5