BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22720.1
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945854 jgi|Araly1|945854|scaffold_702083.1 1731 0.0
> Ahg945854 jgi|Araly1|945854|scaffold_702083.1
Length=1105
Score = 1731 bits (937), Expect = 0.0
Identities = 1049/1105 (95%), Gaps = 0/1105 (0%)
Strand=Plus/Plus
Query 206 GTTTCTGTTTTTAAATCAAAGAAATGAAGAAGAAGATGATAGCCATTGGTTTCGAAGGAT 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTTTCTGTTTTTAAATCAAAGAAATGAAGAAGAAGATGATAGCCATTGGTTTCGAAGGTT 60
Query 266 CAGCTAACAAGATTGGAGTTGGAATTGTGACTTTAGACGGTACTATCTTAGCAAATCCTC 325
|||||||||||||||| ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 61 CAGCTAACAAGATTGGGGTTGGAATTGTTACATTAGACGGTACAATCTTAGCGAATCCTC 120
Query 326 GGCATACGTATATAACACCACCTGGTCATGGTTTTCTTCCTAGAGAGACTGCACATCACC 385
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GGCATACTTATATAACACCGCCTGGTCACGGTTTTCTTCCTAGAGAGACTGCACATCACC 180
Query 386 ATCTTGACCATGTTCTTCCTTTAGTCAAATCAGCTTTAGAGACTTCTCAAGTTACTCCTG 445
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ATCTTGACCATGTTCTTCCTTTAGTCAAATCAGCTTTAGAGACTTCTGAAGTTACTCCTG 240
Query 446 AAGAAATCGACTGTATTTGTTATACGAAAGGTCCCGGGATGGGAGCGCCGTTGCAGGTTT 505
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 241 AAGAAATCGACTGCATTTGTTACACGAAAGGTCCTGGGATGGGAGCGCCGTTGCAGGTTT 300
Query 506 CAGCCATTGTTGTTAGAGTATTGTCACAGCTTTGGAAAAAGCCAATTGTTGCTGTGAATC 565
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 301 CAGCTATTGTTGTTAGAGTATTGTCGCAGCTTTGGAAAAAGCCGATTGTTGCTGTGAATC 360
Query 566 ATTGTGTGGCTCACATTGAGATGGGGAGAGTAGTTACTGGAGCTGATGATCCTGTTGTGT 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 ATTGTGTGGCTCACATTGAGATGGGGAGAGTAGTTACTGGAGCTGATGATCCTGTTGTAT 420
Query 626 TGTATGTGAGTGGTGGTAACACTCAGGTGATTGCTTATAGTGAAGGTAGGTACCGGATTT 685
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 TGTATGTGAGTGGTGGGAATACTCAGGTGATTGCTTATAGTGAAGGTAGATACCGGATTT 480
Query 686 TTGGTGAGACTATTGATATTGCTGTTGGTAATTGTTTGGATCGGTTTGCTAGAGTCTTGA 745
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGGTGAGACTATTGATATTGCTGTTGGTAATTGTTTGGATCGGTTTGCTAGAGTCTTGA 540
Query 746 AGCTTTCTAATGATCCAAGCCCTGGTTATAACATTGAACAGCTTGCTAAGAAAGGAGAAA 805
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 541 AGCTTTCTAATGATCCAAGCCCTGGTTATAACATCGAACAGCTTGCCAAGAAAGGAGAAA 600
Query 806 ACTTTATTGATCTTCCGTATGCTGTTAAAGGTATGGATGTATCGTTCAGCGGAATCTTGA 865
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 601 ACTTTATTGATCTTCCGTATGCTGTTAAAGGTATGGATGTATCTTTCAGTGGAATCTTGA 660
Query 866 GTTATATCGAAACTACTGCAGAGGAGAAGCTCAAGAATAACGAGTGTACACCAGCAGACT 925
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTATATCGAAACTACCGCGGAGGAGAAGCTCAAGAATAACGAGTGTACACCAGCAGACT 720
Query 926 TGTGTTATTCCCTTCAAGAGACGGTGTTTGCGATGTTGGTTGAGATCACAGAAAGAGCGA 985
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 721 TGTGTTATTCCCTTCAAGAGACGGTGTTTGCAATGTTGGTTGAGATCACGGAAAGAGCGA 780
Query 986 TGGCGCATTGTGACAAGAAAGACGTTTTGATAGTTGGCGGTGTTGGGTGTAACGAGCGTT 1045
|||| |||||||||||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct 781 TGGCACATTGTGACAAGAAAGACGTTTTGATAGTTGGGGGTGTCGGTTGTAATGAGCGTT 840
Query 1046 TGCAGGAAATGATGAGGACTATGTGCTCAGAACGTGATGGTAAGCTGTTTGCAACAGATG 1105
||||||| |||||||||||||||||||| ||||||||||||||| ||||||| || ||||
Sbjct 841 TGCAGGACATGATGAGGACTATGTGCTCTGAACGTGATGGTAAGTTGTTTGCGACGGATG 900
Query 1106 ACCGTTACTGCATCGATAATGGAGCTATGATCGCTTACACAGGTCTACTCGCGTTTGTTA 1165
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 901 ACCGTTACTGCATCGATAATGGAGCGATGATCGCCTACACAGGTCTACTCGCATTTGTTA 960
Query 1166 ATGGTATTGAAACACCGATCGAAGACTCTACCTTTACACAACGATTTCGCACAGACGAGG 1225
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 961 ATGGTATTGAAACGCCGATCGAAGACTCTACCTTTACACAGCGATTTCGAACAGACGAGG 1020
Query 1226 TTCATGCGGTGTGGCGAGAGAAAGAAGCTGTACTACTTGGGGATAAGAAAGTTGCAGCGA 1285
|||||||||| |||||||||||||||||| | |||||||||||||||| ||||| | |
Sbjct 1021 TTCATGCGGTATGGCGAGAGAAAGAAGCTTTGGTACTTGGGGATAAGAACGTTGCTGTTA 1080
Query 1286 ATTGAGTCTGTCCCCATTTTTGTTC 1310
||||| | ||| |||||||||||||
Sbjct 1081 ATTGATTATGTGCCCATTTTTGTTC 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5