BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22690.1
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354499 jgi|Araly1|354499|fgenesh1_pg.C_scaffold_7001672 2488 0.0
> Ahg354499 jgi|Araly1|354499|fgenesh1_pg.C_scaffold_7001672
Length=1575
Score = 2488 bits (1347), Expect = 0.0
Identities = 1501/1577 (95%), Gaps = 4/1577 (0%)
Strand=Plus/Plus
Query 588 ATGGAAACGGCGTCTTCTAATTTCTCTCTCTCGCAGATCCTCAATATTGAGGAACCCTAC 647
|||||||||| ||| ||||| ||||||||||||||||||||||| | |||||||| |||
Sbjct 1 ATGGAAACGGTGTCGTCTAACTTCTCTCTCTCGCAGATCCTCAACACAGAGGAACCGTAC 60
Query 648 AGCTCCGTAATGCTCGGTGTCGCCGCTCTCTTGGCCGTTGTTTGCTATTTCTGGATACAG 707
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCCGTGATGCTCGGTGTCGCCGCTCTCTTGGCCGTTGTTTGCTATTTCTGGATACAG 120
Query 708 GGGAAGTCCAAATCCAAGAACGGACCACCGTTGCCTCCGGGACCTTGGCCACTTCCGATC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGAAGTCCAAATCCAAGAACGGACCACCGTTGCCTCCGGGACCTTGGCCACTTCCGATC 180
Query 768 GTCGGCAACCTCCCGTTCCTAAACTCTGACG-TCCTCCACACGCAATTCCAAGCCCTAAC 826
|| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 181 GTTGGAAACCTCCCGTTCCTAAACTCTGA-GATCCTCCACACGCAATTCCAAGCCCTAAC 239
Query 827 CCTAAAACATGGCCCTCTCATGAAGATCCACCTCGGTTCCAAACTTGCGATCGTCGTCTC 886
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CCTAAAACATGGCCCTCTCATGAAGATCCACCTCGGTTCCAAACTCGCGATCGTCGTCTC 299
Query 887 TTCCCCTGACATGGCTCGCGAGGTTCTCAAAACCCACGACATCACTTTCGCCAACCACGA 946
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCCCCGGATATGGCTCGCGAGGTTCTCAAAACCCACGACATCACTTTCGCCAACCACGA 359
Query 947 TCT-CCCTGAAGTCGGAAAGATCAACACTTACGGTGGTGAAGACATCCTCTGGTCTCCTT 1005
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 TCTTCCC-GAAGTCGGAAAGATCAACACTTACGGTGGAGAAGACATCCTCTGGTCTCCTT 418
Query 1006 ACGGTACCCATTGGAGGAGACTTCGTAAGCTCTGCGTCATGAAGATGTTCACTACCCCAA 1065
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 419 ACGGCACCCATTGGAGGAGACTCCGTAAGCTCTGCGTCATGAAGATGTTCACTACACCAA 478
Query 1066 CTCTCGAAGCTTCCTACTCCACTCGCCGGGAAGAAACCCGACAAACCATTGTCCACATGT 1125
| || |||||||| |||||||||||||| ||||||||| |||||||| | ||| ||||||
Sbjct 479 CACTTGAAGCTTCTTACTCCACTCGCCGCGAAGAAACCAGACAAACCGTGGTCTACATGT 538
Query 1126 CGGAAATGGCTCGTGAAGGATCACCAGTCAACCTCGGAGAGCAAATATTTCTTTCCATTT 1185
| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 CTGAAATGGCTCGTGAGGGATCACCAGTCAACCTCGGAGAGCAAATCTTTCTTTCCATTT 598
Query 1186 TCAACGTCGTGACAAGAATGATGTGGGGCGCCACTGTTGAAGGAGACGAGAGAACGAGCT 1245
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 599 TCAACGTCGTGACAAGAATGATGTGGGGCGCGACTGTTGAAGGAGACGAGAGAACAATCT 658
Query 1246 TAGGAAACGAGCTCAAAACCCTAATATCTGATATCTCCGACATAGAAGGGATTCAAAACT 1305
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 659 TAGGAAACGAGCTCAAAACCCTAATCTCCGATATCTCCGACATCGAAGGGATTCAAAACT 718
Query 1306 ACTCAGATTTCTTTCCGTTGTTCTCAAGATTCGATTTCCAAGGATTGGTTAAGCAGATGA 1365
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 ACTCAGATTTCTTCCCGTTGTTCTCAAGATTCGATTTCCAGGGATTGGTTAAGCAGATGA 778
Query 1366 AAGGCCATGTGAAGAAGCTTGATCTCTTGTTCGATAGAGTTATGGAGAGTCACGTCAAAA 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 779 AAGGCCATGTGAAGAAGCTTGATCTCTTGTTCGATAGAGTTATGGAGAGTCATGTCAAGA 838
Query 1426 TGGTGGgaaagaagagcgaagaagaagaagaTTTCTTGCAATACTTACTTAGAGTTAAAG 1485
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 839 TGGTGGGTAAGAAGAGCGAAGAAGAAGAAGATTTCTTACAATACTTGCTTAGAGTTAAAG 898
Query 1486 ATGATGATGAGAAAGCTCCTCTGTCCATGACTCATGTCAAGTCTCTCCTCATGGATATGG 1545
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACGATGATGAGAAAGCTCCTCTGTCCATGACTCATGTCAAGTCTCTCCTCATGGATATGG 958
Query 1546 TTCTTGGTGGTGTCGACACATCGGTTAACGCATCCGAATTCGCCATGGCAGAGATTGTGA 1605
|||| |||||||| || ||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 959 TTCTCGGTGGTGTGGATACATCGGTTAACGCATCAGAATTCGCCATGGCTGAGATCGTAA 1018
Query 1606 GCAGACCGGAAGTGTTAAACAAGATCCGACTAGAACTTGACCAAGTTGTTGGCAAAGACA 1665
|||||||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||
Sbjct 1019 GCAGACCGGAAGTGTTAAACAAGATCAGACAAGAACTGGACCAAGTTGTTGGGAAAGACA 1078
Query 1666 ACATCGTTGAGGAATCACATTTACCTAAGCTTCCTTACCTACAAGCGGTTATGAAAGAGA 1725
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 ACATCGTTGAAGAATCACATTTACCTAAGCTTCCTTATCTACAAGCGGTTATGAAAGAGA 1138
Query 1726 CTCTTAGGCTTCACCCTACGCTTCCTCTTCTTGTTCCTCACAGAAACAGCGAAACCTCGG 1785
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 CTCTTAGACTTCACCCTACCCTTCCTCTTCTTGTGCCTCACAGAAACAGCGAAACCTCGG 1198
Query 1786 TGGTTGCGGGATACACTGTGCCTAAAGACTCCAAGATTTTCATCAACGTTTGGGCGATTC 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGTTGCGGGATACACTGTGCCTAAAGACTCCAAGATTTTCATCAACGTTTGGGCGATTC 1258
Query 1846 ATAGAGATCCTAAGAATTGGGATGAACCAAACGAGTTCAAACCTGAGAGGTTTTTGGAGA 1905
|||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1259 ATAGAGATCCTAAGCATTGGGATGAACCAAACGAGTTTAAACCAGAGAGGTTTTTGGAGA 1318
Query 1906 ATTCGCTTGATTTCAATGGAGGTGATTTTAAGTACTTGCCTTTTGGGTCAGGAAGGAGGA 1965
| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1319 ACTCGCTTGATTTCAATGGAGGTGATTTCAAGTACTTGCCATTTGGATCAGGAAGGAGGA 1378
Query 1966 TTTGTGCGGCGATTAACATGGCTGAGAGACTTGTTCTGTTCAACATTGCTTCACTTCTTC 2025
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 TTTGTGCGGCTATTAACATGGCTGAGAGGCTTGTTCTGTTCAACATTGCTTCACTTCTTC 1438
Query 2026 ACTCTTTTGATTGGAAAGCACCTCAAGGACAGAAGTTTGAGGTTGAAGAGAAGTTTGGTC 2085
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 ACTCTTTTGATTGGAAAGCTCCTCAAGGACAGAAGTTTGAGGTTGAAGAGAAGTTTGGGC 1498
Query 2086 TTGTTCTTAAGTTGAAGTCTCCACTTGTGGCTATTCCTGTTCCAAGGTTGTCCGATCCAA 2145
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1499 TTGTTCTTAAGTTGAAGTCTCCACTTGTGGCTATTCCTGTTCCAAGGTTGTCTGATCCAA 1558
Query 2146 AACTCTATACAGCTTAA 2162
||||||| || ||||||
Sbjct 1559 AACTCTACACGGCTTAA 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87950375705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5