BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22756.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329352 jgi|Araly1|329352|fgenesh1_pm.C_scaffold_7001579 1273 0.0
Ahg943115 jgi|Araly1|943115|scaffold_603659.1 839 0.0
> Ahg329352 jgi|Araly1|329352|fgenesh1_pm.C_scaffold_7001579
Length=2334
Score = 1273 bits (689), Expect = 0.0
Identities = 795/846 (94%), Gaps = 8/846 (1%)
Strand=Plus/Plus
Query 119 ATGATCCCATACGCAACAATCGAAGAAGCGTCGATCGCATTA-TCTCGAAACCTCACATG 177
|||||||| ||||| ||| ||||||| || || || || ||| | ||||||||||||
Sbjct 1 ATGATCCCTTACGCCACAGTCGAAGACGCATCCATAGCGTTAGGC-CGAAACCTCACAAC 59
Query 178 GCTAGAGACTCTCTGGTTCGATTACTCCGCCACCAAATCCGATTACTACCTCTACTGCCA 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCTCGAGACTCTCTGGTTCGATTACTCCGCCACCAAATCCGATTACTACCTCTACTGCCA 119
Query 238 CAACAttctcttcctcttcctcatcttct-ctctcgttcctctccctctcGTTTTCATCG 296
||||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||
Sbjct 120 CAACATTCTCTTCCTCTTCCTCATCTTCTCCT-TCGTCCCTCTCCCTCTCGTCTTCATCG 178
Query 297 AATCATCTCAATCCACCTCAGATTTGTTCAATCGCTACAAAATCCAACCAAAAGTGAAAA 356
|||||||| |||| |||||||||| ||||||||||||||| || ||||| || ||||| |
Sbjct 179 AATCATCTGAATCTACCTCAGATTGGTTCAATCGCTACAAGATTCAACCCAAGGTGAAGA 238
Query 357 ACTCATTCT-C-ATCGATGTTCAAATGTTACAAAGACGTCATGAAGATGTTCATCCTCGT 414
|||| |||| | || ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 239 ACTCGTTCTCCGAT--ATGTTCAAATGTTACAAAGCCGTCATGAAGATGTTCCTCCTCGT 296
Query 415 CGTTGGTCCATTACAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGAAGTGG 474
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 CGTTGGTCCATTGCAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATTCGAAGTGG 356
Query 475 ATTACCATTACCATCATGTATGGAGATTGTAGCACAGTTAGTGGTTTACTTCTTGGTAGA 534
||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 ATTGCCATTACCATCGTGTTTGGAGATTGTAGCTCAGTTAGTGGTTTACTTCTTGGTAGA 416
Query 535 GGATTATACTAATTACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAAGTT 594
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGATTATACAAATTACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAAGTT 476
Query 595 TCATCATATTCATCATGAGTATACAGCTCCTATTGGTTATGCTGCTCCTTATGCTCATTG 654
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 477 TCATCATATTCATCATGAGTATACAGCTCCTATTGGATATGCTGCTCCATATGCTCATTG 536
Query 655 GGCTGAGGTTTTGCTTCTTGGCATTCCCACGTTTCTTGGACCTGCTATTGCTCCTGGTCA 714
|||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||
Sbjct 537 GGCTGAGGTTTTGCTTCTCGGGATTCCGACGTTTCTTGGACCGGCTATTGCTCCTGGTCA 596
Query 715 TATGATTACCTTTTGGTTGTGGATTGCTTTACGACAGATTGAGGCTATCGAAACTCATAG 774
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TATGATTACGTTTTGGTTGTGGATTGCTTTACGACAGATTGAGGCTATCGAAACTCATAG 656
Query 775 CGGATATGATTTCCCATGGTCTCTGACAAAGTACATTCCATTTTATGGTGGAGCTGAGTA 834
||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 657 CGGGTATGATTTCCCATGGACTCTGACAAAATACATTCCATTTTATGGTGGAGCTGAGTA 716
Query 835 TCATGATTACCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGTTTTTAC 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 717 TCATGATTACCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGTGTTTAC 776
Query 895 TTACTGCGATTACATCTATGGAACTGATAAAGGTTACCGATTCCAGAAGAAGCTTCTTCA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTACTGCGATTACATCTATGGAACTGATAAAGGTTACCGATTCCAGAAGAAGCTTCTTCA 836
Query 955 GCAGAT 960
||||||
Sbjct 837 GCAGAT 842
Score = 499 bits (270), Expect = 2e-140
Identities = 467/562 (83%), Gaps = 14/562 (2%)
Strand=Plus/Plus
Query 371 ATGTTCAAATGTTACAAAGACGTCATGAAGATGTTCATCCTCGTCGTTGGTC-CATTACA 429
|||||| |||||| ||| | ||||||||| ||||| | |||||||| || | |||| ||
Sbjct 874 ATGTTCCGATGTTATAAACAAGTCATGAAGTTGTTCCTTCTCGTCGTCGG-CACATTGCA 932
Query 430 ACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGAAGTGGATTACCATTACCATC 489
| |||| ||||||||||| || |||||||||| ||| |||||||| || |||||||||||
Sbjct 933 AATCGTCTCTTATCCTTCCATCCAGATGATTGGGATTCGAAGTGGTTTGCCATTACCATC 992
Query 490 ATGT-ATGGAGATTGTAGCACAGTTAGTGGTTTACTTCTTGGTAGAGGATTATACTAATT 548
| | | |||||| |||||||| |||||||||||||||||| |||| ||||| ||||| |
Sbjct 993 GT-TAACGGAGATAGTAGCACAATTAGTGGTTTACTTCTTGATAGAAGATTACACTAACT 1051
Query 549 ACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAAGTTTCATC-ATATTCAT 607
||||| | ||||||| | ||||| |||||||| ||||||||| |||||| | || |||
Sbjct 1052 ACTGGATCCATAGATGGATGCATTGCAAATGGGGGTATGAGAAGATTCATCGA-ATCCAT 1110
Query 608 CATGAGTATACAGCTCCTATTGGTTATGCTG-CTCCTTATGCTCATT-GGGCTGAGGTTT 665
|| ||||| ||| |||| || || ||||| | | || ||||| |||| |||| || | |
Sbjct 1111 CACGAGTACACATCTCCGATCGGATATGC-GTCGCCGTATGCACATTGGGGC-GAAATCT 1168
Query 666 TGCTTCTTGGCA-TTCCCACGTTTCTTGGACCTGCTATTGCTCCTGGTCATATGATTACC 724
|| |||| || | |||| |||||||||||||| || || |||||||| || || || ||
Sbjct 1169 TGATTCTAGG-AGTTCCGACGTTTCTTGGACCGGCGATCGCTCCTGGACACATTATGACG 1227
Query 725 TTTTGGTTGTGGAT-TGCTTTACGACAGATTGAGGCTATCGAAACTCATAGCGGATATGA 783
|||||||| ||||| | ||||||| || || ||||| || || ||||| |||||||||||
Sbjct 1228 TTTTGGTTATGGATAT-CTTTACGCCAAATCGAGGCGATTGAGACTCACAGCGGATATGA 1286
Query 784 TTTCCCATGGTCTCTGACAAAGTACATTCCATTTTATGGTGGAGCTGAGTATCATGATTA 843
||| |||||| ||||||||| | ||||| ||||| |||||||||||||||||||| ||
Sbjct 1287 TTTTCCATGGAGTCTGACAAAATTTATTCCTTTTTACGGTGGAGCTGAGTATCATGACTA 1346
Query 844 CCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGTTTTTACTTACTGCGA 903
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1347 CCATCACTACGTTGGAGGACAAAGCCAAAGCAACTTTGCTTCAGTTTTCACTTACTGCGA 1406
Query 904 TTACATCTATGGAACTGATAAA 925
|||||| ||||||||||| |||
Sbjct 1407 TTACATTTATGGAACTGACAAA 1428
> Ahg943115 jgi|Araly1|943115|scaffold_603659.1
Length=939
Score = 839 bits (454), Expect = 0.0
Identities = 742/881 (84%), Gaps = 20/881 (2%)
Strand=Plus/Plus
Query 119 ATGATCCCATACGCAACAATCGAAGAAGCGTCGATCGCATTATCTCGAAACCTCACATGG 178
||||| || ||||| |||||||||||||| || |||||| | |||||||||||| ||
Sbjct 21 ATGATTCCTTACGCCACAATCGAAGAAGCTTCAATCGCACTCGGACGAAACCTCACACGG 80
Query 179 CTAGAGACTCTCTGGTTCGATTACTCCGCCACCAAA-TCCGATTACTACCTCTACTGCCA 237
|| || ||||| ||||||||||||||||||| |||| ||||||||||| |||||||| ||
Sbjct 81 CTCGAAACTCTGTGGTTCGATTACTCCGCCA-CAAAGTCCGATTACTATCTCTACTGTCA 139
Query 238 CAACAttctcttcctcttcctcatcttctctctcgttcctctccctctcGTTTTCATCGA 297
||||||| | ||| | |||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 140 CAACATTTTGTTCTTGTTCCTCGTCTTCTCTCTCGTTCCTCTCCCTCTTGTTTTCGTCGA 199
Query 298 ATCATCTCAATCCACCTCAGATTTGTTCAATCGCTACAAAATCCAACCAAAAGTGAAAAA 357
|| ||| ||| | || | || ||| ||||| || || |||||||| || || || |
Sbjct 200 ATTGGCTCGATCTGCTTCTGGTTGGTTTAATCGGTATAAGATCCAACCTAAGGTTAATTA 259
Query 358 CTCATTCTCATC-G--ATGTTCAAATGTTACAAAGACGTCATGAAGATGTTCATCCTCGT 414
||| || | ||| | |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 260 CTC-TT-T-ATCTGATATGTTCAAATGTTACAAAGACGTCATGACCATGTTTATCCTCGT 316
Query 415 CGTTGGTCCATTACAACTCGTTTCTTATCCTTCGATTCAGATGATTGAGATACGAAGTGG 474
||||||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 317 CGTTGGTCCGTTGCAACTCGTTTCTTATCCTTCCATTCAGATGATTGAGATTCGATCTGG 376
Query 475 ATTACCATTACCATCATGTATG-GAGAT--TGTAGCACAGTTAGTGGTTTACTTCTTGGT 531
||||||||||||| || || ||||| ||| |||||||||| || ||||||||| |
Sbjct 377 ATTACCATTACCAACAA-TAACAGAGATACTGT--CACAGTTAGTAGTCTACTTCTTGAT 433
Query 532 AGAGGATTATACTAATTACTGGGTTCATAGATTCTTTCATTGTAAATGGGGTTATGAGAA 591
||| || || ||||| |||||||| ||||||||||||||| ||||||||||||| || ||
Sbjct 434 AGAAGACTACACTAACTACTGGGTCCATAGATTCTTTCATAGTAAATGGGGTTACGACAA 493
Query 592 GTTTCATC-ATATTCATCATGAGTATACAGCTCCTATTGGTTATGCTGCTCCTTATGCTC 650
| |||||| | ||||||| |||||||||||||| || || ||||||||||| ||||| |
Sbjct 494 GATTCATCGAG-TTCATCACGAGTATACAGCTCCGATAGGATATGCTGCTCCATATGCAC 552
Query 651 ATTGGGCTGAGGTTTTGCTTCTTGGCATTCCCA-CGTTTCTTGGACCTGCTATTGCTCCT 709
|||||||||| ||||||||||| || || |||| ||||| | ||||| ||||||||||||
Sbjct 553 ATTGGGCTGAAGTTTTGCTTCTCGGAAT-CCCAACGTTTATGGGACCAGCTATTGCTCCT 611
Query 710 GGTCATATGATTACCTTTTGGTTGTGGATTGCTTTACGACAGATTGAGGCTATCGAAACT 769
||||| ||||| ||||||||||||||||| |||||| | || || |||||||| || |||
Sbjct 612 GGTCACATGATAACCTTTTGGTTGTGGATAGCTTTAAGGCAAATGGAGGCTATTGAGACT 671
Query 770 CATAGCGGATATGATTTCCCATGGTCTCTGACAAAGTACATTCCATTT-TATGGTGGAGC 828
|| || ||||||||||| |||||| || ||||| ||||| || ||| || ||||| ||
Sbjct 672 CACAGTGGATATGATTTTCCATGGAGTCCAACAAAATACATCCC-TTTCTACGGTGGCGC 730
Query 829 TGAGTATCATGATTACCATCACTACGTTGGAGGACAAAGCCAGAGTAACTTTGCTTCAGT 888
|||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 731 TGAGTACCACGATTATCATCACTACGTTGGAGGACAAAGCCAAAGCAACTTCGCTTCGGT 790
Query 889 TTTTACTTACTGCGATTACATCTATGGAACTGATAAAGGTTACCGATTCCAGAAGAAGCT 948
|| |||||||| |||||||| ||||||||||| || |||||||||||||| ||||||||
Sbjct 791 GTTCACTTACTGTGATTACATTTATGGAACTGACAAGGGTTACCGATTCCAAAAGAAGCT 850
Query 949 TCTTCAGCAGATGAAGGAGAAGTCCAAGAAGAGCAACAAGC 989
|||| ||||||| |||||| ||| ||||||||||||||||
Sbjct 851 TCTTGAGCAGATCAAGGAGTCGTCTAAGAAGAGCAACAAGC 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5