BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22560.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492613 jgi|Araly1|492613|fgenesh2_kg.7__2046__AT4G22560.1 1044 0.0
Ahg475095 jgi|Araly1|475095|fgenesh2_kg.2__225__AT1G62520.1 71.3 1e-11
> Ahg492613 jgi|Araly1|492613|fgenesh2_kg.7__2046__AT4G22560.1
Length=714
Score = 1044 bits (565), Expect = 0.0
Identities = 667/716 (93%), Gaps = 8/716 (1%)
Strand=Plus/Plus
Query 141 ATGTCGTCGTCGAGTTACAATTGTAGTCGAAAGAGCTCACATTGCGTCAAAGACGTGATC 200
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTCGTCAAGTTACAACTGTAGTCGAAAGAGCTCACATTGCGTCAAAGACGTGATC 60
Query 201 GATACCCGGTTAAGCAAGAAAAACCAGAAACCCGACCCGAATCTAAGGCGTTTCAAGTCT 260
|||||||| || | |||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 61 GATACCCGATTCGGTAAGAAAAACCCGAAACCCGACCCGAATTTAAGGCGTTTGAAGTCT 120
Query 261 TGTCGAACCGAAACAGAG-TTACTTAACCCGCCAAA-CCGGACCCGACGAAGCAAATCTG 318
|||||||||||||||||| || ||||||||| |||| ||| |||||||||||||||||||
Sbjct 121 TGTCGAACCGAAACAGAGCTT-CTTAACCCG-CAAACCCGAACCCGACGAAGCAAATCTG 178
Query 319 CCCGAACATCAGACGCACTGACCGAGCTGCCCGATGGTCACCCGTCAAGAAACGTAGTGG 378
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 CTCGAACGTCAGATGCACTGACCGAGCTGCCCGATGGTCACCCGTCAAGAAACGTGGTGG 238
Query 379 AGATTATATTTCATTCAAGCTGGAGCTCCGACGAGTTTCCGGGTCGGATCGAGATGATTT 438
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGATTATATTCCAGTCTAGCTGGAGCTCCGACGAGTTTCCGGGTCGGATCGAGATGATTT 298
Query 439 TCAAAGTGGAACACGGGTCAAGGACTGTAACCCGGTTCGAGGAGTATAGAGAGGTTGTGA 498
||||||| ||| ||||||| |||||||| |||||||| |||||||| |||||| ||||||
Sbjct 299 TCAAAGTTGAAAACGGGTCGAGGACTGTGACCCGGTTTGAGGAGTACAGAGAGATTGTGA 358
Query 499 AGTCACGTGCGGGTTTTAACGGA-GGCACGTGTGAAGAAGAGGATGCACGGTGTTTGGCT 557
|||||||||||||||| ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 359 AGTCACGTGCGGGTTTAAAC-GAGGGCACGTGTGAAGAAGAGGACGCACGGTGTTTGGCC 417
Query 558 GATGGTAATGAGATGATGAGGTTTTATCCGGTTCTTGATGGGTTTAACGGTGGCGCGTGT 617
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACGGTAACGAGATGATGAGGTTTTATCCGGTTCTTGATGGGTTTAACGGTGGCGCGTGT 477
Query 618 GTTTTTGCCGGTGGGAAAGGTCAGGCTGTGTGTACGTTTTCGGGTAGTGGTGAAGCGTAC 677
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 GTTTTTGCCGGCGGGAAAGGTCAGGCGGTGTGTACGTTTTCGGGTAGTGGTGAAGCGTAC 537
Query 678 GTGAGTAGTGGAGGTGGCGGAGGAAGGAAGGCGATGATGATTTGTAGAGTGATAGCGGGT 737
|||||| | ||| |||||||||| ||||||||||||||||||||| | |||||||| |||
Sbjct 538 GTGAGTGGCGGAAGTGGCGGAGGGAGGAAGGCGATGATGATTTGTCGGGTGATAGCAGGT 597
Query 738 CGGGTTGATGAT-GTAATCGGGTTCGGGTCGGACTCGGTAGCTGGTCGTGACGGCGAGTT 796
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CGGGTTGATGATAG-AATCGGGTTCGGGTCGGACTCGGTAGCTGGTCGTGACGGCGAGTT 656
Query 797 GTTTGTCTTTGATACACGTGCGGTGTTGCCTTGTTTCTTAATCATTTTTAGATTGT 852
|||| |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 657 GTTTATCTTTGATACACGTGCGGTGTTGCCTTGTTTCCTAATCATTTTCAGATTGT 712
> Ahg475095 jgi|Araly1|475095|fgenesh2_kg.2__225__AT1G62520.1
Length=1082
Score = 71.3 bits (38), Expect = 1e-11
Identities = 44/47 (94%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 786 GACGGCGAGTTGTTTGTCTTTGATACACGTGCGGTGTTGCCTTGTTT 832
|||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 861 GACGGCGAGTTGCTCGTGTTTGATACACGTGCGGTGTTGCCTTGTTT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5