BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22700.1
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945855 jgi|Araly1|945855|scaffold_702084.1 617 2e-176
Ahg922484 jgi|Araly1|922484|scaffold_103765.1 444 4e-124
Ahg922482 jgi|Araly1|922482|scaffold_103763.1 429 1e-119
> Ahg945855 jgi|Araly1|945855|scaffold_702084.1
Length=622
Score = 617 bits (334), Expect = 2e-176
Identities = 511/595 (86%), Gaps = 17/595 (3%)
Strand=Plus/Plus
Query 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAAT 60
||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 17 AAGAATGGCTTCCAAACGTTGTGCTGTCTGCAAGATCTTGAAAGAAACTTGTGCTCCAGG 76
Query 61 GTGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATT-ATTC-AG 118
|||||| | ||||||||||||||||| ||||| | || ||| | | | || | || ||
Sbjct 77 GTGCATCTCCGCACCACATTTTCCATCGGACGATACGAGATTCGATGATGTTCA-TCAAG 135
Query 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAATTTCCAGAACAACGA 178
|||||||||||||||| || |||| ||||| |||||||||||| |||||||| ||
Sbjct 136 -TTTTTGGAGCCGTGAACGTCCGCAACATCCTCAATAATCTTGAATCCCCAGAACAGCGT 194
Query 179 GAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTCT 238
| |||||||||||||||||| |||||||| ||||| ||||||| |||| | |||||||||
Sbjct 195 GCGATTGCTGCCAACTGTTTGCGTTATGCGGCTGAAGCTCGTAGACGTGACCCTATTTCT 254
Query 239 GGTTGTCATGACATGATTC-TACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297
|||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 255 GGTTGTCATGGCATGA-TCTTACACTACAAGAATATTCTCAATAATGTTGAACAAGATAT 313
Query 298 TGAATCCGCGGTGAATGAGCTTGGAACCTATGTGGGACACGATCAAGTACCAAAATTTTA 357
| |||| || |||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 314 TAAATCTGCAATGAATGAGCTCGAAACCTATGTGGGACACGATCAAGTGCCAAAATTTTA 373
Query 358 TGATCTTCCAATGCCAGATGATTTCCTCATGACACCAGTCTCTTTAGATTCTTTTATTGC 417
|||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||
Sbjct 374 TGATCTTCCAATGCCAGATGATTTCCTCATTACACCAGGCTCTTCAGATTCCTTTATTGA 433
Query 418 AAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTGCTGC 477
|||||| |||||| ||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 434 AAAAATAAAGAGTCTAAACGATGTTCAAAAGAATCAACTTATGCAACTCCAAACAGCTGC 493
Query 478 TGATAATGCACCAATGATAATGAATAGCATATTTGGGAAGATG-GAAGATAAAAACCTGA 536
|||| |||| ||||||||||| || ||||||| |||||| | |||||| |||| ||
Sbjct 494 TGATG-TGCA--AATGATAATGAGTAACATATTTTGGAAGA-GAGAAGATCAAAAGATGG 549
Query 537 AAGATGGGCAT----A-G-AGCTGATGGTGCATCAACATCTGCTGGTAAGTGATA 585
| ||||| ||| | | ||||||||| ||||||||||||||| || |||||||
Sbjct 550 ATGATGGTCATGGTCATGGAGCTGATGGCGCATCAACATCTGCTAGTCAGTGATA 604
> Ahg922484 jgi|Araly1|922484|scaffold_103765.1
Length=621
Score = 444 bits (240), Expect = 4e-124
Identities = 483/598 (81%), Gaps = 26/598 (4%)
Strand=Plus/Plus
Query 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAAT 60
||||||| |||| | || ||||||||| ||||| || ||||| |||||||||||| |||
Sbjct 19 AAGAATGACTTCTAGCCATTGTGCTGTTTGCAAGATCTTGAAAGAAACTTGTGCT-CAAG 77
Query 61 G-TGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATTA-TTCAG 118
| ||||| | |||||| |||||||||| || ||| | |||||| ||| | | | | ||
Sbjct 78 GATGCATCTCCGCACCATATTTTCCATCGAATGATACGAGTTTCGAAGATGTCAGTAAAG 137
Query 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAAT-TTCCAGAACAACG 177
| |||||||||||||| || |||| ||||||| | ||||| ||| || ||||||||
Sbjct 138 -TCTTTGGAGCCGTGAACATTCGCAAGATCCTTGCTGATCTT-AATACCCCTGAACAACG 195
Query 178 AGAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTC 237
|||||||||||||||| || || ||||| ||||||||||||| |||| |||| |||||
Sbjct 196 TCAGATTGCTGCCAACTGCTTGCGCTATGCGGCTGAGGCTCGTAGACGTGATCCCATTTC 255
Query 238 TGGTTGTCATGACATGATTCTACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297
| ||||||||| ||| || ||||| |||||| ||||||||||||| |||||||||||||
Sbjct 256 TAGTTGTCATGGCATAATCCTACACCACAAGAGTATTCTCAATAATATTGAACAAGATAT 315
Query 298 TGAATCCGCGGTGAATGAGCTTGGAA-CCTATGTGGGACAC-GATCAAGTACCAAAATTT 355
||| || | |||||||||| ||| |||| ||||||| | |||| ||| |||||||||
Sbjct 316 TGAGTCTACAAAGAATGAGCTT-GAATCCTACGTGGGAC-CTGATCGAGTGCCAAAATTT 373
Query 356 TATGATCTTCCAATGCCAGATGATTTCCTCA-TGACACCAGTCTCTTTAGA-TTCTTTTA 413
| ||||||||| |||||||| |||||||||| | ||| ||| ||||||||| ||| ||
Sbjct 374 TTTGATCTTCCTATGCCAGAAGATTTCCTCACT-ACATCAGCCTCTTTAGATTTC-TTCG 431
Query 414 TTGCAAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTG 473
||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 432 TTGAAAAAATAAAGAGTTTAAATGCAGTTCAAAAGAATCAACTTATGCAACTCCCA---G 488
Query 474 CTGCTGATAATGCACCAATGATAATGAATAGCATATTTGGGAAGATGGAAGATAAAAACC 533
|||||||| ||| |||||||||| ||| |||||| ||||| ||||||| ||||
Sbjct 489 CTGCTGATGC-GCA--AATGATAATGGATAAAATATTTTGGAAGGGGGAAGATCAAAAGA 545
Query 534 TGAAAGATGGGCATAG------AGCTGATGGTGCATCAACATCTGCTGGTAAGTGATA 585
| | ||||| ||| | ||||||||| ||||||||||| |||||| |||||||
Sbjct 546 AGGATGATGGTCATGGTCCCGGAGCTGATGGCGCATCAACATCGGCTGGTCAGTGATA 603
> Ahg922482 jgi|Araly1|922482|scaffold_103763.1
Length=622
Score = 429 bits (232), Expect = 1e-119
Identities = 485/603 (80%), Gaps = 33/603 (5%)
Strand=Plus/Plus
Query 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAA- 59
||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||
Sbjct 17 AAGAATGGCTTCCAACCGTTGTGCTGTTTGCAAGATCTTGAATGAAACTTGTGCT-CAAG 75
Query 60 TGTGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATTATTCAGA 119
|||||| | ||||||||||||||||| |||||| ||||||| ||| | | | || ||
Sbjct 76 GGTGCATCTCGGCACCACATTTTCCATCGAACGATACAAGTTTTGAAGATGTCAGTC-GA 134
Query 120 -TTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAA-TTTCCAGAACAACG 177
| ||||||||| |||| || |||| ||||| | | ||||| || || ||||||||
Sbjct 135 GTCTTTGGAGCCATGAACGTCCGCAAGATCCTCGTTGATCTT-AACACCCCTGAACAACG 193
Query 178 AGAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTC 237
|||||||||||||||| || || |||| |||||||||||| |||| | || |||||
Sbjct 194 TCAGATTGCTGCCAACTGCTTGCGCTATGAAGCTGAGGCTCGTCGACGTGACCCCATTTC 253
Query 238 TGGTTGTCATGACATGATTCTACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297
||||| |||| |||||| ||||| |||||| ||||||||||||| |||||||||| ||
Sbjct 254 CGGTTGCCATGGCATGATCCTACACCACAAGAGTATTCTCAATAATATTGAACAAGAGAT 313
Query 298 TGAATCCGCGGTGAATGAGCTTGGAA-CCTATGTGGGA-CACGATC-AAGTACCAAAATT 354
||| || | |||||||||| ||| |||| |||||| | ||||| || | ||||||||
Sbjct 314 TGAGTCTACAAAGAATGAGCTT-GAACCCTACGTGGGATC-CGATCGAA-TGCCAAAATT 370
Query 355 TTATGATCTTCCAATGCCAGATGATTTCCTCA-TGACACCAGTCTCTTTAGATTCTTTTA 413
|| ||||||||| |||||||| |||||||||| | ||| ||| ||||||||||| ||||
Sbjct 371 TTTTGATCTTCCTATGCCAGAAGATTTCCTCACT-ACATCAGCCTCTTTAGATTTTTTTG 429
Query 414 TTGCAAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTG 473
||| |||||| |||||| |||| | ||||||||||||||||||||||||||||||||| |
Sbjct 430 TTGAAAAAATAAAGAGTCTAAATGCAGTTCAAAAGAATCAACTTATGCAACTCCCAACAG 489
Query 474 CTGCTGATAATGCACCAATGATAATGAATAGCATATTTGGGAA-GATGGAAGAT-A-AA- 529
||| || |||| |||||||||| || |||||| |||| | ||||||| | ||
Sbjct 490 CTG---AT---GCACAAATGATAATGGGTAAAATATTTTGGAATGG-GGAAGATCATAAG 542
Query 530 AACC-TGAAAGATGGGCATAG-----A-GCTGATGGTGCATCAACATCTGCTGGTAAGTG 582
|| ||| ||||| ||| | | |||||||| ||||||||||||||| || ||||
Sbjct 543 AAGGATGAG-GATGGTCATGGTCCCGAAGCTGATGGCGCATCAACATCTGCTTGTCAGTG 601
Query 583 ATA 585
|||
Sbjct 602 ATA 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21596063374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5