BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22592.1
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492609 jgi|Araly1|492609|fgenesh2_kg.7__2042__AT4G22592.1 2338 0.0
Ahg490048 jgi|Araly1|490048|fgenesh2_kg.6__3182__AT4G12432.1 963 0.0
> Ahg492609 jgi|Araly1|492609|fgenesh2_kg.7__2042__AT4G22592.1
Length=1670
Score = 2338 bits (1266), Expect = 0.0
Identities = 1567/1703 (92%), Gaps = 57/1703 (3%)
Strand=Plus/Plus
Query 1 CTCCTCTTTCC-AAATTCCGGATTTTTAGTGAGCTCTTTGCAATTTTTAGGGTTTTCTTC 59
|||||| |||| |||||||| ||||||||||||||| | ||||||||||||| | ||
Sbjct 1 CTCCTC-TTCCTAAATTCCGTATTTTTAGTGAGCTC-TCGCAATTTTTAGGG---T-TT- 53
Query 60 GAATAAAGaaaaaaaaaaTCCCTGATCTTCCTCTTAGTGATTTCTCCTTTCGAGATCCCT 119
| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct 54 ---T----AAAAAAAAAATCCCTAATCTCCCTCTTAGTGGTTTCTCCTTTCGAGATCCCT 106
Query 120 GAGATTCCGAGAAAATCTGCAtttttttCTCGTGATTCTCTAGCTCTGTTTTGTGTTTTA 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 107 GAGATTCCGAGAAAATCTGCATTTTTTTCTCGAGATTCTCTAGCTCTGTTTTGTGTTTTA 166
Query 180 CACAGCTCTTTTGA-ATCAGGTTTGT-GTGTGATAGCGTTGT-TGTGGTAAAAGCTTTGT 236
|| ||| ||||||| | ||||||||| || ||| || || | ||||||||||||||||
Sbjct 167 CAGAGCACTTTTGACA-CAGGTTTGTGGT-TGA-AGTTTTTTGTGTGGTAAAAGCTTTGA 223
Query 237 ACATTTGAAGATTTAGAGATGATAAGTTTTCAGGTAACCTACTTTTAATGGACAGTTCAA 296
||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 224 ACAATCGAAGATTTAGAGATGATAAGTTTTCAGGAAACCTACTTTTAATGGACAGTTCAA 283
Query 297 CAACAAGCAGTGATAAGAAAACACTAAAGAGGTGGTTTTTCATTGACAAAAGAGTTGGAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CAACAAGCAGTGATAAGAAAACACTAAAGAGGTGGTTTTTCATTGACAAAAGAGTTGGAT 343
Query 357 --------AAAGTGTGTTTAGAAGAAGCCGTCGAATTTCTTAGTTTGAAGCATTTTATTG 408
||||| ||||||||||||||| ||||||||||| |||||||||| ||| |||
Sbjct 344 AAAAAAACAAAGTTTGTTTAGAAGAAGCCATCGAATTTCTT-GTTTGAAGCA-TTT-TTG 400
Query 409 TTTGGAGAGTTCGATGGATTTGAATATAAACAAGACGACCCCTGTTCTTAGTGACCCTAC 468
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 401 TTTGGAGAGTTCGATGGATTTGAATATAAATAAGACGTCCCCTGTTCTTAGTGACCCTAC 460
Query 469 TACACCAGT-AAGTAAAACAAGACTTGGATCATCCTTCCCTTCAGGGAGATTCATGATGA 527
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TACACCAGTCAA-CAAATCAAGACTTGGATCATCCTTCCCTTCAGGGAGATTCATGATGA 519
Query 528 ATTCTAGAAAGAAGATTCCTAAACTCGATGATGTTCGATCTAACGGTTGGTTGGACGCGA 587
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 520 ATTCTAGGAAGAAGATTCCTAAACTCGATGATGTTAGATCTAACGGTTGGTTGGATGCGA 579
Query 588 TGATATCTTCGTCTCCACCGCGTAAAAGGCTTGTCAAGGATTTCAATATTGAGATTGCTC 647
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 580 TGATATCCTCGTCCCCACCGCGTAAAAGGCTTGTCAAGGATTTCAACATTGAGATTGCTC 639
Query 648 CTGAAGATGATTTTTCTCAACGGGCCTGGATGCTCAAGTATCCTTCAGCGATTACCTCGT 707
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CTGAAGATGACTTTGCTCAACGGGCCTGGATGCTCAAGTATCCTTCAGCGATTACCTCGT 699
Query 708 TTGCGCATATTGCAGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TTGCGCATATTGCAGCTCAAGCAAAGAACAAGAAGATAGCTGTGTTTCTAGATTATGATG 759
Query 768 GAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATGTCTGATGCGATGCGTG 827
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GAACGCTTTCCCCAATCGTTGATGACCCTGATCGCGCCATCATGTCTGATGCGATGCGTG 819
Query 828 CTGCTGTGAAAGATGTCGCCAAGTACTTCCCAACAGCAATAATTAGTGGTAGAAGCCGTG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CTGCTGTGAAAGATGTCGCCAAGTACTTCCCAACAGCAATAATTAGTGGTAGAAGCCGTG 879
Query 888 ACAAGGTTTACCAATTGGTAGGGCTAACCGAACTCTATTACGCGGGTAGTCACGGGATGG 947
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 880 ACAAGGTATACCAATTGGTAGGACTAACCGAACTCTACTACGCGGGTAGTCACGGGATGG 939
Query 948 ACATTATGACTCCTGTAAATCCAAATGGATCCCCTGAAGACCCTAATTGTATAAAAACCA 1007
|||| ||||| |||||||||||| |||| || ||||||||||| |||||||||||| | |
Sbjct 940 ACATAATGACCCCTGTAAATCCACATGGGTCTCCTGAAGACCCCAATTGTATAAAATCTA 999
Query 1008 CTGACCAACAGGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CTGACCAACAGGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAAAGAGTTCATACCCGTCA 1059
Query 1068 TTGAAGAGGTTTATAATAACCTCGTTGAGATAACTAAATGTATCAAAGGTGCAAAAGTAG 1127
| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1060 TCGAAGAGGTTTATAGTAGCCTCGTTGAGATAACTAAATGTATCAAAGGTGCAAAAGTGG 1119
Query 1128 AGAACCATAAGTTTTGTACTTCTGTACATTACCGTAATGTTGACGAGAAGGACTGGCCAC 1187
||||||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1120 AGAACCACAAGTTCTGCACCTCTGTACATTACCGTAATGTTGATGAGAAGGACTGGCCAC 1179
Query 1188 TTGTTGCTCAACGCGTTCATGACCACCTGAA-ACGATACCCTCGTTTGCGTATAACTCAC 1246
| ||||||||||| |||||||||||| |||| | |||||||||| ||||| | ||||||
Sbjct 1180 TCGTTGCTCAACGTGTTCATGACCACTTGAAGAA-ATACCCTCGTCTGCGTCTTACTCAC 1238
Query 1247 GGTAGAAAGGTTTTAGAGGTGCGTCCTGTGATTGAGTGGAACAAAGGAAAAGCAGTAGAG 1306
|| ||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||
Sbjct 1239 GGAAGAAAGGTTTTAGAGGTTCGCCCTGTGATCGAGTGGAACAAAGGAAAAGCAGTCGAG 1298
Query 1307 TTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAGTTCCTCCCAATCTTCATCGGA 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1299 TTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAGTTCCTCCCAATCTTCATTGGA 1358
Query 1367 GATGACAAGACCGATGAAGATGCATTCAAGGTACTGAGGGAAGGGAACAGAGGATTTGGA 1426
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GATGACAAGACCGATGAAGACGCATTCAAGGTACTGAGGGAAGGGAACAGAGGATTTGGA 1418
Query 1427 ATATTGGTATCGTCTGTACCAAAAGAAAGCAATGCATTTTACTCTCTTAGAGACCCTTCC 1486
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1419 ATATTGGTATCGTCTGTACCAAAAGAAAGCAATGCATTCTACTCTCTTAGAGACCCTTCC 1478
Query 1487 GAGGTGAAGAAGTTTCTCAAGACTTTGGTGAAATGGGGGAAGATGGAAAGTTCAAAAACA 1546
|||||||||||||||||||||||||||||||||||||||||| |||||| || | ||
Sbjct 1479 GAGGTGAAGAAGTTTCTCAAGACTTTGGTGAAATGGGGGAAGGTGGAAAACTCTA---CA 1535
Query 1547 AGTTTTTGATGATTGTGTAGGAGAATCAGAAGCTTC---ATTCTGCACTGCtttttaatt 1603
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 1536 AGTTTTTGATGATTGTGTAGGAGAAT-AGAAGCTTCTTCATTCTACACTGCTTTTTAATT 1594
Query 1604 tctt--a---tttt--ttttccttttttAAAGTTTGTACTTCTATATATTATCATTTTTC 1656
| || | |||| |||| |||||||| || | ||| || | ||||||||||||
Sbjct 1595 TTTTCTACCCTTTTAGTTTTTTTTTTTTAA--TT-GC-CTT-TA-AG-TTATCATTTTTC 1647
Query 1657 CATATTATCCATTAAGCAAACGG 1679
|||||||||||||| ||||||||
Sbjct 1648 CATATTATCCATTATGCAAACGG 1670
> Ahg490048 jgi|Araly1|490048|fgenesh2_kg.6__3182__AT4G12432.1
Length=1692
Score = 963 bits (521), Expect = 0.0
Identities = 870/1034 (84%), Gaps = 41/1034 (4%)
Strand=Plus/Plus
Query 515 AGATTCATGATGAATTCTA-GAAAGAAGA-TTCCTAAACTCGATGATGTTCGATCTAACG 572
|||||||||||| | || | | ||||| | | | ||||||||||||||| ||||||| |
Sbjct 502 AGATTCATGATG-ACTCAATGGAAGAA-ACCTGCGAAACTCGATGATGTTAGATCTAATG 559
Query 573 GTTGGTTGGACGCGATGATATCTTCGTCTCCACCGCGTAAAAGGCTT-GTCAAGGATTTC 631
||||||| || || ||||| || || |||||||||||||||| | || || || ||||||
Sbjct 560 GTTGGTTAGATGCAATGATTTCATCTTCTCCACCGCGTAAAAAG-TTCGTTAAAGATTTC 618
Query 632 AATATTGAGATTGCTCCTGAAGATGATTTTTCTCAACGGGCCTGGATGCTCAAGTATCCT 691
||| | ||| |||||||||||||||||||| ||||||| || |||||| | |||||||||
Sbjct 619 AATGTCGAGGTTGCTCCTGAAGATGATTTTGCTCAACGTGCTTGGATGGTGAAGTATCCT 678
Query 692 TCAGCGATTACCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAACAAGAAGATAGCTGTG 751
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 679 TCAGCGATTACCTCGTTTGCGCATATTGCAGCTCAAGCAAAGAAGAAGAAGATTGCTGTA 738
Query 752 TTTCTAGATTATGATGGAACACTTTCTCCAATAGTCGATGACCCTGATCGCGCCATCATG 811
||| |||||||||||||||| |||||||| ||||| ||||| |||||||| ||||| |||
Sbjct 739 TTTTTAGATTATGATGGAACTCTTTCTCCTATAGTTGATGATCCTGATCGTGCCATTATG 798
Query 812 TCTGATGCGATGCGTGCTGCTGTGAAAGATGTCGCCAAG-TACTTCCCAACAGCAATAAT 870
|||||||| |||||| | || || |||||||||| | || || |||||||| ||||||||
Sbjct 799 TCTGATGCAATGCGTTCCGCGGTTAAAGATGTCG-CGAGTTATTTCCCAACCGCAATAAT 857
Query 871 TAGTGGTAGAAGCCGTGACAAGGTTTACCAATTGGTAGGGCTAACCGAACTCTATTACGC 930
||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 858 TAGCGGTAGAAGCCGTGACAAGGTTTATCAGTTGGTAGGACTAACAGAACTCTATTACGC 917
Query 931 GGGTAGTCACGGGATGGACATTATGACTCCTGTAAATCCAAATGGATCCCCTGAAGACCC 990
||||||||| || |||||||| |||||| | | | | | || || | | |
Sbjct 918 GGGTAGTCATGGAATGGACATAATGACT--TCT---T-C---T-GA-----TG-ATA--C 959
Query 991 TAATTGTATAAAAACCACTGACCAACAGGGTGAGGAGGTAAACCTCTTTCAGCCTGCTAA 1050
|||||| | ||| | ||||||||||||||| |||| || || || |||||||| ||||
Sbjct 960 GAATTGTTTCAAATCTACTGACCAACAGGGTAAGGAAGTGAATCTGTTTCAGCCCGCTAG 1019
Query 1051 AGAGTTCATACCCGTCATTGAAGAGGTTTATAATAA-CCTCGTTGAG-ATAACT-AAATG 1107
||| |||||||| || || || ||||||| | | || ||| |||||| || | | ||| |
Sbjct 1020 AGAATTCATACCGGTAATCGACGAGGTTT-TCAGAACCCTTGTTGAGAAT-A-TGAAA-G 1075
Query 1108 -TATCAAAGGTGCAAAAGTAGAGAACCATAAGTTTTGTACTTCTGTACATTACCGTAATG 1166
||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| |
Sbjct 1076 ATATCAAAGGTGCAAAAGTAGAGAACCACAAGTTCTGTGCATCTGTACATTACCGTAACG 1135
Query 1167 TTGACGAGAAGGACTGGCCACTTGTTGCTCAACGCGTTCATGACCACCTGAAACGATACC 1226
||||||| ||||| |||||| || |||||||||| |||||||||||| |||||| |||||
Sbjct 1136 TTGACGAAAAGGATTGGCCAATTATTGCTCAACGTGTTCATGACCACTTGAAACAATACC 1195
Query 1227 CTCGTTTGCGTATAACTCACGGTAGAAAGGTTTTAGAGGTGCGTCCTGTGATTGAGTGGA 1286
||||| |||| ||||||| || || |||||||||||||| ||||||||||| || ||||
Sbjct 1196 CTCGTCTGCGGCTAACTCATGGGAGGAAGGTTTTAGAGGTTCGTCCTGTGATAGACTGGA 1255
Query 1287 ACAAAGGAAAAGCAGTAGAGTTTCTGTTAGAGTCTCTCGGATTAAGCAACAACGATGAGT 1346
||||||||| ||| || |||||||| ||||| ||||| |||||||||||||| || || |
Sbjct 1256 ACAAAGGAAGAGCGGTCGAGTTTCTATTAGAATCTCTTGGATTAAGCAACAAAGACGATT 1315
Query 1347 TCCTCCCAATCTTCATCGGAGATGACA-AGACCGATGAAGATGCATTCAAGGTACTGAGG 1405
| ||||| |||| ||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 1316 TGCTCCCCATCTACATTGGAGATGACACA-ACCGATGAAGATGCATTCAAGGTACTGAGA 1374
Query 1406 GAAGGGAACAGAGGATTT-GGAATATTGGTATCGTCTGTACCA-AAAGAAAGCAATGCAT 1463
|| |||||| |||| ||| || || || ||||||||| ||| | |||||||||||||| |
Sbjct 1375 GATGGGAACCGAGG-TTTCGGTATCTTAGTATCGTCTATAC-ATAAAGAAAGCAATGCGT 1432
Query 1464 TTTACTCTCTTAGAGACCCTTCCGAGGTGAAGAAGTTTCTCAAGACTTTGGTGAAATGGG 1523
||||||| |||||||| || || ||||||||||||||||| |||||||||||||||||||
Sbjct 1433 TTTACTCCCTTAGAGATCCATCAGAGGTGAAGAAGTTTCTAAAGACTTTGGTGAAATGGG 1492
Query 1524 GGAAGATGGA-AAG 1536
||| |||| |||
Sbjct 1493 CAAAGTTGGAGAAG 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66162755565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5