BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22660.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679 1491 0.0
Ahg945917 jgi|Araly1|945917|scaffold_702146.1 619 1e-176
Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1 545 2e-154
Ahg945916 jgi|Araly1|945916|scaffold_702145.1 503 1e-141
Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947 340 1e-92
Ahg337411 jgi|Araly1|337411|fgenesh1_pg.C_scaffold_1003976 108 1e-22
> Ahg354506 jgi|Araly1|354506|fgenesh1_pg.C_scaffold_7001679
Length=1296
Score = 1491 bits (807), Expect = 0.0
Identities = 963/1036 (93%), Gaps = 20/1036 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCAAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGG 120
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 61 GTTTTCAAACGCCTCAGTTTTGCTAATTTTCGACGAGCGAAATCGGTGTGTTCGTCTTGG 120
Query 121 TACTCTGCTTCGAAACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACTCTGCTTCGAAACAATGCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCC 180
Query 181 AAAGacaaaaacaacaacaaaaacaGTTCATGCACGAtttttttCAATCCCGAGGACAAA 240
|||||| ||| |||| | | | |||||||||| |||||||||||||||||||||
Sbjct 181 AAAGAC--AAA-AACAGC----A-A-TTCATGCACG---TTTTTCAATCCCGAGGACAAA 228
Query 241 GACCAACTT-TACCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTCTAGC 299
|| || ||| ||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 229 GA-TTTTTTATACAAAACGCAAGATCTTGGTGTGGAATTTGCCAAGAGTGTTTGTATAGC 287
Query 300 AACCTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATAATCTATACATTTTGAATCC 359
|||||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 288 AACCTACGGAAGTTGGCTTCTTATGCAAGATTCAAAGTATAATTTATACATTTTGAATCC 347
Query 360 ATTCACCTACGAGAAG-ATCGGTCTTCCCGCTATTGAATCACAACAAGTTGGCATGGTAA 418
||||||| | ||| || |||| |||||| ||| | |||||||||||| || ||||||||
Sbjct 348 ATTCACCAAAGAG-AGTATCGATCTTCCGGCTGTGGAATCACAACAACCTGCCATGGTAA 406
Query 419 AGGTTGACCAAACCATAGATGATGATTTTCTAACTTTCGACGATCACAACCACGTTAAGT 478
||||||| | ||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 407 AGGTTGAACGAACCATAGATGATGATTTTATCACTTTCGGCGATCACAACCACGTTAAGT 466
Query 479 TATTCAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAG 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TATTTAAAGGTAATAATACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAG 526
Query 539 AGTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTTTATGCCAAGAACGGAGATA 598
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 527 ATTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTTTATGCGAAGAAAGGAGATA 586
Query 599 AGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATC 646
Query 659 ACAAGCTTTACTCATTTAGCTACAGAAATCTTTTCACAATCCTAGATTTTTCTGGAGAGA 718
|||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 647 ACAAGCTTTACTCATTTAGCTACAGAGAGCTTTTCACAATCTTAGATTTTTCTGGAGAGA 706
Query 719 TTCCTCGAAA-AGCCTTTCAATGTTTTATGCATGTCTATAGATCTGAGTGGTTAAGTCCT 777
|||||||| | | |||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 707 TTCCTCGACAGA-CCTTTCAACGTTTTATGCATGTGTATAGATTTGAGTGGTTAAGTCCT 765
Query 778 CGTAGTCGTCAATTAAGTAATTCATGGTGCGTTGCTGAGACAAAACTTGTAGTCACAGTA 837
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 766 CGTAGTCGTCAACTAAGTAATTCATGGTGCCTTGCTGAGACAAAACTTGTAGTCACAGTA 825
Query 838 ACCGGAGATGTCCTCTTGGTTGAAAGAATGTTAAGACATTGGTCTAGAATCCAGTCATTC 897
||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 826 ACCGGGGATGCCCTCTTGGTTGAAAGAATGTTAAGACCTAGGTCTAGAATCCAGTCATTC 885
Query 898 AACGTCTACAAGTTTTATTCGTCAGGGACATTTCTT-GATAAATATGAACTTGCTGATTC 956
|||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||
Sbjct 886 AACGTCTACAAGTTTTATTCGTCAGGGA-ATTTTTTTGATAAATATGAACTTGCAGATTC 944
Query 957 TTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACCGTGCTCGCCAATGAAGTTGA 1016
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 945 TTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACTGTGCTCGCCAATGAAGTTGA 1004
Query 1017 GGGACTCCATAGAAAT 1032
||||||| ||||||||
Sbjct 1005 GGGACTCAATAGAAAT 1020
> Ahg945917 jgi|Araly1|945917|scaffold_702146.1
Length=1216
Score = 619 bits (335), Expect = 1e-176
Identities = 951/1232 (77%), Gaps = 108/1232 (9%)
Strand=Plus/Plus
Query 8 AGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTAGT-TTTC 66
||||||| ||||||||| |||||||||| |||||||||||||||||||| || || |||
Sbjct 25 AGAACCATAACCCTAATTCCTGGTCGGACCTTCCTCTAGATCTCTTGAATTTGGTGTTT- 83
Query 67 AAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGGTACTCT 126
||||||| |||||||||| ||| | || |||||| || |||||||||||||||||||||
Sbjct 84 GAACGCCTTAGCTTTGCTAGTTTCCAACGAGCCAAGTCCGTGTGTTCGTCTTGGTACTCT 143
Query 127 GCTTCGAAACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGac 186
||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 144 GCTTCGAGACAATGCGTGCCCAAAAAGCAGATCCCTTGGCTGATTCTCTTCCCCGAAGAC 203
Query 187 aa-aa-a-caacaacaa-aa-a-caGTT-CATG--CA-CGAtt--t-----tt-ttCAAT 228
|| || | ||||||||| || | || || || | ||| | || ||||||
Sbjct 204 AACAACAACAACAACAACAACAACAACAACAACAACAACAATTCATGCAAGTTGTTCAAT 263
Query 229 CCCGAGGACAAAGACCAACTTTACCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGT 288
||||| || ||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 264 CCCGATGAAAAACAAAAACTTTACAAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGT 323
Query 289 GTTTGTCTAGCAACCTATGGAAGTTGGCTCCTGATGCA-AGATTCAAAGTATAATCTATA 347
|| |||||||||||||||||||| |||||||| | | | |||| || ||||||||| ||
Sbjct 324 GTGTGTCTAGCAACCTATGGAAGCTGGCTCCTTACG-AGAGATCCACGGTATAATCTCTA 382
Query 348 CATTTTGAATCCATTCACCTACGAGAAG-ATCGGTCTTCCCGCTATTGAATCACAACAAG 406
||||||||||| || ||| | || ||| || | ||| || || | || |||||||
Sbjct 383 CATTTTGAATCTTTTTACCCAAGA-AAGGATTGATCTGCCATCTGTAGAGTCACAAC--- 438
Query 407 TTGGCATGGTAAAGGTTGACCAAACCATAGATGAT-GATTTTCTAAC-TTTCGACG-ATC 463
|||| || |||| | || | | |||||||| | ||| | | | |||| | | |||
Sbjct 439 TTGGAATAACAAAGATCGAGCGAGGTTTAGATGATTGGTTT-C-A-CGTTTCTAAGGATC 495
Query 464 ACAACCAC-GTTAAGTTATTCAAAG-G-TAATA-ATACCGTACGTACCCCTGTGTTTTGG 519
|| ||| | | | || ||||| | | | || ||| | | |||||||| |||||
Sbjct 496 ACTTCCAAAGGCA-G--AT-CAAAGAGCTT-TGCAT-CCG-A--T-CCCCTGTGATTTGG 545
Query 520 ATTGACGAGAAAACCAAAGAGTACATAGCTCTGTGGGGGCTTGGATATTGGTGTGTGGTT 579
|||||||||||||||||||| || |||| ||| ||||| |||||| || |||||| ||
Sbjct 546 ATTGACGAGAAAACCAAAGACTATATAGTTCTTTGGGGACTTGGAGGTTTGTGTGTCCTT 605
Query 580 TATGCCAAGAACGGAGATAA-GTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT 638
||| ||||||| ||||||| | ||||||||| |||| |||||| | | | | |||
Sbjct 606 TATTCCAAGAAAGGAGATACCGC-GTGGAATCAGCTTCCGGAAATT-TCTCAC-TG-TCT 661
Query 639 TGACATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTA-CAGAAA-TCTTTTCAC 695
| ||||||||||||| |||||||||||||||| | | |||| | | |||| | |||||||
Sbjct 662 TCACATGGTTTACAAAGATCACAAGCTTTACTTC-TCTAGC-AGC-GAAAATATTTTCAC 718
Query 696 AATCCTAGATTTTTCTGGAGAGATTCCTCGA-AAAGCCTTTCAATGTTTTATGCATGTCT 754
|||| || |||||||| ||||| |||||| | ||| ||||||||| |||| || | |
Sbjct 719 AATCTTAAATTTTTCTAGAGAGGTTCCTCAACAAATT-TTTCAATGTGGTATGGATCTGT 777
Query 755 -A-TAGATCT-GAGTG-GT-TAAGTCCTCGTAGTCGTCAATTAAGTAATTCATGGTGCGT 809
| || || | || || || || ||| |||| ||| || ||||||||||||||| ||
Sbjct 778 TAATA-AT-TAGAATGAGTCTAGGTCGTCGTTGTCATCGGCTAAGTAATTCATGGTTTGT 835
Query 810 TGCTGAGACAAAACTTGTAGTCACAGTAACCGGAGATGTCCTCTTGG-TTGAAAGAATGT 868
|| ||||||||||||||||||||||||||| ||| ||||||| | || || |||||||||
Sbjct 836 TGATGAGACAAAACTTGTAGTCACAGTAACAGGAAATGTCCT-TAGGGTTCAAAGAATGT 894
Query 869 TAAGACATTGGTCTAGAATCCAGTCATTCAACGTCTACAA-GTTTTATTCGTCAGGGACA 927
|||||| | ||||| |||||||||||||| |||| || ||||| | || | |
Sbjct 895 TAAGACCTAGGTCTGGAATCCAGTCATTCCGTGTCTGTAAAGTTTTCC-C--CA---A-A 947
Query 928 TTTCTTGATAAATATGAACTTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTA 987
| | || | | | | ||| |||||||||||||||||||| ||||||||||| ||
Sbjct 948 TAT---GA-AGA-A-G---TTG---ATTCTTTGGGCGACGAGGCACTGCTTTTGGATTTA 995
Query 988 GGCATCACCGTGCTCGCCAATGA-AGTTGAGGGACTCCATAGAAATA-CTATATATTTCA 1045
|| |||| ||||||| |||||| | ||||||| ||| | |||||| | || ||| |||
Sbjct 996 GGTGTCACTGTGCTCGTCAATGACA-TTGAGGGGCTCAAAAGAAATTGC-ATCTATCTCA 1053
Query 1046 GTGATAGCCATG-ACACGACCACAAAA-GATCTCTTTCTGTTCAATTACGAGACACGGGA 1103
||| ||| |||| | | || | |||| | | ||||| | || |||| ||||||| |
Sbjct 1054 GTGGTAGTCATGGAAA-GAAGA-AAAATGGTATCTTTATCTTTAATTTCGAGACAAAAAA 1111
Query 1104 GATGGAGCCACTGCACAAATTTGATTTCGATTGTTCGTTACTTGAACTCTCT-G--CTCG 1160
||||||| |||| ||| |||| |||||||||| | || |||||||| | ||||
Sbjct 1112 GATGGAGTTGCTGCG-AAA----ATTT-GATTGTTCGTCAGTTCAACTCTCTAGAGCTCG 1165
Query 1161 ATGGTTCTTACCAAGCTTTT-CGCATACATGA 1191
||||||||||||||| ||| |||||||||||
Sbjct 1166 ATGGTTCTTACCAAG-TTTAACGCATACATGA 1196
> Ahg492647 jgi|Araly1|492647|fgenesh2_kg.7__2080__AT4G22180.1
Length=1197
Score = 545 bits (295), Expect = 2e-154
Identities = 820/1063 (77%), Gaps = 78/1063 (7%)
Strand=Plus/Plus
Query 17 ACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTT-AGTT-TTCAAACGCCT 74
|||| ||| |||||||||| |||||||||||||||||| |||| | || ||| |||||||
Sbjct 51 ACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTG-ACTTCA-TTGTTCGAACGCCT 107
Query 75 CAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGGTACTCTGCTTCGAA 134
||||||||||||||| | || ||| ||||| || |||||||||||| |||| || |||
Sbjct 108 CAGCTTTGCTAATTTCCAACGAGCTAAATCCGTCTGTTCGTCTTGGCACTCCGCATCGCG 167
Query 135 ACAATCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCCCAAAGacaaaaacaa 194
||||||||| ||| | | |||||||||||||| || |||||||| ||| || ||||
Sbjct 168 ACAATCCGTTCCC--ATA-CAGATCCCTTGGCTAATTCTCTTCCCGGAAG---AAGACAA 221
Query 195 caacaaaaacaGTTCATGCACGAtttttttCAATCCCGAGGACAAAGACCAACTTTACCA 254
|||||| |||| |||||||||| || |||||||||||||| |||| | || ||||| |
Sbjct 222 CAACAACAACAATTCATGCACG---TTGTTCAATCCCGAGGAAAAAGGCAAAGTTTACAA 278
Query 255 AACGCAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGT-CTAGCAACCTATGGAAGTT 313
|||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct 279 AACGAAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTACT-GCAACCTACGGAAGCT 337
Query 314 GGCTCCTGATGCAAGATTCAAAGTATAATCTATACATTTTGAATCCATTCACCTACGAGA 373
||||||| |||| |||| || ||||||||| || ||| |||||| ||||||| |||||
Sbjct 338 GGCTCCTTATGCGAGATCCACCGTATAATCTCTATATTCTGAATCTATTCACCCGCGAGA 397
Query 374 AGATCGGTCTTCC-CGCTATTGAATCACAACAAGTTGGCATGGTAAAGGTTGACCAAACC 432
|||| ||| || | || |||| ||||||| |||| ||| |||| | || | ||||
Sbjct 398 GGATCAATCTACCTC-CTTTTGAGTCACAAC---TTGGGATGACAAAGATCGAGCGAACC 453
Query 433 ATAGATGATGATTTTCTAACTTTCGACGATCACAACCACGTTA---AGTTATT-CAAAGG 488
||||||||| | |||| | |||| || || || ||| || ||| | |||| |
Sbjct 454 ATAGATGATCAGTTTCGCA-TTTC-ACCC-CATTACAACGGTAGGGAGT-ACCACAAACG 509
Query 489 TAATA-A-TACCGTACGTACCCCTGTGTTTTGGATTGACGAGAAAACCAAAGAGTACATA 546
|| || | ||| | | |||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 510 TATTAGAATACA--A--T-CCCCTGTGTTTTGGATCGACGAGAAAACCAAAGATTACGTA 564
Query 547 GCTCTGTGGGGGCTTGGATA-TTGGTGTGTGGTTTATGCCAAGAACGGAGATAAGTTGT- 604
| | | ||||| |||||| | || ||||||||||||| ||||||| |||||||| | ||
Sbjct 565 GTTATATGGGGACTTGGA-AGTTTGTGTGTGGTTTATTCCAAGAAAGGAGATAAAT-GTT 622
Query 605 GGAATCAAATTCCAGAAATTATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGC 664
|||||||||||||||||| | | | ||| || | ||||||||||||||||||||||||
Sbjct 623 GGAATCAAATTCCAGAAAGT-TC--ACATTGTCATCACATGGTTTACAAGGATCACAAGC 679
Query 665 TTTAC-TCATTTA-G-CTA-C-AGAAATCTT--TTCACAATCCTAGATTTTTCTGGAGAG 717
||||| || | | | ||| | | |||| | |||| |||| | ||||| ||| |||||
Sbjct 680 TTTACCTC-TCCAAGTCTAACTACAAATATGAATTCAGAATCTTTGATTTCTCTAGAGAG 738
Query 718 ATTCCTCGA-AAAGCCTTTCAATGTTTTATGCATGTCTATA-G-ATCTGAGTGGTTAAGT 774
||||| | | ||| |||||||| ||| | | ||| | | | | | || | |||| |
Sbjct 739 ATTCCGCAACAAA-CCTTTCAAGGTTGTGT-CAT-TATGCAAGGA-CTTACA--TTAAAT 792
Query 775 CCTCGTAGTCGTCAATTAAGTAATTCATG--GTGCGT-TGCTGAGACAAAACTTGTAGTC 831
| || | | ||||| | || || | | || | | | ||| ||||||||||| |||
Sbjct 793 CATCATCCTGGTCAACCAGGTTATCCCTTTAGTAC-TAT--TGATACAAAACTTGTTGTC 849
Query 832 ACAGTAACCGGAGATGTCCTCTTGGTTGAAAGAAT-GTTAAGACATTGGTCTAGAATC-- 888
|||||||| |||||||||||| |||||| ||||| || | || | | ||||||
Sbjct 850 ACAGTAACTGGAGATGTCCTCAAGGTTGATAGAATAGTGGA-ACGTAACACCAGAATCTG 908
Query 889 CAG-TCATTCAACGTCTACAAGTTTTATTCGTCAGG-GACATTTCTTGATAAATATGAAC 946
||| | ||| ||||||||||| ||||||| || || | | | | || || ||||||
Sbjct 909 CAGATTTTTCGACGTCTACAAGGTTTATTCATC-GGTGTCCTATAA-GA-AA-TATGAAA 964
Query 947 TTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACCGTGCTCGCCA 1006
| ||| ||||||||| |||||||||| |||||||||||||| ||||| |||| ||||
Sbjct 965 AAGTTGAATCTTTGGGCAACGAGGCAATTCTTTTGGATCTAGGTATCACTATGCTAGCCA 1024
Query 1007 ATGA-AGTTGAGGGACTCCATAGAAATACTATATATTTCAGTG 1048
|||| | ||| ||||||| | | |||| | || ||||||||||
Sbjct 1025 ATGACA-TTGTGGGACTCGAAAAAAATTCCATCTATTTCAGTG 1066
> Ahg945916 jgi|Araly1|945916|scaffold_702145.1
Length=1249
Score = 503 bits (272), Expect = 1e-141
Identities = 915/1209 (76%), Gaps = 109/1209 (9%)
Strand=Plus/Plus
Query 17 ACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTT-AGTTTTCAAACGCCTC 75
|||| ||| |||||||||| |||||||||||||||||| |||| ||| ||| ||||||||
Sbjct 71 ACCC-AATTCCTGGTCGGAGCTTCCTCTAGATCTCTTG-ACTTCAGTGTTCGAACGCCTC 128
Query 76 AGCTTTGCTAATTTTCGA-CAAGCCAAA-TCGGTGTGTTCGTCTTGGTACTCTGCTTCGA 133
||||||||||| |||| | | ||| ||| || || ||||| | |||| |||| |||||||
Sbjct 129 AGCTTTGCTAA-TTTCCATCGAGCTAAATTC-GTCTGTTCATTTTGGCACTCCGCTTCGA 186
Query 134 AAC-AATCCGTGCCCAAAAATCAGATCC-CTTGGCTGATGCTCTTCCCCAAAGacaaaaa 191
|| ||| | | ||| ||| |||| || ||||||||| |||||||||| |||| ||
Sbjct 187 GACAAAT-CAT-CCC-CAAA-CAGA-CCAGTTGGCTGATTCTCTTCCCCAGAGAC---AA 238
Query 192 caacaacaaaaacaGTTCATGCACGAtttttttCAATCCCGAGGACAAAGACCAACTTTA 251
||||||| ||| ||||||||| || |||||||||||||| ||| || |||||||
Sbjct 239 TGACAACAATAAC---TCATGCACG---TTGTTCAATCCCGAGGAGAAACACAAACTTTA 292
Query 252 CCAAACGCAAGATCTTGGTGTTGAATTTGCAAAGAGTGTTTGTCTA-GCAACCTATGGAA 310
| ||||| |||||||||||| |||||||||||||| ||||| | |||||||||||||
Sbjct 293 CAAAACGAAAGATCTTGGTGAAGAATTTGCAAAGAGCCTTTGT-AAGGCAACCTATGGAA 351
Query 311 GTTGGCTCCTGATGCAAGATTCAAAGTATAATCTATACATTTTGAATCCATTCA-CCTAC 369
|||||||||| |||| |||| | || |||| |||||||||||||| ||||| || |
Sbjct 352 GTTGGCTCCTTATGCGAGATCCTCGGTTTAATTTATACATTTTGAATATATTCACCCGA- 410
Query 370 GAGAAGATCGGTCTTCC-CGCTATTGAATCACAACAAGTTGGCATGGTAAAGGTTGACCA 428
|||| |||| ||| || | || | || ||||||| |||| ||| |||| | || |
Sbjct 411 GAGAGGATCAATCTACCTC-CTGTGGAGTCACAAC---TTGGAATGACAAAGATGGAGCG 466
Query 429 AACCATAGATGA-TGATTT-TC-TAACTTTC-GACGATCACAACCACG-TTA--AGTTA- 480
|||||||||||| || ||| | | | |||| |||||||||| || | | | || |
Sbjct 467 AACCATAGATGATTGCTTTCGCATTA-TTTCACACGATCACAA-CATGATCAGTAGGGAG 524
Query 481 TTCAAAGGTAATAATACCGTACGTACCC-CTGTGTTTTGGATTGACGAGAAAACCAAAGA 539
| || |||| | ||| || | |||| |||||||||||| |||||||||||||||||
Sbjct 525 TACATAGGTCTTTATA---TA-GGACCCTGTGTGTTTTGGATCGACGAGAAAACCAAAGA 580
Query 540 GTACATAGCTCTGTGGGGGCTTGG-ATATTGGTGTGTGGTTTATGCCAAGAACGGAGATA 598
||||||| | | ||||| ||||| | | |||| |||||||||| ||||||| |||||||
Sbjct 581 TTACATAGTTATATGGGGACTTGGAAGA-TGGTCTGTGGTTTATTCCAAGAAAGGAGATA 639
Query 599 AGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT-TGACATGGTTTACAAGGAT 657
| ||||||||| ||||| | || |||| ||||| | | ||||||||||||||| |||
Sbjct 640 CCTCGTGGAATCAGATTCC-GGAA--ATTTCAGATTGT-TGTGACATGGTTTACAAAGAT 695
Query 658 CACAAGCTTTAC-TCATTTAG--CT-AC-AGAAATCT--TTTCACAATCCTAGATTTTTC 710
||||||||||| || | | | || | | ||| | ||||| |||| | ||||| ||
Sbjct 696 TACAAGCTTTACTTC-TCTGGCTCTGGCTACCAATGTGATTTCAGAATCTTTGATTTCTC 754
Query 711 TGGAGAGATTCCTCGAA-AAGCCTTTCAATGT-TT-T-ATGCATGTCTATA-GATCTGAG 765
| |||||| ||| | || || |||||||| || || | || ||| | | | || || |
Sbjct 755 TAGAGAGACTCCGC-AACAAACCTTTCAAGGTATTGTCAT-TATG-C-A-AGGA-CTTA- 807
Query 766 TGGTTAAGTCCTCGT-AGTCGTCAATTAAG-TAATTCATGGTGCGTTGCTGAG-ACAAAA 822
| |||| || |||| | | ||||| | | | |||| ||| || | || ||||||
Sbjct 808 T-ATTAAATCATCGTCA-TGGTCAACCAGGCT-ATTCCCACTGCACTG-TTAGTACAAAA 863
Query 823 CTTGTAGTCACAGTAACCGGAGATGTCCTCTTGGTTGAAAGAATGTTAAGA-CATTGGTC 881
|||||||||||||||| |||||||||||| |||||| ||||| | || | | |
Sbjct 864 CTTGTAGTCACAGTAAATGGAGATGTCCTCAAGGTTGACAGAAT-ATGGGAGCGTAAAAC 922
Query 882 TAGAA--TCCA-GTCATTCAACGTCTACAAGTTTTATTCGTCAGGGACATTTCTTGATA- 937
|||| | || || || |||| |||||| ||||||| ||| | | | ||| | |
Sbjct 923 CAGAATTTGCAGGTTTTTTGACGTATACAAGGTTTATTCATCA--G--AGTCCTT-AAAG 977
Query 938 AA-TATGAACTTGCTGATTCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGCATCACC 996
|| |||||| | ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 978 AACTATGAAAAAGTTGAATCTTTGGGCGACGAGGCAATGCTTTTGGATCTAGGTATCACT 1037
Query 997 GTGCTCGCCAATGA-AGTTGAGGGACTCCATAGAAATA-CTATATATTTCAGTGATAGCC 1054
|||||||||||||| | ||||||| ||| | |||||| | || |||||||||| ||| |
Sbjct 1038 GTGCTCGCCAATGACA-TTGAGGGGCTCAAAAGAAATTGC-ATCTATTTCAGTGGTAGTC 1095
Query 1055 ATGACACGACCACAAAAGATCTCTTTCTGTTCAAT-TACGAGACACGGGAGATGGAGCCA 1113
||| | | || | ||| ||| | |||||| | |||||||| | | ||||||| |
Sbjct 1096 TTGAAAATATCATTCATGATAAATTTATCTTCAATAT-CGAGACACAGAAAATGGAGCGA 1154
Query 1114 CTGCACAAATTTGATTTCGATTGTTCGTTACTTGAACTCTCT-G--CTCGATGGTTCTTA 1170
|||||||| |||||| | || || | || |||||||| | ||||||||||||||
Sbjct 1155 GTGCACAAACTTGATT--G-TTCATC-TG-CTC-AACTCTCTAGTGCTCGATGGTTCTTA 1208
Query 1171 CCAAGCTTT 1179
||||| |||
Sbjct 1209 CCAAG-TTT 1216
> Ahg889961 jgi|Araly1|889961|Al_scaffold_0007_1947
Length=1095
Score = 340 bits (184), Expect = 1e-92
Identities = 325/390 (83%), Gaps = 21/390 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAACCAAAACCCTAATACCTGGTCGGATCTTCCTCTAGATCTCTTGAACTTA 60
|||||||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACTATAACCCTAATTCTTGGTCGGAGCTTCCTCTAGATCTCTTGAACTTA 60
Query 61 GTTTTCAAACGCCTCAGCTTTGCTAATTTTCGACAAGCCAAATCGGTGTGTTCGTCTTGG 120
|||||| |||||||||||||||||||||| | || ||| ||||| |||||||||||||||
Sbjct 61 GTTTTCGAACGCCTCAGCTTTGCTAATTTCCAACGAGCTAAATCAGTGTGTTCGTCTTGG 120
Query 121 TACTCTGCTTCGAAACAA-TCCGTGCCCAAAAATCAGATCCCTTGGCTGATGCTCTTCCC 179
||||||||||| | |||| || ||||| |||||||| |||| ||||||||| ||||||||
Sbjct 121 TACTCTGCTTCCAGACAAGTC-GTGCCAAAAAATCATATCCATTGGCTGATTCTCTTCCC 179
Query 180 -C-A-AAGacaaaaacaacaacaaaaacaGTTCATGCACGAtttttttCAATCCCGAGGA 236
| | || |||| |||||||||||||| |||||||||| || || ||||||||||||
Sbjct 180 TCGAGAAAACAACAACAACAACAAAAA---TTCATGCACG-TTGTT--CAATCCCGAGGA 233
Query 237 CAAAGACCAACTTTACCAAACGCAAGAT------CTTGGTGTTGAATTTGCAAAGA-GTG 289
||||| |||||||| |||| |||||| ||||||| ||||||||||| | |||
Sbjct 234 AAAAGAAAAACTTTACAAAACCCAAGATTTTGATCTTGGTGAAGAATTTGCAAA-ATGTG 292
Query 290 TTTGTCTAGCAACCTATGGAAGTTGGCTCCTGATGCAAGATTCAAAGTATAATCTATACA 349
||| |||||||||||||||||||| || ||||||||| | || |||||| ||||
Sbjct 293 AATGTAGGGCAACCTATGGAAGTTGGCTTCTAATGCAAGATCCTCTGTTTAATCTCTACA 352
Query 350 TTTTGAATC-CATTCACCTACGAGAAGATC 378
|| |||||| | || ||| |||||| ||||
Sbjct 353 TTGTGAATCTCTTT-ACCAACGAGAGGATC 381
Score = 122 bits (66), Expect = 4e-27
Identities = 169/217 (78%), Gaps = 13/217 (6%)
Strand=Plus/Plus
Query 508 CCTGTGTTTTGGATTGACGAGAAAACCAAAGAGTACATAGCTCTGTGGGGGCTTGGATAT 567
|||||||||||||||||||||||||||||||| || ||| ||| ||||| ||| || ||
Sbjct 478 CCTGTGTTTTGGATTGACGAGAAAACCAAAGATTATGTAGTTCTTTGGGGACTTAGAGAT 537
Query 568 TGGTGTGTGGTTTATGCCAAGAACGGAGATAAGT-TGTGGAATCAAATTCCAGAAATT-- 624
|||||||| ||||| ||||||| ||||||| | | ||||||||||| || ||| |
Sbjct 538 TGGTGTGTATTTTATTCCAAGAAAGGAGATACCTCT-TGGAATCAAATCCCTCAAACTCC 596
Query 625 ATTTTAGATTCTCTTGACATGGTTTACAAGGATCACAAGCTTTACT-CATTTAG-CTACA 682
| || | ||| | | | | |||||||||||||||||||||||| | | || ||||
Sbjct 597 AGATT-G-TTCCCGT-A--TCCTTTACAAGGATCACAAGCTTTACTTCCT--AGGCTACT 649
Query 683 GAAATCTTTTCACAATCCTAGATTTTTCTGGAGAGAT 719
|| ||||| |||| | ||| |||||||||||||
Sbjct 650 TCCATAGTTTCAAAATCTTCGATCTTTCTGGAGAGAT 686
> Ahg337411 jgi|Araly1|337411|fgenesh1_pg.C_scaffold_1003976
Length=1032
Score = 108 bits (58), Expect = 1e-22
Identities = 158/204 (77%), Gaps = 15/204 (7%)
Strand=Plus/Plus
Query 526 GAGAAAACCAAAGAGTA-CATAGCTCTG-TGGGGGCTTGGATATTGGTGTGTGGTTTATG 583
|||||||||||||| || | ||| | || | |||| || || |||||||||| |||||
Sbjct 398 GAGAAAACCAAAGATTATC-TAG-T-TGTTTGGGGATTAGAGATTGGTGTGTAGTTTACA 454
Query 584 CCAAGAACGGAGATAAGTTGTGGAATCAAATTCCAGAAATTATTTTAGATTCTCT-TGAC 642
|||||| ||||||| || ||||| |||| ||| | || | || ||||| | | ||
Sbjct 455 TCAAGAAAGGAGATACCTTCTGGAACCAAA-TCCCGCAA--ACTTCAGATTGT-TACCAC 510
Query 643 ATGGTTTACAAGGATCACAAGCTTTACT-CATTTAGCTACAGAAA---TCTTTTCACAAT 698
|||||||||||||||||||||||||||| | || ||||||| | | |||| | |||
Sbjct 511 ATGGTTTACAAGGATCACAAGCTTTACTTC-TTAAGCTACATTATGGGTATTTTTAAAAT 569
Query 699 CCTAGATTTTTCTGGAGAGATTCC 722
| | |||||||||||||||| |||
Sbjct 570 CTTCGATTTTTCTGGAGAGACTCC 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5