BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22600.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945865 jgi|Araly1|945865|scaffold_702094.1 1227 0.0
> Ahg945865 jgi|Araly1|945865|scaffold_702094.1
Length=861
Score = 1227 bits (664), Expect = 0.0
Identities = 773/825 (94%), Gaps = 9/825 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTTCTCTTTCTTCTCCCGCAAGAAACCATCTCGTCGATTCAATGATTTCTACGAA 60
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 21 ATGCCTTTCTCTTTCTTCTCCCGCAAGAAACCTTCTCGTCGCTTCAATGATTTCTACGAC 80
Query 61 GACTGGTCAAAAACCCTAACCGAAAACTGcctccctctcctccgtcaatcactttcctcc 120
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GACTGGTCCAAAACTCTAACCGAAAACTGCCTCCCTCTCCTCCGTCAATCACTTTCCTCC 140
Query 121 gccgcttccgcttccgtcctctcctccAACGTAGACCTCGTCCTCCGTCACCTAGTCTTA 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 141 GCCGCTTCTGCTTCCGTCCTCTCCTCCAACGTAGACCTCGTCCTTCGTCACCTAGTCTTA 200
Query 181 TACTACGAAACCCTAGATCTTGCTGCCGAT-CACAACACCATTCCTTACCTTCTCTTCCC 239
|||||||||||||||||||| || |||||| || |||||||| || ||||||||||||||
Sbjct 201 TACTACGAAACCCTAGATCTCGCCGCCGATCCA-AACACCATCCCGTACCTTCTCTTCCC 259
Query 240 TTCATGGCGTAACTCTCTCGAGACTCCGTTTCTTTTCCTCGGCGATATCCATCCTTACCT 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 260 TTCATGGCGCAACTCTCTCGAGACTCCGTTTCTTTTCCTCGGCGATATCCATCCTTATCT 319
Query 300 CCTCACCAATCTCCTCCGTTCTTTCATCGACCGTGAGAATCAAGATTCCGACGACGAAGA 359
|||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 320 CCTCACTAATCTCCTCCGTTCTTTCATCGATCGTGAGAATCAAGATT-C--CGACGAAGA 376
Query 360 CGAGGAAACTTCTCTTGATCTTGTGAATCAACCGTTAAAGATGACGATGGCGTGGAAAGA 419
||| || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 377 CGACGAGACTTCTCTTGATCTTATGAATCAACCGTTAAAGATGACGACGGCGTGGAAAGA 436
Query 420 TCCTTCTGATGAGTTGGTTAAAAGAATCGATCAGATTGAGTGTACAATGAGACTTATGGT 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 437 TCCTTCTGATGAGTTGGTTAAAAGAATCGATCAGATTGAGTGTACGATGAGACTTATGGT 496
Query 480 TCCTGGTTTAATGGATCGTATGAGGAAAACACAGAGAAGTTTCGTGGCTCGAGTTTCTGA 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 497 TCCTGGTTTAATGGATCGTATGAGGAAAGCACAGAGAAGTTTCGTGGCTCGAGTTTCTGA 556
Query 540 GAGTTGGGTCTCGTCGTATCAAGTTGGG-AAGAAGAAGAAGCTTACTGCGACGGTTGCGA 598
|| |||||||| |||||||||| ||||| |||||||||||||| | ||||||| | |
Sbjct 557 GAATTGGGTCTTGTCGTATCAA-TTGGGGAAGAAGAAGAAGCTCCCCGCGACGGCAGTGG 615
Query 599 CGGCTTCAACGTCGGTGGATGAAGCAGCAAAG-ATTGAGATGGAAGAGCTTGTGAGTATT 657
||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 616 TAGCTTCAACGTCGGTGGATGAAGCGGCCAAGGAA-GAGATGGAAGAGCTTGTGAGTATT 674
Query 658 TTCGTTGATGCGAATCGTTTGAGGAAGAGTGTGATTATGGACATTGTTGGAGCTACAAGT 717
|| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 675 TTTGTTGATGCCAATCGTTTGAGGAAGAGTGTGATCATGGACATTGTTGGAGCTACGAGT 734
Query 718 GAGCATCAAGCGGCTCTGTTTCTTGAGGGTTTATGTCAGTTTCTTGCTGGGTTTAAAGAT 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 735 GAGCATCAAGCGGCTCTGTTTCTTGAAGGTTTATGTCAGTTTCTTGCTGGGTTTAAAGAT 794
Query 778 CAGATTCTTCTTCAAGATTTTGAGATTCTTTCTTTGCCCAATTAA 822
||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 795 CAGGTTCTTCTTCAAGATTTCGAGATTCTTGCTTTGCCCAATTAA 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5