BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22680.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492601 jgi|Araly1|492601|fgenesh2_kg.7__2034__AT4G22680.1 1386 0.0
> Ahg492601 jgi|Araly1|492601|fgenesh2_kg.7__2034__AT4G22680.1
Length=1258
Score = 1386 bits (750), Expect = 0.0
Identities = 906/978 (93%), Gaps = 23/978 (2%)
Strand=Plus/Plus
Query 1 GACATAACTTGCAAGCTGTTGAGATTTTCCATCCTCGATAACTTTA-TTCTTCCATATCT 59
|||||||||||||||| ||||||||||||||||||| ||||||||| || |||| ||||
Sbjct 1 GACATAACTTGCAAGCAGTTGAGATTTTCCATCCTCAATAACTTTAGTT-TTCC--ATCT 57
Query 60 CTTCCATTTCGCTCTCTATTTCACATCCCCATATAACATAATATACAATCACACATATCA 119
| | | | | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 C-T-C-TAT-ACTCTTTATTTCACATCCCCATATAACATAATATACAATCACACATATCA 113
Query 120 TTTCTATATAGTATTTAATGGGGAGACAGCCATGCTGTGACAAGCTAGGGGTGAAGAAAG 179
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 114 ----T-T-TAGTATTTAATGGGGAGGCAGCCATGCTGTGACAAGCTAGGGGTGAAGAAAG 167
Query 180 GGCCGTGGACGGTGGAGGAAGATAAGAAGCTTATAAACTTCATACTAACCAATGGCCATT 239
|||||||||||| ||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 168 GGCCGTGGACGGCGGAGGAAGACAAGAAGCTCATAAACTTCATACTCACCAACGGCCATT 227
Query 240 GTTGCTGGCGTGCTTTGCCGAAGCTGGCCGGTCTCCGTCGCTGTGGAAAGAGCTGCCGCC 299
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 228 GTTGCTGGCGTGCTTTGCCGAAGCTGGCCGGTCTCCGCCGTTGTGGAAAGAGCTGCCGCC 287
Query 300 TCCGGTGGACTAACTATCTCCGGCCTGACTT-AAAACGAGGCCTTCTCTCGCATGATGAA 358
||||||||||||||||||||||||||||||| || | |||||||||| || |||||||||
Sbjct 288 TCCGGTGGACTAACTATCTCCGGCCTGACTTGAAGA-GAGGCCTTCTTTCTCATGATGAA 346
Query 359 GAACAACTTGTCATAGATCTTCATGCTAATCTCGGCAATAAGTGGTCTAAGATAGCTTCA 418
||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 347 GAACAACTTGTAATTGATCTTCATGCGCATCTCGGAAATAAGTGGTCTAAGATAGCTTCA 406
Query 419 AGATTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGATTACCTGGAAGAACAGATAACGAAATAAAAAACCATTGGAATACTCATATCAAGAAA 466
Query 479 AAACTTCTTAAGATGGGAATCGATCCTATGACCCATCAACCCCTAA-ATCAAGAACCTTC 537
||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||
Sbjct 467 AAACTTCTTAAGATGGGAATCGACCCTATGACCCATCAACCTCTACCA-CAAGAACATTC 525
Query 538 TAATATCGATAATTCCAAAACCATTCCGTCCAATCCAGACGATG-TCT--CAGTGGAACC 594
|||||| | |||||||||||||||| |||| |||||||| || | | | ||||||||||
Sbjct 526 TAATATAGGTAATTCCAAAACCATTTCGTCGAATCCAGAAGACGCTATATCAGTGGAACC 585
Query 595 AAAGACAACTAACACGAAATACGTGGAGATAAGTGTCACGACAACAGAAGAAGAAAGTAG 654
||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 586 AAAGACAACAAACACCAAAGACGTGGAGATAAGTGGCACGACAACAGAAGAAGAAAGTAG 645
Query 655 TAGCACGGTTACTGATCAAAACAGTTCGATGGATAATGAAAATCATCTAATTGACAACAT 714
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 646 TAGCACGGTTACTGATCAAAACAGTTCGATGGATAGTGAAAATCATCTAATTGACAACAT 705
Query 715 TTATGATGATGATGAATTGTTTAGTTACTTATGGTCCGACGAAACTACTAAAGATGAGGC 774
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 706 TTATAATGATGATGAATTGTTTAGTTACTTATGGTCCGACGAAACTACTAAAGCTGAGGC 765
Query 775 CTCTTGGAGTGATAGTAACTTTGGTGTTGGTGGAACATTATATGACCACAATATCTCCGG 834
||| |||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||
Sbjct 766 CTCGTGGAGTGATAGTAACTTTGGCGTTGGTGGAACATTATATGACAATAATATTTCCGG 825
Query 835 CGCCGATGCAGATTTTCCGATATGGTCACCGGAAAGAATCAATGACGAGAAGATGTTTTT 894
|| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 826 CGGCGATGCAGATTATCCGATATGGTCACCGGAAAGAATCAACGACGAGAAGATGTTTTT 885
Query 895 GGATTATTGTCAAGACTTTGGTGTTCATGATTTTGGGTTTTGACTGTTCACCATTGA-CA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 886 GGATTATTGTCAAGACTTTGGTGTTCATGATTTTGGGTTTTGACTGTTCACCATT-ATCA 944
Query 954 TATTGGCAACTCTATGGA 971
||||||||||||| ||||
Sbjct 945 TATTGGCAACTCTCTGGA 962
Score = 292 bits (158), Expect = 4e-78
Identities = 197/215 (92%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 1019 acatatatatatatatgtacattatatgtaa-acatatacacgcatacAAATCATAAAC- 1076
||||||| |||||| |||||||||||| ||| | |||||||| ||||||||||||||||
Sbjct 962 ACATATACATATATGTGTACATTATATATAACATATATACACACATACAAATCATAAACA 1021
Query 1077 -AT-GTA-AGGATAATAAATCCATGTAAAGCAGTAAGGGTGCACCATGGTTTTCAAGTAT 1133
|| ||| | ||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1022 TATAGTAGAAGATAATACATCCATGTAAAGCAGTAAGTGTGCACCATGGTTTTCAAGTAT 1081
Query 1134 TATTAATTAGGGTTTGGTAGGATTTCGTCAAAGTCAAGAATACAGATTGAAGTTTACTTT 1193
||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1082 TATTAATTAGGGTTTGGTAGGGTTTCGTCAAAGTCAAGAATACATATT-AAGTTTACTTT 1140
Query 1194 CTTTGTTTTGTATAAATTATTCACATATTCACAAA 1228
|||||||||||||||||||||||||| || |||||
Sbjct 1141 CTTTGTTTTGTATAAATTATTCACATGTTAACAAA 1175
Score = 119 bits (64), Expect = 6e-26
Identities = 77/83 (93%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 1263 TATGTTTCAGTATTAGGGTCCAACTTTACGTTTAAACAAAACT-TAAAAAATTGAGACAC 1321
||||||||| |||||||||||||| ||| |||||||||||||| | |||| |||||||||
Sbjct 1176 TATGTTTCAATATTAGGGTCCAACGTTATGTTTAAACAAAACTCTTAAAATTTGAGACAC 1235
Query 1322 TAGTTCTCTCCTGCATATCTTTG 1344
|||||||||||||||||||||||
Sbjct 1236 TAGTTCTCTCCTGCATATCTTTG 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5