BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22730.1
Length=2509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492596 jgi|Araly1|492596|fgenesh2_kg.7__2029__AT4G22730.1 3565 0.0
> Ahg492596 jgi|Araly1|492596|fgenesh2_kg.7__2029__AT4G22730.1
Length=2474
Score = 3565 bits (1930), Expect = 0.0
Identities = 2309/2486 (93%), Gaps = 49/2486 (2%)
Strand=Plus/Plus
Query 1 ATTCACGAGAGTGGAAGGTTACAGTTTTCCAAATCCGAG-AAACAGACACAAAATTGGTC 59
||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||| ||
Sbjct 1 ATTCACGAGAGTGGAAGATTAGAGTTTTCCAAATCCGAGTAAA-AGACACAAAA----TC 55
Query 60 CCTCTCTAAAAG--T-TA-C-TATCTTCGTTTAACAAAGAGATAGCTCCCAATCCAGTAC 114
|| | ||||| | || | | ||||||| |||||||||||||||||| ||||| | ||
Sbjct 56 TTTC-CCAAAAGTTTCTATCTTCTCTTCGTCTAACAAAGAGATAGCTCCAAATCCTGAAC 114
Query 115 AAAACAGAGTA--CTCTGCTCTATAAATTTCGTT-CCTTTATTACTCTGCTCTATAAAAC 171
||||||||||| |||||||||||||| ||| || |||||||||||||||||| ||||||
Sbjct 115 AAAACAGAGTACTCTCTGCTCTATAAACTTCATTACCTTTATTACTCTGCTCTTTAAAAC 174
Query 172 AGATTATTCTGCTCTATAAGAGAGATAGATAAATGAGCTAAAGCTCAGTAATTTCTAAAC 231
||| || |||||| | | | || ||||||||||||||||| ||||||||||||| ||
Sbjct 175 AGAGTACTCTGCT-T-T---ATAG--AGATAAATGAGCTAAAGATCAGTAATTTCTATAC 227
Query 232 AGAGAGACAAGA-AAATTCAAGAATGGTTACCTTATGTGCCACGTTACTGATCCTTCTCT 290
|||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 228 AGAGAGACAAGACCAATTCAAGAATGGTTTCCTTAAGTGCCACGTTACTTATCCTTCTCT 287
Query 291 CAATCTTTCTTGCAACTCCGTCGAATGTTCGAGGAAATGCAGAGCTGAAGGCTTTAATGG 350
|||||||| || |||||||||| ||||||||||| ||||||||||| || ||||||||||
Sbjct 288 CAATCTTTTTTTCAACTCCGTCCAATGTTCGAGGCAATGCAGAGCTAAAAGCTTTAATGG 347
Query 351 AGCTGAAATCGTCGCTTGACCCTGAAAACAAGCTTCTCCGTTCATGGACGTTTAACGGCG 410
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 348 AGCTCAAATCATCGCTTGACCCTGAAAACAAGCTTCTCCGATCATGGACGTTTAACGGAG 407
Query 411 ATCCATGCGACGGATCTTTCGAAGGAATTGCATGTAACCAGCATCTAAAAGTCGCAAACA 470
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 408 ATCCATGCGACGGATCTTTCGAAGGAATTGCCTGTAACCAGCATCTAAAAGTTGCAAACA 467
Query 471 TATCATTACAAGGGAAACGTTTGGTCGGAAAATTGTCTCCGGCGGTTGCAGAGCTCAAAT 530
|||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 468 TATCGTTACAAGGGAAACGTTTAGCCGGAAAACTGTCTCCGGCGGTTGCAGAGCTCAAAT 527
Query 531 GTTTGTCAGGTCTTTACTTACATTACAATAGTCTCTCTGGAGAGATACCTCAAGAGATCA 590
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 528 GTTTGTCAGGTCTTTACTTACATTATAATAGTCTCTCCGGAGAGATACCTCAAGAGATCA 587
Query 591 CAAATCTTACTGAATTATCAGATCTTTATCTCAATGTTAATAACTTCTCTGGTGAGATTC 650
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 588 CAAATCTTACTGAATTATCAGATCTTTATCTCAATGTTAATAACTTCTCCGGCGAGATTC 647
Query 651 CGGCAGATATCGGCTCCATGGCTGGCTTGCAAGTTATGGATCTTTGTTGCAACAGTTTAA 710
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CGGCAGATATCGGCTCTATGGCTGGCTTGCAAGTTATGGATCTTTGTTGCAACAGTTTAA 707
Query 711 CAGGGAAGATACCAAAGAACATTGGAT-CCTTGAAGAAACTTAATGTGTTGTCTCTGCAA 769
||||||||||||||||||||||||| | | ||||||||||| ||||||||||||||||||
Sbjct 708 CAGGGAAGATACCAAAGAACATTGG-TACTTTGAAGAAACTAAATGTGTTGTCTCTGCAA 766
Query 770 CACAACAAACTAACCGGAGAGGTTCCTTGGACTTTAGGAAACTTGAGTATGTTAAGCAGG 829
|||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 767 CACAACCAACTAACCGGAGAGGTTCCTTGGAGTTTAGGAAACTTAAGTATGTTAAGCAGA 826
Query 830 CTTGATTTAAGCTTCAACAATCTGTTAGGTTTAATCCCAAAAACCCTAGCCAACATTCCT 889
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATTGATTTGAGCTTCAACAATCTGTTAGGTTTAATCCCAAAAACCCTAGCCAACATTCCT 886
Query 890 CAGTTGGACACTCTTGACTTGCGCAACAATACTCTCTCTGGCTTTGTTCCTCCTGGTCTT 949
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 887 CAGTTGGATACTCTTGACTTGCGCAACAATACTCTCTCTGGCTTTGTTCCTTCTGGTCTC 946
Query 950 AAGAAGTTGAATGGGAGCTTCCAGTTTGAGAACAACACCGGGTTATGTGGTATCGATTTT 1009
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 947 AAGAAGTTGAATGGGAGCTTCCAGTTTGAGAACAATACCGGGTTATGTGGTATGGATTTT 1006
Query 1010 CCTTCTTTGAGAGCTTGTTCTGCTTTCGATAATGCGAATAATATCGAACAATTTAAGCAG 1069
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1007 CCTTCTTTGAGAGCTTGTTCTGCTTTCGATAATGCG---AACATCGAACAATTCAAGCAG 1063
Query 1070 CCTCCTGGTGAAATAGACACTGATAAATCAGCTCTTCACAACATTCCCGAGTCTGTATAT 1129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1064 CCTCCTGGTGAAATAGACACTGATAAATCAGCTCTTCACAACATTTCCGAGTCTGTATAT 1123
Query 1130 CTCCAAAAGCATTGCAACCAAACACATTGCAAGAAATCCTCATCGAAACTCCCACAAGTT 1189
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1124 CTCCAAAAGCATTGCAACAAAACACAATGCAAGAAATCCTCATCGAAACTCCCACAAGTT 1183
Query 1190 GCTTTGATTTCAAGCGTGATTACCGTCACTATAACATTGATTGGTGCTGGTATATTGACC 1249
|| ||||||||||||||||||||||| ||||||||| || ||||||| || |||||||||
Sbjct 1184 GCGTTGATTTCAAGCGTGATTACCGTGACTATAACACTGCTTGGTGCCGGCATATTGACC 1243
Query 1250 TTCTTTCGCTACAGAAGAAGGAAGCAAAAGATCAGTAACACACCTGAGTTTTCCGAGGGA 1309
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1244 TTCTTTCGCTACAGAAGACGGAAGCAAAAGATTAGTAACACGCCTGAGTTTTCCGAGGGA 1303
Query 1310 AGACTAAGCACAGATCAACAAAAAGAGTTCCGTGCATCGCCTTTAGTGAGTCTTGCCTAC 1369
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1304 AGACTCAGCACAGATCAACAAAAAGATTTCCGCGCATCGCCTTTAGTGAGTCTTGCCTAC 1363
Query 1370 ACTAAAGAATGGGATCCGCTAGGTGATAGCAGAAACGGAGCTGAGTTTTCACAAGAGCCT 1429
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1364 ACTAAAGAATGGGATCCGCTCGGCGATAGCAGAAACGGAGCTGAGTTCTCACAAGAGCCT 1423
Query 1430 CATCTCTTTGTTGTAAATAGTAGCTTCAGGTTTAACTTAGAAGACATTGAATCAGCAACC 1489
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1424 CATCTCTTTGTTGTTAATAGTAGCTTCAGGTTTAACTTAGAAGACATTGAATCAGCGACG 1483
Query 1490 CAATGCTTCTCAGAAGCTAATC-TATTGAGCAGAAACAGCTTCACCTCAGTGTTCAAAGG 1548
|||||||||||||||||||| | || | ||| |||||||||||||||| |||||||||||
Sbjct 1484 CAATGCTTCTCAGAAGCTAA-CTTACTAAGCCGAAACAGCTTCACCTCGGTGTTCAAAGG 1542
Query 1549 AGTCCTCAGAGATGGTTCTCCGGTAGCTATCAGAAGCATCAACATAAGCAGTTGCAAGAA 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 AGTCCTCAGAGATGGTTCTCCGGTAGCTATCAGAAGCATCAACATAAGCAGTTGCAAGAA 1602
Query 1609 CGAAGAAGTCGAATTCATGAACGGTTTAAAGCTTTTATCTTCGTTGTCACACGAAAACTT 1668
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1603 CGAAGAAGTCGAATTCATGAACGGTTTAAAGCTTTTATCTTCGCTGTCACATGAAAACTT 1662
Query 1669 AGTGAAGCTACGTGGATTCTGCTGTTCTAGAGGCAGAGGAGAGTGTTTCCTCATCTATGA 1728
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 AATGAAGCTACGCGGATTCTGCTGTTCTAGAGGCAGAGGAGAGTGTTTCCTCATCTATGA 1722
Query 1729 TTTTGCTTCAAAAGGAAAGCTTTCAAATTTTCTTGACT-TACAAGAACGCGAAACTAATC 1787
||||||||||||||||||||| || ||||||||||| | ||||||||| ||||| ||||
Sbjct 1723 TTTTGCTTCAAAAGGAAAGCTCTCGAATTTTCTTGA-TATACAAGAACATGAAACGAATC 1781
Query 1788 TGGTCCTTGCTTGGTCTGCAAGAATCTCCATCATCAAAGGGATTGCAAAAGGTATTGCTT 1847
||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 AGGTTCTTGATTGGCCTGCAAGAATCTCCATCATCAAAGGGATTGCAAAAGGTATTGCTT 1841
Query 1848 ACTTACATGGAAGTGATCAACAGAAGAAGCCTACAATAGTTCATCGAAACATCTCTGTCG 1907
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 ATTTACATGGAAGTGATCAACAGAAGAAGCCTACAATAGTTCATCGAAACATCTCTGTCG 1901
Query 1908 AAAAAATCCTACTTGATGAACAATTTAACCCGTTAATCGCTGATTCGGGTCTTCACAACC 1967
| ||||||||||| ||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 1902 AGAAAATCCTACTCGATGAGCAATTCAACCCTTTGATCGCTGATTCGGGTCTTCACAACC 1961
Query 1968 TTCTAGCAGACGATATGGTCTTCTCAGCACTCAAAACAAGTGCAGCAATGGGATATTTAG 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 TTCTAGCAGACGATATGGTCTTCTCAGCACTCAAAACAAGTGCAGCAATGGGATATTTAG 2021
Query 2028 CTCCGGAATACGTCACAACCGGAAAATTCACCGAGAAAACCGATATTTTCGCCTTTGGAG 2087
|||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2022 CTCCAGAATATGTCACAACCGGAAAATTCACCGAGAAAACCGACATTTTTGCCTTTGGAG 2081
Query 2088 TCATCATTCTCCAGATACTCTCTGGTAAGCTCATGCTTACAAGTTCACTGAGAAATGCAG 2147
||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||
Sbjct 2082 TCATCATTCTCCAGATACTCTCTGGCAAGCTCATGCTTACTAGCTCACTGAGAATTGCAG 2141
Query 2148 CTGAAAATGGAGAACATAACGGGTTCATCGATGAAGATCTTCGTGAAGAGTTTGATAAAC 2207
|||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||
Sbjct 2142 CTGAGAATGGAGAACATAGCGGGTTCATCGATGAATATCTTCGTGAAGAGTTCGATAAAC 2201
Query 2208 CAGAGGCGACTGCAATGGCGAGGATTGGGATAAGCTGTACACAGGAGATACCAAACAATA 2267
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2202 CAGAGGCGACTGCAATGGCGAGGATTGGAATAAGCTGTACACAGGAGATCCCAAACAATA 2261
Query 2268 GGCCTAATATAGAGACATTGCTTGAGAATATAAACTGTATGAAGAGTGAATGACTCTGCT 2327
|||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| |
Sbjct 2262 GGCCTAATATAGAGACATTGCTTGAGGATATAAACTCTATGAAGAGTGAATGAGTCTG-T 2320
Query 2328 TTTTAATTAGTA--TCT-TT--------GTGCAAGTATGATTCTCCGGTTA-GCTGTGTC 2375
||| | |||||| ||| || ||||||||||||||||||||||| || || ||
Sbjct 2321 TTTGA-TTAGTAACTCTGTTTCAACATTGTGCAAGTATGATTCTCCGGTTAAGCAGTATC 2379
Query 2376 CCACCAATTGGTTTTGTTTGTTTTAGTTCT-CTCCAGTAAGAACCGGGTCCGGTTTATAT 2434
|||||||||||||| |||||||| ||| | |||| | ||||||||| ||||||||||||
Sbjct 2380 ACACCAATTGGTTTTCTTTGTTTT-GTTTTTCTCCGGCAAGAACCGG-TCCGGTTTATAT 2437
Query 2435 TTTATTTAGATTTGTAGCTGAGAATT 2460
||||||||||||||||||||||||||
Sbjct 2438 TTTATTTAGATTTGTAGCTGAGAATT 2463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94578078335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5