BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22740.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945850 jgi|Araly1|945850|scaffold_702079.1 1515 0.0
> Ahg945850 jgi|Araly1|945850|scaffold_702079.1
Length=1115
Score = 1515 bits (820), Expect = 0.0
Identities = 1019/1114 (91%), Gaps = 18/1114 (2%)
Strand=Plus/Plus
Query 34 TTTATCAGGGAAGATGCAAGGAggtggtggtagagatccttttggtggtggttttggggg 93
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 10 TTTATCA-GGAAGATGCAAGGA---GGTGGTAGAGATCCTTTTGGTGGTGGTTTTGGTGG 65
Query 94 tccttttggtggttttggaggtggctcttttggtggttttggaag-aggttcctttggtg 152
||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||
Sbjct 66 TCCTTTTGGTGGTTTTGGAGGCGGCTCTTTTGGTCGTTTTGG-AGTCGGTTCCTTTGGTG 124
Query 153 gatttggtggCCCTAATGGTCCTCCGAGTCTCATGTCTAATTTTTTCGGAGGAAGAGATC 212
| ||||||||||||||| ||||||| | | | ||| ||||||||||||||||||||||||
Sbjct 125 GTTTTGGTGGCCCTAATCGTCCTCCAAATTTGATGGCTAATTTTTTCGGAGGAAGAGATC 184
Query 213 CATTTGACGACCCTTTCTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAATCCAACTTCT 272
| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 185 CGTTTGATGACCCTTTTTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAGTCCAACTTCT 244
Query 273 TTGGTCCCAGCATGAATCCTTTTGCAGAAATGCATCGTCTGCCACAGGGTTTTATTGAGA 332
||||||| ||||||||||||||||| ||||||| |||||| || | ||||||||||||||
Sbjct 245 TTGGTCCTAGCATGAATCCTTTTGCGGAAATGCGTCGTCTTCCCCCGGGTTTTATTGAGA 304
Query 333 ATAATCAGCCTCCAGGACCGAGTAGATCACGCGGACCGGTTATtgaagagattgattcag 392
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 305 ATAATCAGCCACCAGGACCGAGTAGATCACGCGGACCGGTTATTGAAGAGATTGAATCAG 364
Query 393 atgatgagaaagaaggagaaggtgataaagagaagaaaggaagTCTAGGGAAACATGGCA 452
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 365 ATGATGAGAAAGAAGGAGAAGGTGATAAAGAGAAGAAAGGAAGACTAGGGAAACATGGCA 424
Query 453 GGTCAAGCAGTGAGGCTGAAACTGAAGA-TGCTAGAGTGCG-A-GAGA--G-AAGAAAC- 505
||||||||||||||| |||| ||||||| | | | | | | || | | | |
Sbjct 425 GGTCAAGCAGTGAGGTTGAAGCTGAAGATTTATTTAACG-GAAGGAAATCGTTTGTTTCT 483
Query 506 -CGGCAAATGCAAAG-CATGAATGTAAATGCAGAGAGAAGGAACCGAGAAATGCAGAACA 563
|| || || | | | |||||||||||||||||||||||||| ||||||| ||||
Sbjct 484 TTGG-AACTG-ATTGTGTTTTATGTAAATGCAGAGAGAAGGAACCGACAAATGCAAAACA 541
Query 564 TGAATGTGAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCTATGG 623
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 542 TGAATGTAAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCCATGG 601
Query 624 TGAACAATGGACAGTGGCAACCTCAAACCGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 683
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 TGAACAATGGACAGTGGCAACCTCAAACTGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 661
Query 684 CATACGGTGGTCAGAACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTG 743
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 662 CATACGGTGGTCAGAACGGCAACTACTATACTTCATCGAAGACCAGAAGGACAGGAAGTG 721
Query 744 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATA 803
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 722 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAGGCAGCGCATA 781
Query 804 TGATTTCAAGAGGCCTTCATAACAAGGGCCACACAGTTGCGCGTAAACTTAACTCAGATG 863
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 782 GGATTTCAAGGGGCCTTCATAACAAGGGCCACACGGTTGCGCGTAATCTTAACTCAGATG 841
Query 864 GCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGATGAATTGGCTGGTTTTG 923
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 842 GCCGTGTTGATACAACACAGACCTTGCACAATTTAAATGAAGATGAATTGGCCACCTTTG 901
Query 924 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCAT 983
||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 902 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAGATGCAATTACCCGGTCGGTCTGGTTCAT 961
Query 984 TTGGAAGTGGTCTTGTGAACAGAGAGCAACCAATGTTACTTCCCTCGACTGATCCAAGTC 1043
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 962 TTGGAAGTGGTCTTGTAAACAGAGAGCAACCAATGTTGCTTCCCTCGACTGATCCAAGTC 1021
Query 1044 CTTCTCATGCACGAGCAGAATCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1103
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 CTTCTCATGCCCGAGCAGAGTCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1081
Query 1104 ATGGTACAAACTAATCTCCGCCTATATGTATGGT 1137
|||||| ||||||||||| | | | |||||||||
Sbjct 1082 ATGGTAGAAACTAATCTCTGACGACATGTATGGT 1115
Score = 128 bits (69), Expect = 1e-28
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 489 TGCGAGAGAGAAGAAACCGGCAAATGCAAAGCATGAATGTAAATGCAGAGAGAAGGAACC 548
||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 510 TGC-AGAGAGAAGGAACCGACAAATGCAAAACATGAATGTAAATGCAGAGAGAAGGAACC 568
Query 549 GAGAAATGCAGAACATGAATGTGAATGC 576
| |||||||||||||||||||||||||
Sbjct 569 CACAAATGCAGAACATGAATGTGAATGC 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5