BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22700.1 Length=590 Score E Sequences producing significant alignments: (Bits) Value Ahg945855 jgi|Araly1|945855|scaffold_702084.1 617 2e-176 Ahg922484 jgi|Araly1|922484|scaffold_103765.1 444 4e-124 Ahg922482 jgi|Araly1|922482|scaffold_103763.1 429 1e-119 > Ahg945855 jgi|Araly1|945855|scaffold_702084.1 Length=622 Score = 617 bits (334), Expect = 2e-176 Identities = 511/595 (86%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAAT 60 ||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||| Sbjct 17 AAGAATGGCTTCCAAACGTTGTGCTGTCTGCAAGATCTTGAAAGAAACTTGTGCTCCAGG 76 Query 61 GTGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATT-ATTC-AG 118 |||||| | ||||||||||||||||| ||||| | || ||| | | | || | || || Sbjct 77 GTGCATCTCCGCACCACATTTTCCATCGGACGATACGAGATTCGATGATGTTCA-TCAAG 135 Query 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAATTTCCAGAACAACGA 178 |||||||||||||||| || |||| ||||| |||||||||||| |||||||| || Sbjct 136 -TTTTTGGAGCCGTGAACGTCCGCAACATCCTCAATAATCTTGAATCCCCAGAACAGCGT 194 Query 179 GAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTCT 238 | |||||||||||||||||| |||||||| ||||| ||||||| |||| | ||||||||| Sbjct 195 GCGATTGCTGCCAACTGTTTGCGTTATGCGGCTGAAGCTCGTAGACGTGACCCTATTTCT 254 Query 239 GGTTGTCATGACATGATTC-TACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297 |||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 255 GGTTGTCATGGCATGA-TCTTACACTACAAGAATATTCTCAATAATGTTGAACAAGATAT 313 Query 298 TGAATCCGCGGTGAATGAGCTTGGAACCTATGTGGGACACGATCAAGTACCAAAATTTTA 357 | |||| || |||||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 314 TAAATCTGCAATGAATGAGCTCGAAACCTATGTGGGACACGATCAAGTGCCAAAATTTTA 373 Query 358 TGATCTTCCAATGCCAGATGATTTCCTCATGACACCAGTCTCTTTAGATTCTTTTATTGC 417 |||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||| Sbjct 374 TGATCTTCCAATGCCAGATGATTTCCTCATTACACCAGGCTCTTCAGATTCCTTTATTGA 433 Query 418 AAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTGCTGC 477 |||||| |||||| ||||||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 434 AAAAATAAAGAGTCTAAACGATGTTCAAAAGAATCAACTTATGCAACTCCAAACAGCTGC 493 Query 478 TGATAATGCACCAATGATAATGAATAGCATATTTGGGAAGATG-GAAGATAAAAACCTGA 536 |||| |||| ||||||||||| || ||||||| |||||| | |||||| |||| || Sbjct 494 TGATG-TGCA--AATGATAATGAGTAACATATTTTGGAAGA-GAGAAGATCAAAAGATGG 549 Query 537 AAGATGGGCAT----A-G-AGCTGATGGTGCATCAACATCTGCTGGTAAGTGATA 585 | ||||| ||| | | ||||||||| ||||||||||||||| || ||||||| Sbjct 550 ATGATGGTCATGGTCATGGAGCTGATGGCGCATCAACATCTGCTAGTCAGTGATA 604 > Ahg922484 jgi|Araly1|922484|scaffold_103765.1 Length=621 Score = 444 bits (240), Expect = 4e-124 Identities = 483/598 (81%), Gaps = 26/598 (4%) Strand=Plus/Plus Query 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAAT 60 ||||||| |||| | || ||||||||| ||||| || ||||| |||||||||||| ||| Sbjct 19 AAGAATGACTTCTAGCCATTGTGCTGTTTGCAAGATCTTGAAAGAAACTTGTGCT-CAAG 77 Query 61 G-TGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATTA-TTCAG 118 | ||||| | |||||| |||||||||| || ||| | |||||| ||| | | | | || Sbjct 78 GATGCATCTCCGCACCATATTTTCCATCGAATGATACGAGTTTCGAAGATGTCAGTAAAG 137 Query 119 ATTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAAT-TTCCAGAACAACG 177 | |||||||||||||| || |||| ||||||| | ||||| ||| || |||||||| Sbjct 138 -TCTTTGGAGCCGTGAACATTCGCAAGATCCTTGCTGATCTT-AATACCCCTGAACAACG 195 Query 178 AGAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTC 237 |||||||||||||||| || || ||||| ||||||||||||| |||| |||| ||||| Sbjct 196 TCAGATTGCTGCCAACTGCTTGCGCTATGCGGCTGAGGCTCGTAGACGTGATCCCATTTC 255 Query 238 TGGTTGTCATGACATGATTCTACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297 | ||||||||| ||| || ||||| |||||| ||||||||||||| ||||||||||||| Sbjct 256 TAGTTGTCATGGCATAATCCTACACCACAAGAGTATTCTCAATAATATTGAACAAGATAT 315 Query 298 TGAATCCGCGGTGAATGAGCTTGGAA-CCTATGTGGGACAC-GATCAAGTACCAAAATTT 355 ||| || | |||||||||| ||| |||| ||||||| | |||| ||| ||||||||| Sbjct 316 TGAGTCTACAAAGAATGAGCTT-GAATCCTACGTGGGAC-CTGATCGAGTGCCAAAATTT 373 Query 356 TATGATCTTCCAATGCCAGATGATTTCCTCA-TGACACCAGTCTCTTTAGA-TTCTTTTA 413 | ||||||||| |||||||| |||||||||| | ||| ||| ||||||||| ||| || Sbjct 374 TTTGATCTTCCTATGCCAGAAGATTTCCTCACT-ACATCAGCCTCTTTAGATTTC-TTCG 431 Query 414 TTGCAAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTG 473 ||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 432 TTGAAAAAATAAAGAGTTTAAATGCAGTTCAAAAGAATCAACTTATGCAACTCCCA---G 488 Query 474 CTGCTGATAATGCACCAATGATAATGAATAGCATATTTGGGAAGATGGAAGATAAAAACC 533 |||||||| ||| |||||||||| ||| |||||| ||||| ||||||| |||| Sbjct 489 CTGCTGATGC-GCA--AATGATAATGGATAAAATATTTTGGAAGGGGGAAGATCAAAAGA 545 Query 534 TGAAAGATGGGCATAG------AGCTGATGGTGCATCAACATCTGCTGGTAAGTGATA 585 | | ||||| ||| | ||||||||| ||||||||||| |||||| ||||||| Sbjct 546 AGGATGATGGTCATGGTCCCGGAGCTGATGGCGCATCAACATCGGCTGGTCAGTGATA 603 > Ahg922482 jgi|Araly1|922482|scaffold_103763.1 Length=622 Score = 429 bits (232), Expect = 1e-119 Identities = 485/603 (80%), Gaps = 33/603 (5%) Strand=Plus/Plus Query 1 AAGAATGGCTTCCAACCGTTGTGCTGTCTGCAAAATTTTGAATGAAACTTGTGCTCCAA- 59 ||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||| Sbjct 17 AAGAATGGCTTCCAACCGTTGTGCTGTTTGCAAGATCTTGAATGAAACTTGTGCT-CAAG 75 Query 60 TGTGCATTTATGCACCACATTTTCCATCAAACGATGCAAGTTTCAAAGTTATTATTCAGA 119 |||||| | ||||||||||||||||| |||||| ||||||| ||| | | | || || Sbjct 76 GGTGCATCTCGGCACCACATTTTCCATCGAACGATACAAGTTTTGAAGATGTCAGTC-GA 134 Query 120 -TTTTTGGAGCCGTGAATGTTTGCAATATCCTTGATAATCTTGAA-TTTCCAGAACAACG 177 | ||||||||| |||| || |||| ||||| | | ||||| || || |||||||| Sbjct 135 GTCTTTGGAGCCATGAACGTCCGCAAGATCCTCGTTGATCTT-AACACCCCTGAACAACG 193 Query 178 AGAGATTGCTGCCAACTGTTTACGTTATGCTGCTGAGGCTCGTATACGTAATCCTATTTC 237 |||||||||||||||| || || |||| |||||||||||| |||| | || ||||| Sbjct 194 TCAGATTGCTGCCAACTGCTTGCGCTATGAAGCTGAGGCTCGTCGACGTGACCCCATTTC 253 Query 238 TGGTTGTCATGACATGATTCTACAATACAAGAATATTCTCAATAATGTTGAACAAGATAT 297 ||||| |||| |||||| ||||| |||||| ||||||||||||| |||||||||| || Sbjct 254 CGGTTGCCATGGCATGATCCTACACCACAAGAGTATTCTCAATAATATTGAACAAGAGAT 313 Query 298 TGAATCCGCGGTGAATGAGCTTGGAA-CCTATGTGGGA-CACGATC-AAGTACCAAAATT 354 ||| || | |||||||||| ||| |||| |||||| | ||||| || | |||||||| Sbjct 314 TGAGTCTACAAAGAATGAGCTT-GAACCCTACGTGGGATC-CGATCGAA-TGCCAAAATT 370 Query 355 TTATGATCTTCCAATGCCAGATGATTTCCTCA-TGACACCAGTCTCTTTAGATTCTTTTA 413 || ||||||||| |||||||| |||||||||| | ||| ||| ||||||||||| |||| Sbjct 371 TTTTGATCTTCCTATGCCAGAAGATTTCCTCACT-ACATCAGCCTCTTTAGATTTTTTTG 429 Query 414 TTGCAAAAATTAAGAGTTTAAACGAAGTTCAAAAGAATCAACTTATGCAACTCCCAACTG 473 ||| |||||| |||||| |||| | ||||||||||||||||||||||||||||||||| | Sbjct 430 TTGAAAAAATAAAGAGTCTAAATGCAGTTCAAAAGAATCAACTTATGCAACTCCCAACAG 489 Query 474 CTGCTGATAATGCACCAATGATAATGAATAGCATATTTGGGAA-GATGGAAGAT-A-AA- 529 ||| || |||| |||||||||| || |||||| |||| | ||||||| | || Sbjct 490 CTG---AT---GCACAAATGATAATGGGTAAAATATTTTGGAATGG-GGAAGATCATAAG 542 Query 530 AACC-TGAAAGATGGGCATAG-----A-GCTGATGGTGCATCAACATCTGCTGGTAAGTG 582 || ||| ||||| ||| | | |||||||| ||||||||||||||| || |||| Sbjct 543 AAGGATGAG-GATGGTCATGGTCCCGAAGCTGATGGCGCATCAACATCTGCTTGTCAGTG 601 Query 583 ATA 585 ||| Sbjct 602 ATA 604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21596063374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5