BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22570.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492612 jgi|Araly1|492612|fgenesh2_kg.7__2045__AT4G22570.1 1146 0.0
> Ahg492612 jgi|Araly1|492612|fgenesh2_kg.7__2045__AT4G22570.1
Length=848
Score = 1146 bits (620), Expect = 0.0
Identities = 700/738 (95%), Gaps = 8/738 (1%)
Strand=Plus/Plus
Query 158 TCTCTTCGTCGACAATGTCGGGAAACAAAGAAGAAGAGGATCCTCGTATCCATGGAATCA 217
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCTCTTCGTTGACAATGTCGGGAAACAAAGAAGAAGAGGATCCTCGTATCCATGGAATCA 174
Query 218 AAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGAAAGGAATAATGTTTCAAGACATAA 277
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 AAACTAAGATCCGTGTCGTTCCAGATTTTCCCAAGAAAGGAATAATGTTTCAGGACATAA 234
Query 278 CAACAGTGTTGTTGGATCCGAAAGCCTTCAAAGACACAATTGATCTGTTTGTGGAGAGGT 337
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 235 CAACAGTGTTGTTGGATCCGAAAGCCTTCAAAGACACAATTGATCTATTTGTGGAGAGGT 294
Query 338 ACAGAGACAAGAACATCTCAGTGGTTGCAGGAATAGAGGCTCGTGGTTTCCTATTCGGTC 397
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 295 ACAGAGACAAGAACATCTCAGTGGTTGCAGGAATAGAGGCTCCCGGTTTCCTATTCGGTC 354
Query 398 CACCGATCGCGCTAGCCATTGGAGCAAAATTTGTTCCTCTGCGCAAACCCAAGAAACTAC 457
|||| |||||||||||||||||||||||||| || ||||| || |||||||||||||| |
Sbjct 355 CACCAATCGCGCTAGCCATTGGAGCAAAATTCGTCCCTCTTCGGAAACCCAAGAAACTGC 414
Query 458 CTGGTGAAACAATATTTGAGGAATACGAGTTGGAATATGGAAATGACCGCCTAGAGATGC 517
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 415 CTGGTGAAACAATATTTGAGGAATACGAGTTAGAGTACGGAAATGACCGTCTAGAGATGC 474
Query 518 ACATAGGAGCCGTCGAGGCTGGCGATCGAGCTTTGGTCGTTGATGATCTTATCGCGACTG 577
|||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 475 ACATAGGAGCTGTCGAGGCTGGAGATCGAGCTTTGGTCGTTGATGATCTAATTGCGACCG 534
Query 578 GTGGTACTCTCTGCGCTGCCATTAACTTGCTCGAGAGGGTTGGAGCAGAAGTTGTGGAAT 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GTGGTACTCTCTGCGCTGCCATTAACTTGCTCGAGAGGGTTGGAGCAGAAGTTGTGGAAT 594
Query 638 GTGCATGTGTGATCGAGTTACCCGAATTAAAGGGAAGGCAGAGACTTAAGGGGAAGCCAC 697
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 595 GTGCATGTGTGATCGAGTTACCCGAATTACAGGGAAGGCAGAGACTTAAGGGGAAGCCAC 654
Query 698 TATGTATGCTTGTGGAGTACCGATGATGATTTTAGCTTTACTTATTTGGATAAAATTATT 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 655 TATGTATGCTTGTGGAGTACCGATGATGATTTTAGCTTTACTTATTTGGATAAA-TTATT 713
Query 758 CGGTTAATTAATTT-AT---GCTCCGAAAATTCGGATTATGCAGACTTCTTATTATTGGA 813
|||||||||||||| || || ||||| ||||||||||||||||||| ||||| |||
Sbjct 714 CGGTTAATTAATTTGATTATGCACCGAATATTCGGATTATGCAGACTTGTTATT---GGA 770
Query 814 TTCTACAATATTTTGATTTAAATTCTAGCGGATTAGCTGGAACAAATAATCCAAAGTTCT 873
||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 771 TTCTAAAATACTTTGATTTAAGTTCTGGCGGATTAGCTGGAACAAATAATCCAAAGTTCT 830
Query 874 TTGCTGTTTAAAAGCAGT 891
|||||||| ||||| |||
Sbjct 831 TTGCTGTTAAAAAGTAGT 848
Score = 135 bits (73), Expect = 4e-31
Identities = 109/125 (87%), Gaps = 7/125 (6%)
Strand=Plus/Plus
Query 1 AATAGTGGTAAGAGTAGTATGACTGCTTCACTTTCTCTTTCTCTTTTGTTCAAGTAGTTT 60
|||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||
Sbjct 1 AATAGTGGTAAGAGTACTATGACTGCTTCACTTTCTCTTTCTCTTT-GAACAAG-AGA-- 56
Query 61 GGgagagagaagagaagaagaagaCACCCTTTAAGCAAAACAGAGGATTTTCATTCTCTG 120
| ||||||||| |||||| ||||| |||||| ||| |||||||||||||| |||||||||
Sbjct 57 GAGAGAGAGAA-AGAAGA-GAAGATACCCTTAAAGAAAAACAGAGGATTTACATTCTCTG 114
Query 121 T-TCT 124
| |||
Sbjct 115 TCTCT 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5