BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22666.1
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492604 jgi|Araly1|492604|fgenesh2_kg.7__2037__AT4G22666.1 843 0.0
Ahg889909 jgi|Araly1|889909|Al_scaffold_0007_1895 372 2e-102
> Ahg492604 jgi|Araly1|492604|fgenesh2_kg.7__2037__AT4G22666.1
Length=589
Score = 843 bits (456), Expect = 0.0
Identities = 547/591 (93%), Gaps = 6/591 (1%)
Strand=Plus/Plus
Query 12 ATGCAGTGTTTAAGAAGTCACATACGAAAAAGAAAGTGAG---ATAATAATCCaaaaaaa 68
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTAGTGTTTAAGAAGTCACATACGAAAAAGAAAGTGAGATAATAATAATCCAAAAAAA 60
Query 69 aaaTC-CATATTTTTGCCAACGTTTTTAGACGATCAAATGGCTTACACTAACCAAATTTC 127
||| | | | |||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 61 AAA-CTCTTGTTTTTGCCAACG-TTTTAGACGATCAAATGGCTTACATTTACCAAATTTC 118
Query 128 AGCGGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTATTAGCTGAGCCACAGTCAACGAT 187
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 119 AGCAGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTATTAGCTGACCCACAGTCACCGAT 178
Query 188 GTTTCCAGAGATGACTCCTGAATGTGCCACGGTTATGCCTGACCTGCTCGAAAAGTGTTT 247
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTTTCCCGATATGACTCCTGAATGTGCCACGGTTATGCCTGACCTGCTCGAAAAGTGTTT 238
Query 248 TGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGCACCGATCTAAAATCCGCAACCTC 307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGCACCGATCTAAAATCCGCAACCTC 298
Query 308 AACGCAAGTGACTTGTCTTTGTGATAACTACATAGCAAACCCCGCCGTTTCAAACATCAC 367
||||||||| ||||| ||||||||||||||||| ||||| || |||||| | ||||||||
Sbjct 299 AACGCAAGTCACTTGCCTTTGTGATAACTACATTGCAAATCCGGCCGTTGCGAACATCAC 358
Query 368 CGGACCTTACTCCAAAGCAATCACAACTAAATGTGGCGTTTTCGACAAATACTCTTGTGA 427
|||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||
Sbjct 359 TGGACCTTACTCCAAAGCAATCACAACCAAATGCGGCGTTTTCGACAAATTCTCTTGCGA 418
Query 428 CGGTACTAGTAAAGGAGGAGAAGAAAAGAAAGGAGGAAGCAGCAGTAGCAATGGTAAAGA 487
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 419 CGGTACTAGTAAAGGAGGAGAAGAAAAGAAAGGAGGAAGCAGCAGTAGCAACGGCAAAGG 478
Query 488 CAATGGCAAGAGTGAGGGAAATGGAGGAAGAGCGAACTCGGTTGCTGCATCAATGGCTAT 547
|||||||| |||| ||||||||||||||| | ||||| ||||||||||| |||||||||
Sbjct 479 CAATGGCACGAGTCAGGGAAATGGAGGAACAACGAACAAGGTTGCTGCATTAATGGCTAT 538
Query 548 GTTTGGTTTGCTTGCAAGTCTCGTCTTCGTAATGTTTTAATTTAGTTATTT 598
|||||||||| |||||||||| ||||| || ||||||| ||||||||||||
Sbjct 539 GTTTGGTTTGGTTGCAAGTCTGGTCTTTGTTATGTTTTGATTTAGTTATTT 589
> Ahg889909 jgi|Araly1|889909|Al_scaffold_0007_1895
Length=534
Score = 372 bits (201), Expect = 2e-102
Identities = 221/231 (96%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 105 ATGGCTTACACTAACCAAATTTCAGCGGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTA 164
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTACATTTACCAAATTTCAGCAGTTGTGTTTCTAGCGGTTGCGATTGCTCCGCTA 60
Query 165 TTAGCTGAGCCACAGTCAACGATGTTTCCAGAGATGACTCCTGAATGTGCCACGGTTATG 224
|||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 61 TTAGCTGACCCACAGTCACCGATGTTTCCCGATATGACTCCTGAATGTGCCACGGTTATG 120
Query 225 CCTGACCTGCTCGAAAAGTGTTTTGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGC 284
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTGACCTGCTCGAAAAGTGTTTCGCAACCGGTAGTGTGACGCCAACAGAAGATTGCTGC 180
Query 285 ACCGATCTAAAATCCGCAACCTCAACGCAAGTGACTTGTCTTTGTGATAAC 335
|||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 ACCGATCTAAAATCCGCAACCTCAACGCAAGTCACTTGCCTTTGTGATAAC 231
Score = 344 bits (186), Expect = 5e-94
Identities = 234/258 (91%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 328 GTGATAACTACATAGCAAACCCCGCCGTTTCAAACATCACCGGACCTTACTCCAAAGCAA 387
||||||||||||| ||||| || |||||| | |||||||| |||||||||||||||||||
Sbjct 275 GTGATAACTACATTGCAAATCCGGCCGTTGCGAACATCACTGGACCTTACTCCAAAGCAA 334
Query 388 TCACAACTAAATGTGGCGTTTTCGACAAATACTCTTGTGACGGTACTAGTAAAGGAGGAG 447
||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 335 TCACAACCAAATGCGGCGTTTTCGACAAATTCTCTTGCGACGGTACTAGTAAAGGAGGAG 394
Query 448 AAGAAAAGAAAGGAGGAAGCAGCAGTAGCAATGGTAAAGACAATGGCAAGAGTGAGGGAA 507
||||||||||||||||||||||||||||||| || |||| |||||||| |||| ||||||
Sbjct 395 AAGAAAAGAAAGGAGGAAGCAGCAGTAGCAACGGCAAAGGCAATGGCACGAGTCAGGGAA 454
Query 508 ATGGAGGAAGAGCGAACTCGGTTGCTGCATCAATGGCTATGTTTGGTTTGCTTGCAAGTC 567
||||||||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 455 ATGGAGGAACAACGAACAAGGTTGCTGCATTAATGGCTATGTTTGGTTTGGTTGCAAGTC 514
Query 568 TCGTCTTCGTAATGTTTT 585
| ||||| || |||||||
Sbjct 515 TGGTCTTTGTTATGTTTT 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26991025236
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5