BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G22745.1

Length=844
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945849 jgi|Araly1|945849|scaffold_702078.1                        680    0.0  


> Ahg945849 jgi|Araly1|945849|scaffold_702078.1
Length=572

 Score =  680 bits (368),  Expect = 0.0
 Identities = 463/509 (91%), Gaps = 6/509 (1%)
 Strand=Plus/Plus

Query  246  AGAAAAAAGCCGGTACTCCAGGGAGGTCGATAGATGTCTTTGCTGTGCAGTGTGAGAAGT  305
            ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |
Sbjct  67   AGAAAAAGGCCGGTACTCCAGGGAGGTCGATCGATGTCTTTGCTGTACAGTGTGAAAAAT  126

Query  306  GCATGAAGTGGAGGAAGATTGATACTCAAGATGAGTATGAAGATATCAGAAGTAGAGTAC  365
            || ||||||||||| ||||||||||||||||||| || || || |||||||||||| |||
Sbjct  127  GCCTGAAGTGGAGGCAGATTGATACTCAAGATGAATACGAGGAGATCAGAAGTAGAATAC  186

Query  366  AAGAGGACCCGtttttttGCAAGACGAAAGAAGGTGTGTCCTGTGAAGATGTTGGAGATC  425
            |||||||||||| | | ||| ||| |||||||||| | ||||||||||||| |||||| |
Sbjct  187  AAGAGGACCCGTATGTGTGCGAGAAGAAAGAAGGTATATCCTGTGAAGATGCTGGAGA-C  245

Query  426  -TAAACTATGATTCCTCCAGAACATGGGTCATCGACAAGCCTGGCTTGCCGAGGACACCA  484
             ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  246  TTAAACTATGATTCCTCCAGAACATGGGTCATCGACAAGCCTGGCTTGCCAAAGACACCA  305

Query  485  AGAGGGTTCAAAAGGAGCTTAATTCTGAGAAAGGATTACTCGAAAATGGATGCGTACTAC  544
            ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  306  AGAGGGTTCAAGAGAAGCTTAATTCTGAGAAAGGACTACTCGAAAATGGATGCGTACTAC  365

Query  545  ATAACTCCTACTGGGAAGAAGCTCAAGTCTCGTAATGAAATCGCAGCCTTCATCGATGCC  604
            |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  366  ATAACTCCCACTGGGAAGAAGCTCAAGTCTCGCAATGAAATCGCTGCCTTCATCGATGCC  425

Query  605  AATCAGGATTACAAGTATGCACTGCTTGGAGATTTCAATTTCACAGTCCCAAAGGTGATG  664
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  426  AATCAGGATTACAAGTATGCACTGCTTGGCGACTTCAATTTCACAGTCCCAAAGGTGATG  485

Query  665  GAAGAGACGGTTCCTAGTGGGATATTATCTGACAGGACCCCCAAGCCATC-AAGGAAAGT  723
            |||||||| || |||| ||| ||| |||||||||||||||||||| |||| |||| ||||
Sbjct  486  GAAGAGACTGTGCCTAATGGTATAATATCTGACAGGACCCCCAAGACATCCAAGGGAAGT  545

Query  724  TACAATTGATTGAGCTACATAGCGCTTCC  752
             ||  | |||||||||||| |||| ||||
Sbjct  546  AAC--T-GATTGAGCTACAAAGCGGTTCC  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31222669023


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5