BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22740.1 Length=1318 Score E Sequences producing significant alignments: (Bits) Value Ahg945850 jgi|Araly1|945850|scaffold_702079.1 1515 0.0 > Ahg945850 jgi|Araly1|945850|scaffold_702079.1 Length=1115 Score = 1515 bits (820), Expect = 0.0 Identities = 1019/1114 (91%), Gaps = 18/1114 (2%) Strand=Plus/Plus Query 34 TTTATCAGGGAAGATGCAAGGAggtggtggtagagatccttttggtggtggttttggggg 93 ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 10 TTTATCA-GGAAGATGCAAGGA---GGTGGTAGAGATCCTTTTGGTGGTGGTTTTGGTGG 65 Query 94 tccttttggtggttttggaggtggctcttttggtggttttggaag-aggttcctttggtg 152 ||||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||| Sbjct 66 TCCTTTTGGTGGTTTTGGAGGCGGCTCTTTTGGTCGTTTTGG-AGTCGGTTCCTTTGGTG 124 Query 153 gatttggtggCCCTAATGGTCCTCCGAGTCTCATGTCTAATTTTTTCGGAGGAAGAGATC 212 | ||||||||||||||| ||||||| | | | ||| |||||||||||||||||||||||| Sbjct 125 GTTTTGGTGGCCCTAATCGTCCTCCAAATTTGATGGCTAATTTTTTCGGAGGAAGAGATC 184 Query 213 CATTTGACGACCCTTTCTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAATCCAACTTCT 272 | ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 185 CGTTTGATGACCCTTTTTTCACTCAGCCTTTTGGTGGTGGCATGTTTCAGTCCAACTTCT 244 Query 273 TTGGTCCCAGCATGAATCCTTTTGCAGAAATGCATCGTCTGCCACAGGGTTTTATTGAGA 332 ||||||| ||||||||||||||||| ||||||| |||||| || | |||||||||||||| Sbjct 245 TTGGTCCTAGCATGAATCCTTTTGCGGAAATGCGTCGTCTTCCCCCGGGTTTTATTGAGA 304 Query 333 ATAATCAGCCTCCAGGACCGAGTAGATCACGCGGACCGGTTATtgaagagattgattcag 392 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 305 ATAATCAGCCACCAGGACCGAGTAGATCACGCGGACCGGTTATTGAAGAGATTGAATCAG 364 Query 393 atgatgagaaagaaggagaaggtgataaagagaagaaaggaagTCTAGGGAAACATGGCA 452 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 365 ATGATGAGAAAGAAGGAGAAGGTGATAAAGAGAAGAAAGGAAGACTAGGGAAACATGGCA 424 Query 453 GGTCAAGCAGTGAGGCTGAAACTGAAGA-TGCTAGAGTGCG-A-GAGA--G-AAGAAAC- 505 ||||||||||||||| |||| ||||||| | | | | | | || | | | | Sbjct 425 GGTCAAGCAGTGAGGTTGAAGCTGAAGATTTATTTAACG-GAAGGAAATCGTTTGTTTCT 483 Query 506 -CGGCAAATGCAAAG-CATGAATGTAAATGCAGAGAGAAGGAACCGAGAAATGCAGAACA 563 || || || | | | |||||||||||||||||||||||||| ||||||| |||| Sbjct 484 TTGG-AACTG-ATTGTGTTTTATGTAAATGCAGAGAGAAGGAACCGACAAATGCAAAACA 541 Query 564 TGAATGTGAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCTATGG 623 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 542 TGAATGTAAATGCAGAGAGAAGGAACCCACAAATGCAGAACATGAATGTGAATGCCATGG 601 Query 624 TGAACAATGGACAGTGGCAACCTCAAACCGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 683 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 602 TGAACAATGGACAGTGGCAACCTCAAACTGGTAGTTATAGTTTTCAGAGCTCGACTGTTA 661 Query 684 CATACGGTGGTCAGAACGGCAACTACTATACTTCCTCAAAGACCAGAAGGACAGGAAGTG 743 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 662 CATACGGTGGTCAGAACGGCAACTACTATACTTCATCGAAGACCAGAAGGACAGGAAGTG 721 Query 744 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAAGCAGCGCATA 803 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 722 ATGGGTTAACTCTTGAAGAAAGCAGAGAAGCCAACACTGCAACGCGGGAGGCAGCGCATA 781 Query 804 TGATTTCAAGAGGCCTTCATAACAAGGGCCACACAGTTGCGCGTAAACTTAACTCAGATG 863 ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 782 GGATTTCAAGGGGCCTTCATAACAAGGGCCACACGGTTGCGCGTAATCTTAACTCAGATG 841 Query 864 GCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGATGAATTGGCTGGTTTTG 923 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 842 GCCGTGTTGATACAACACAGACCTTGCACAATTTAAATGAAGATGAATTGGCCACCTTTG 901 Query 924 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCAT 983 ||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||||||| Sbjct 902 AACAGTCTTGGAGTGGAAATGCTAGAAGGCAGATGCAATTACCCGGTCGGTCTGGTTCAT 961 Query 984 TTGGAAGTGGTCTTGTGAACAGAGAGCAACCAATGTTACTTCCCTCGACTGATCCAAGTC 1043 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 962 TTGGAAGTGGTCTTGTAAACAGAGAGCAACCAATGTTGCTTCCCTCGACTGATCCAAGTC 1021 Query 1044 CTTCTCATGCACGAGCAGAATCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1103 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1022 CTTCTCATGCCCGAGCAGAGTCATCCCGAAGACCGAAAGCTGCAATGAATGTAAGAGGAC 1081 Query 1104 ATGGTACAAACTAATCTCCGCCTATATGTATGGT 1137 |||||| ||||||||||| | | | ||||||||| Sbjct 1082 ATGGTAGAAACTAATCTCTGACGACATGTATGGT 1115 Score = 128 bits (69), Expect = 1e-28 Identities = 82/88 (93%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 489 TGCGAGAGAGAAGAAACCGGCAAATGCAAAGCATGAATGTAAATGCAGAGAGAAGGAACC 548 ||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 510 TGC-AGAGAGAAGGAACCGACAAATGCAAAACATGAATGTAAATGCAGAGAGAAGGAACC 568 Query 549 GAGAAATGCAGAACATGAATGTGAATGC 576 | ||||||||||||||||||||||||| Sbjct 569 CACAAATGCAGAACATGAATGTGAATGC 596 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49292931681 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5