BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22670.1
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492602 jgi|Araly1|492602|fgenesh2_kg.7__2035__AT4G22670.1 2102 0.0
> Ahg492602 jgi|Araly1|492602|fgenesh2_kg.7__2035__AT4G22670.1
Length=1576
Score = 2102 bits (1138), Expect = 0.0
Identities = 1503/1659 (91%), Gaps = 106/1659 (6%)
Strand=Plus/Plus
Query 25 TTCCCCAAATTCTCGAAATCG-AA-ACACGACTTAAAAC-GAAAAAGACGAGACTTTTAA 81
||| ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||
Sbjct 1 TTCTCCAAATTCTCGAAATCGAAACACACGACTT-AAACAGAAAAAGACGAGACTTTTAA 59
Query 82 CACTCAGACCTAAACCAACACTCTTCCTCTTTCTATCTCTCTCTCGCCGATCGGAAGCAG 141
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 60 CACTCAGACCTAAACCAACACTCTTCCTC--T-T-TCTCTCTCTCGCCGATCGGAAGCAG 115
Query 142 A--TTTTTCTCAAAAGGATGGATTCAACGAAGCTTAGTGAGCTAAAGGTCTTCATCGATC 199
| |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 116 ATTTTTTTCTC-GAAGGATGGATTCAACGAAGCTTAGTGAACTCAAGGTCTTCATCGATC 174
Query 200 AATGCAAGTCTGACCCTTCCCTTCTCACTACTCCTTCACTCTCCTTCTTCCGTGACTATC 259
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 175 AATGCAAGTCTGACCCTTCTCTTCTCACTACTCCTTCCCTCTCCTTCTTCCGCGACTATC 234
Query 260 TCGAGAGTCTTGGTGCTAAGATACCTACTGGTGTC-CATGAAGAAGACAAAGACACTAAG 318
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 235 TCGAGAGTCTTGGTGCTAAGATACCTACTGGTG-CTCATGAAGAAGACAAAGACACCAAG 293
Query 319 CCGAGGAGTTTCGTAGTGGAAGAGAGTGATGATGATATGGATGAAACTGAAGAAGTAAAA 378
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 294 ACGAGGAGTTTCGTAGTGGAAGAGAGTGATGATGATATGGAGGAAACTGAAGAAGCGAAA 353
Query 379 CCGAAAGTGGAGGAAGAAGAAGAAGAGGATGAGATTGTTGAATCTGATGTAGAGCTTGAA 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCGAAAGTGGAGGAAGAAGAAGAAGAGGATGAGATTGTTGAATCTGATGTAGAGCTTGAA 413
Query 439 GGAGACACTGTTGAGCCTGATAATGATCCTCCTCAGAAGATGGGGGATTCATCAGTGGAG 498
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGAGACACTGTTGAACCTGATAATGATCCTCCTCAGAAGATGGGGGATTCATCAGTGGAG 473
Query 499 GTGACTGATGAGAATCGTGAAGCTGCTCAAGAAGCTAAGGGCAAAGCCATGGAGGCCCTT 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTGACTGATGAGAATCGTGAAGCTGCTCAAGAAGCTAAGGGCAAAGCCATGGAGGCCCTT 533
Query 559 TCTGAAGGAAACTTTGATGAAGCAATTGAGCATTTAACTCGGGCAATAACGTTGAACCCG 618
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 TCTGAAGGAAACTTTGATGAAGCAATTGAGCATTTAACTCAGGCAATAACGTTGAACCCG 593
Query 619 ACTTCAGCTATTATGTATGGAAACAGAGCTAGTGTCTACATTAAGTTGAAGAAGCCAAAC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ACTTCAGCTATTATGTATGGAAACAGAGCTAGTGTCTACATTAAGTTGAAGAAGCCAAAC 653
Query 679 GCTGCTATTCGAGATGCAAACGCAGCATTGGAGATTAACCCTGATTCTGCCAAGGGATAC 738
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCTGCTATTCGTGATGCAAATGCAGCATTGGAGATTAACCCTGATTCTGCCAAGGGATAC 713
Query 739 AAGTCACGAGGTATGGCTCGTGCCATGCTTGGAGAATGGGCAGAGGCTGCAAAAGACCTT 798
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 714 AAGTCACGGGGTATGGCTCGTGCCATGCTTGGAGAATGGGCAGAGGCTGCGAAAGACCTT 773
Query 799 CACCTTGCATCTACGATAGACTATGATGAGGAAATTAGTGCTGTTCTCAAAAAGGTTGAA 858
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 774 CACCTTGCATCTACAATAGACTATGATGAGGAAATTAGCGCTGTTCTCAAAAAGGTTGAA 833
Query 859 CCTAATGCACATAAGCTTGAGGAGCACCGTAGAAAGTATGACAGATTACGTAAGGAAAGA 918
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 CCTAATGCACATAAGCTTGAGGAGCACCGTAGGAAGTATGACAGATTACGTAAGGAAAGA 893
Query 919 GAGGACAAAAAGGCTGAACGGGATAGATTACGTCGCCGTGCTGAAGCACAGGCTGCCTAT 978
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 894 GAGGACAAAAAGGCTGAACGTGATAGACTACGTCGCCGTGCTGAAGCACAGGCTGCCTAT 953
Query 979 GATAAAGCTAAGAAAGAAGAACAGTCATCATCTAGCAGACCATCAGGAGGCGGTTTCCCA 1038
||||||||||||||||||||||||||||| ||||||||| | | | | ||
Sbjct 954 GATAAAGCTAAGAAAGAAGAACAGTCATCGTCTAGCAGA-C--C---A-------T--CA 998
Query 1039 GGAGGTATGCCCGGTGGTTTCCCAGGAGGTATGCCCGGTGGATTCCCAGGAGGAATGGGA 1098
||| | | | ||||||||||||||||||||||| |||||||| | |||
Sbjct 999 GGA-G---G--C---GGTTTCCCAGGAGGTATGCCCGGCGGATTCCC--------T-GGA 1040
Query 1099 GGCATGCCCGGCGGATTCCCGGGAGGAATGGGTGGTATGGGCGGTATGCCCGGTGGATTC 1158
|| ||||| ||||||||||| ||| | || |||||||||||||| |||||||||
Sbjct 1041 GGAATGCCTGGCGGATTCCC---AGG-A-----GGAATGGGCGGTATGCCAGGTGGATTC 1091
Query 1159 CCAGGAGGAATGGGCGG--T----GGT--A-TGCCTGCAGGAATGGGCGGTGGTATG-CC 1208
||||||||||||||||| | ||| | | || | |||||||||||||||||| ||
Sbjct 1092 CCAGGAGGAATGGGCGGTATGCCCGGTGGATTCCCAGGGGGAATGGGCGGTGGTATGCCC 1151
Query 1209 -C-GGAATGGGCGGTGGTATGCCTGCTGGAatgggtggtggcggtatgccaggtgcaggc 1266
| |||||||| ||||||||||| | |||||||| ||| |||||||||||||||
Sbjct 1152 GCAGGAATGGGTGGTGGTATGCC--C-GGAATGGGCGGT---GGTATGCCAGGTGCA--- 1202
Query 1267 ggtggtatgcctggtggtggcggtatgcctggtggtatggACTTCAGCAAAATATTGAAT 1326
| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ----G---G-C-GGTGGTGGCGGTATGCCTGGTGGTATGGACTTCAGCAAAATATTGAAT 1253
Query 1327 GATCCTGAGCTAATGACGGCATTTAGCGACCCTGAAGTCATGGCTGCTCTTCAAGATGTG 1386
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1254 GATCCTGAGCTAATGACGGCATTTAGCGACCCAGAAGTTATGGCTGCTCTTCAAGATGTG 1313
Query 1387 ATGAAGAACCCTGCGAATCTAGCGAAGCATCAGGCGAATCCGAAGGTGGCTCCCGTGATT 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1314 ATGAAGAACCCTGCGAATCTAGCGAAGCATCAGGCGAATCCGAAGGTGGCTCCGGTGATT 1373
Query 1447 GCAAAGATGATGGGCAAATTTGCAGGACCTCAGTAAACAAAACAAGAAGCTTGCTT-TTC 1505
||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||
Sbjct 1374 GCAAAGATGATGGGCAAATTTGCAGGACCTCAGTAAACAAAACAACAAGTTTTCTTCTTC 1433
Query 1506 T-TT-GCCAATTTCTGTGTTTAATTGCGTGAGATAAGAGATATGTTGGAGAACTTTTGTT 1563
| || |||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1434 TCTTTGCCAATTTCTGTGTTTAACTGCGTGAGATAAGAGATATGTTGGAGA--TTTTCTT 1491
Query 1564 TT-CTTTTATGTTGTCGTTGCAGAGGAACTTTAACAGGAACAAAACTCTTTTCTCTTCGT 1622
|| |||||||||| |||||| |||||||||| | ||||||||||||||
Sbjct 1492 TTTCTTTTATGTTTTCGTTGGAGAGGAACTT---C-----------TCTTTTCTCTTCGT 1537
Query 1623 TAGTAATCTACCCTCTT-CTCGTTTTTCACTTCCTGAGT 1660
||||||| |||||| || ||||| ||||||||| ||||
Sbjct 1538 TAGTAATTTACCCTTTTTCTCGTGCTTCACTTCCCGAGT 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64562965275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5