BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22640.1

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492605 jgi|Araly1|492605|fgenesh2_kg.7__2038__AT4G22640.1         593    3e-169


> Ahg492605 jgi|Araly1|492605|fgenesh2_kg.7__2038__AT4G22640.1
Length=448

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 409/451 (91%), Gaps = 8/451 (2%)
 Strand=Plus/Plus

Query  27   AAAATATTAAACCTCTGTTTTTGCTGGCGATCATGGCTTACACAAACAAAGTTACGATAT  86
            |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||  | 
Sbjct  1    AAAAGATTAAACCTTTGTTTTTGCCGGCGATCATGGCTTACACAAACAAAGTTACGGCAG  60

Query  87   CAGCCGCGGTTGCGACAATGATGCTGTTTCTGGCGGTTACGATCGTGGATGCACAGTCAA  146
            | ||  ||||||||||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct  61   CGGCTACGGTTGCGACAGTGGTGCTGTTTCTAGCGGTTACGATTGTGGATGCACAGTCAA  120

Query  147  TGCCACCAATGCCAAAGTTTAATCCTGTGTGCGCGTTGGCGGATCTCCCAAACATCGTCC  206
            ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct  121  TGCCACCAATGCCAAAGTTGAATCCTGTGTGCGCGTTGGCGGAACTCCCAAATATCGTCC  180

Query  207  AACTTTGCTACTTTAACTTGGATTTGACGCCATCTGAAGAGTGCTGCAATGATCTCAAAT  266
            ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct  181  AACTTTGCTACTTTAACTTGGATTTGGTGCCATCTGAAGAGTGCTGCAATGATCTCAAAT  240

Query  267  CGTCGAGCACGATACAAGTGAATTGTCTCTGTGACAATTTCATTGCACATCCTTCCAATG  326
            |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  241  CGTCGAGCAATATACAAGTGAATTGTCTCTGCGACAATTTCATTGCACATCCTTCCAACG  300

Query  327  GCAATATCTCGCA-AGCTCGCTACGACCTGGTCAACAGCGCCTGTGGTGTTGCCGACAAA  385
            |||||||| |  | ||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct  301  GCAATATCACT-AGAGCTCGCTACGACCTAGTAAACAGCGCCTGTGGCGTTGCCGACAAA  359

Query  386  TTCGCATGTAAAGGTATCTTTTAAAC----ATTTTCATGGCTTGTCCCTTAGTATTTTGT  441
            || |||||||||||||| |||||| |    ||||||||||||| ||| ||||||||  ||
Sbjct  360  TTTGCATGTAAAGGTATGTTTTAATCTCTGATTTTCATGGCTTTTCCTTTAGTATT--GT  417

Query  442  TCAAACTACATTATGTTTTCAATAGAACAAA  472
            |||||||||||| |||||||||||| |||||
Sbjct  418  TCAAACTACATTTTGTTTTCAATAGGACAAA  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18467305076


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5