BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22620.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492606 jgi|Araly1|492606|fgenesh2_kg.7__2039__AT4G22620.1         614    2e-175


> Ahg492606 jgi|Araly1|492606|fgenesh2_kg.7__2039__AT4G22620.1
Length=447

 Score =  614 bits (332),  Expect = 2e-175
 Identities = 409/446 (92%), Gaps = 6/446 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGAGGCTCCGAGGTTTTAAGATCGGACACAGATTCGTCAAGATCTTCAAATGGATA  60
            ||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  1    ATGAAGAAGCTTCGAGGTTTCAAGATTGGACACAGGTTCGTCAAGATCTTCAAATGGATA  60

Query  61   ATCCGAAGTAGAAGAAACCAAACCGGGAAACGCCAATGCCTGACCGGAATTCTCAACCCG  120
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATCCGAAGTAGAAGAATCCAAACCGGGAAACGCCAATGCCTGACCGGAATTCTCAACCCG  120

Query  121  GTTACAAAAATCTACTCTTTAGCACGGCGGTGTCTCCGTCGTGGAGCTAATAGACTGTGC  180
            ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct  121  GTTACAAAAATCTACTCTTTAGCACGGCGGTGTATCCGTCGTGGAGCCAATAGACTGTGC  180

Query  181  GGAGGAATGAAACCGGGTCAGACCCGGCTTGGTAACGAACCGAAGACGCCGACAGTTCCA  240
            ||||||| |||||  | ||| |     |||||||||||||||||||||||| ||||||||
Sbjct  181  GGAGGAAAGAAACAAGTTCA-A-----CTTGGTAACGAACCGAAGACGCCGTCAGTTCCA  234

Query  241  AGAGGGCATTTAGTGGTTCATGTCGGTGAATCCGGTGAGGATACGCGACGTGTGGTGGTC  300
            | |||||||||||||||||||||||| || ||||| || ||||| || || |||||||| 
Sbjct  235  AAAGGGCATTTAGTGGTTCATGTCGGCGAGTCCGGCGATGATACACGGCGCGTGGTGGTT  294

Query  301  CCGGTGATTTATTTTAACCATCCTCTGTTCGGAGAGTTGTTGGAACAGGCAGAGCGGGTT  360
            ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  295  CCGGTGATTTACTTTAACCATCCTCTGTTCGGAGAGTTGTTGGAGCAGGCGGAGCGGGTT  354

Query  361  TACGGGTTTGAACAACCGGGTCGGATTATGATACCTTGTCGGGTTTCGGATTTTGAGAAG  420
            ||||||||||| |||||||||||||| | |||||| |||||||||||||||||||| |||
Sbjct  355  TACGGGTTTGATCAACCGGGTCGGATCACGATACCGTGTCGGGTTTCGGATTTTGAAAAG  414

Query  421  GTTCAGATGAGGATCGCTGCATGGGA  446
            ||||||||||||||||| ||||||||
Sbjct  415  GTTCAGATGAGGATCGCCGCATGGGA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5