BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22580.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492611 jgi|Araly1|492611|fgenesh2_kg.7__2044__AT4G22580.1 2182 0.0
> Ahg492611 jgi|Araly1|492611|fgenesh2_kg.7__2044__AT4G22580.1
Length=1525
Score = 2182 bits (1181), Expect = 0.0
Identities = 1381/1474 (94%), Gaps = 28/1474 (2%)
Strand=Plus/Plus
Query 2 AAACTACCACTCTCACTCCGACAACATCCATAACAATGGCTTCCAAATCCACCGTCACAA 61
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 AAACTACCACTCTCACTCCGACAACCTCCATAACAATGGCTTTCAAATCCACCGTCACAA 60
Query 62 CATTGACCAtcttcttcttcttcttcttcttcttcATCGAGCCTAAGGTTCAGTCTCAGC 121
||||||||| ||||||||||||||||| ||||||||| |||| || ||||
Sbjct 61 CATTGACCA---------TCTTCTTCTTCTTCTTCGTCGAGCCTAGGGTTGTTTCACAGC 111
Query 122 AAATCTCAGCCGTTGATTCAGAATGCACCAACCGTTGGATTCACATCCGAACACTCCCAT 181
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 112 AAATCTCAGCCGTCGATTCAGAATGCACCAACCGTTGGATCCACATCCGTACACTCCCAT 171
Query 182 CACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTT 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTT 231
Query 242 GCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACCCGAAGCTGGT 301
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 232 GCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACTCGAAGCTGGT 291
Query 302 ATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCAT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCAT 351
Query 362 GTCTCACACCCGACCCGAATCTCGCCTCCGCAATCTACCTCCCTTACTACGCCGGCATCG 421
||||||||||||||||| |||| |||||||| | || ||||||||||||||||| ||||
Sbjct 352 GTCTCACACCCGACCCGGATCTAGCCTCCGCCGTTTATCTCCCTTACTACGCCGGTATCG 411
Query 422 ATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATC 471
Query 482 TTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATC 531
Query 542 ATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTC 591
Query 602 CGATTTGGGGAACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTC 661
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CGATTTGGGGCACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTC 651
Query 662 TCGAATCTCGTTACTGGCCGTGGCAAGAACAAGCCGTTCCTTATCCGACGTCGTTTCATC 721
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 652 TCGAATCTCGTTTCTGGCCGTGGCAAGAACAAGCCGTCCCTTATCCGACGTCGTTTCACC 711
Query 722 CACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTT 771
Query 782 CTCTTATGCTATTCGCCGGCGGTGGTGGTACCTCCTCTTCTCCTAACATCCGTCGTAGTA 841
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 772 CTCTTATGCTATTCGCCGGCGGCGGAGGTACCTCCTCTTCTCCGAACATCCGTCGTAGTA 831
Query 842 TCCGCTTAGAGTGCACTAGCATAAACGCAACAC-AATCGGA-T--AA-T---A-AAA-TC 891
|||| |||||||| || | | ||||||| || | ||||||| | || | | ||| ||
Sbjct 832 TCCGATTAGAGTGTACAAACGTAAACGCCAC-CGAATCGGAATTGAAATCGGATAAAATC 890
Query 892 TGCGATTTCGTCGATTGTTCTAACGGAATCTGTGAGCATGATCCGATTAGATTCATGAGA 951
|||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 891 TGCGATTTTGTTGATTGCTCTAATGGAATCTGTGAGCATGATCCGCTTAGATTCATGAGA 950
Query 952 CCGATGTTACAATCATCGTTTTGTTTACAACCACCGGGAGATACACCAACAAGGAAAGCT 1011
|| |||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct 951 CCAATGTTACAATCATCGTTTTGCTTACAACCACCAGGAGATACACCAACACGTAAAGCT 1010
Query 1012 ACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAGGATCAAACGGCGAAA 1071
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1011 ACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAAGACCAAACGGCGAAA 1070
Query 1072 ATGCAGTACAAATGGCATTTACCGGAGTCCGAATTCGCGGAGTTTTCGGTTACGATTCCG 1131
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1071 ATGCAGTACAAATGGCATTTACCGGAATCCGAATTCGCGCAGTTTTCGGTTACGATTCCG 1130
Query 1132 AAGGAAGATGTAGTGTTTAGAGGAGTTAGAATACAAGATGTGTTGATGAGTATACCTAAA 1191
|| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1131 AAAGAAGATGTTGTATTTAGAGGAGTTAGAATCCAAGATGTGTTGATGAGTATACCTAAA 1190
Query 1192 GAAGAAGTTACTAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGA 1251
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GAAGAAGTTACGAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGA 1250
Query 1252 AGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCTATTGAT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1251 AGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCCATTGAT 1310
Query 1312 GGAGTTTTGGACAGGATTATATCTAGAGTTTGATTCTTACTAACAACAGTTTTAAACAGG 1371
||||||||||||| ||||| |||||||||||||| ||| ||||| || || ||||||||
Sbjct 1311 GGAGTTTTGGACAAGATTAAATCTAGAGTTTGATGATTAGTAACATCACTTATAAACAGG 1370
Query 1372 TATGTATTATGTTGTTGTTTGTTTAAATTGTT-ATACTTCAAAATTCATTTTTGATTGTT 1430
||||||| ||||||||||||||||| || || |||||| ||||||| ||||||||||||
Sbjct 1371 TATGTATAATGTTGTTGTTTGTTTAG-TTATTTATACTTAAAAATTC-TTTTTGATTGTT 1428
Query 1431 CATGTT---TGCCAAATCTCATTGAGATTTTTTG 1461
|||| ||| |||||||||||||||||||||
Sbjct 1429 --TGTTGGATGCAAAATCTCATTGAGATTTTTTG 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5