BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22760.1
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329351 jgi|Araly1|329351|fgenesh1_pm.C_scaffold_7001578 2457 0.0
> Ahg329351 jgi|Araly1|329351|fgenesh1_pm.C_scaffold_7001578
Length=2559
Score = 2457 bits (1330), Expect = 0.0
Identities = 1588/1710 (93%), Gaps = 27/1710 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGATTCTAAGCTGAGATTCTTCCTTCAAAGATGTGTAGTGCTTGAACAGGCGAAG 60
||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 775 ATGTTGGATTCTAGGCTGAGATTCTTCCTTGAAAGATGTGTAGTGATTCAACAGGCGAAG 834
Query 61 CAAGTTCATGCACAGTTAGTAGTGAACCGCTATAACCATCTTGAACCCATCTTGGTTCAC 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 CAAGTTCATGCACAGTTAGTAGTGAACCGTTATAACCATCTTGAACCCATCTTGGTTCAC 894
Query 121 CAAACTCTTCACTTCACTAAAGAGTTCTCTAGGAATATTGT-AACCTATGTTAAAAGAAT 179
|||||||||||||||||||||||||||||||| ||| |||| || |||||| ||||||||
Sbjct 895 CAAACTCTTCACTTCACTAAAGAGTTCTCTAGAAATGTTGTCAA-CTATGTCAAAAGAAT 953
Query 180 CCTCAAGGGGTTT-A-A--T-----GGTCAT-GATTCTTTCTCCTGGGGGTGT-TTAGTT 228
|||| | |||||| | | | ||| || ||||||||||| ||||| ||| || |||
Sbjct 954 CCTCCACGGGTTTAAGAGTTCCAAAGGT-ATGGATTCTTTCTCTTGGGGATGTCTT-GTT 1011
Query 229 CGGTTCTTAAGCCAGCATAGGAAGTTTAAAGAAACGGTTGACGTGTATATTGATATGCAT 288
|||||||| || |||||||||||||||||||||||||||| ||| || || || ||||||
Sbjct 1012 CGGTTCTTGAGTCAGCATAGGAAGTTTAAAGAAACGGTTGGCGTCTACATCGAAATGCAT 1071
Query 289 AACTCTGGGATTCCTCCAAGTTCACATGCTGTAACCTCAGTGTTAAGAGCCTGTGGTAAA 348
| |||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1072 TATTCTGGGATTCCTCCTAGTTCACATGCTATAACCTCAGTGTTGAGAGCTTGTGGTAAG 1131
Query 349 ATGGAGAATATGGTTGATGGTAAACCGATTCATGCTCAGGCTCTGAAAAATGGATTGTGT 408
|||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1132 ATGGAGGATATGGTTGATGGCAAACCGATTCATGCTCAGGCTCTTAAAAATGGATTGTGT 1191
Query 409 GGTTGTGTTTATGTTCAGACAGGTCTGGTGGGTTTGTATTCTAGACTT-GGTTACATTGA 467
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 1192 GGTTGTGTTTATGTTCAGACAGGTCTGGTGGGTTTGTACTCTAGA-TTCGGTTACATTGA 1250
Query 468 GCTGGCAAAGAAGGCGTTTGATGATATTGCTGAGAAGAACACAGTTTCGTGGAACTCGCT 527
| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1251 GATGGCAAAGAAGGTATTTGATGATATTGCAGAGAAGAACACAGTTTCGTGGAACTCGCT 1310
Query 528 ATTACACGGGTATCTGGAAAGCGGGGAA-CTAGATGAGGCTCGCAGAGTCTTTGACAAGA 586
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1311 TTTACACGGGTATCTGGAAAG-TGGGAATCTAGATGAAGCTCGCAGAGTCTTTGACAAGA 1369
Query 587 TCCCTGAGAAAGATGCTGTGTCATGGAATCTGATTATCTCGAGCTATGCaaaaaaaGGTG 646
| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TTCCAGAGAAAGATGTTGTGTCATGGAATCTGATTATCTCGAGCTATGCAAAAAAAGGTG 1429
Query 647 ACATGGGCAATGCATGCTCTTTGTTTTCAG-CAATGCCTTTGAAAAGTC-CGGCTTCTTG 704
||||| ||||||||||||||||| |||| | | |||||||||||||| | | ||| ||||
Sbjct 1430 ACATGAGCAATGCATGCTCTTTG-TTTCTGACGATGCCTTTGAAAAG-CTCTGCTACTTG 1487
Query 705 GAATATATTGATAGGCGGGTATGTGAATTGCAGGGAAATGAAACTAGCAAGAACCTACTT 764
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1488 GAATATTTTGATTGGCGGGTATGTGAATTGCAGGGAAATGAAACTAGCAAGAACCTATTT 1547
Query 765 CGATGCAATGCCCCAGAAGAATGGTGTCTCTTGGATTACAATGATTTCAGGGTACACAAA 824
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1548 CGATACAATGCCCCAGAAGAATAGTGTCTCTTGGATTACAATGATTTCAGGGTACACAAA 1607
Query 825 ATTGGGAGATGTTCAGTCTGCTGAGGAGCTCTTTAGACTGATGTCTAAGAAAGACAAACT 884
|||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 1608 ATTGGGAGATGTTCAGTCTGCTGAAAAGCTCTTCAGACAGATGTCTAAGAAAGACAAACT 1667
Query 885 CGTCTATGATGCCATGATAGCTTGTTATACTCAAAACGGCAAGCCAAAGGATGCTCTGAA 944
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1668 CGTCTATGATGCCATGATTGCTTGTTATGCTCAAAACGGCAAGCCAAAGGATGCTCTGAA 1727
Query 945 GCTATTCGCTCAGATGCTTGAAAGGAATTCATATATTCAGCCGGATGAGATCACACTCTC 1004
||||||| |||||||||||||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 1728 GCTATTCTCTCAGATGCTTGAAAGTAATTTAGATATTCAACCGGATGAGATCACACTCTC 1787
Query 1005 AAGTGTTGTATCAGCTAATTCACAGTTGGGTAATACCAGTTTTGGTACATGGGTTGAGTC 1064
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1788 AAGTGTTGTATCAGCTAGTTCACAGTTGGGTGATACCAGTTTTGGTACATGGGTTGAGTC 1847
Query 1065 ATATATAACCGAACATGGAATCAAGATCGATGATCTCTTAAGTACCTCTCTAATTGATCT 1124
||| |||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 1848 ATACATAACCGAACGTGGAATCATGATCGATGATCTTTTAAGTACCTCTCTAATCGATCT 1907
Query 1125 TTACATGAAAGGCGGAGACTTTGCCAAGGCATTCAAAATGTTCAGCAATCTAAACAAAAA 1184
||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||
Sbjct 1908 TTACATGAAAGGCGGAGACTTTGCCAAGGCATTCAAATTGTTCAACGATCTAATCAAAAA 1967
Query 1185 GGACACAGTTTCTTACTCTGCTATGATCATGGGCTGCGGGATAAACGGCATGGCCACAGA 1244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1968 GGACACAGTTTCTTACTCTGCTATGATCATGGGCTGTGGGATAAACGGCATGGCCACAGA 2027
Query 1245 AGCAAACAGTTTGTTTACAGCTATGATTGAAAAGAAGATCCCTCCAAATGTAGTAACATT 1304
||||||| ||||||||| || ||||| ||||||||||||||||||||| ||||||||||
Sbjct 2028 AGCAAACCGTTTGTTTAGAGAGATGATCGAAAAGAAGATCCCTCCAAATCTAGTAACATT 2087
Query 1305 CACAGGACTATTATCAGCGTATAGCCATTCAGGTCTTGTTCAAGAAGGCTACAAATGCTT 1364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 CACTGGACTATTATCAGCGTATAGCCATTCAGGTCTTGTTCAAGAAGGCTACAAATGCTT 2147
Query 1365 TAACTCCATGAAAGACCACAACTTGGAACCCTCCGCTGATCATTATGGGATAATGGTGGA 1424
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2148 TAACTCCATGAAAGACCACAACCTAGAACCCTCCGCTGATCATTATGGGATAATGGTGGA 2207
Query 1425 TATGTTGGGACGAGCCGGGAGGCTAGAAGAAGCATATGAGCTGATCAAGAGTATGCCGAT 1484
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 2208 TATGTTGGGACGAGCCGGGAGGCTAGTGGAGGCATATGAACTGATCAAGAGTATGCCGAT 2267
Query 1485 GCAGCCAAATGCTGGAGTTTGGGGAGCTTTGCTTTTAGCCAGTGGGTTACACAACAACGT 1544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2268 GCAGCCAAATGCTGGAGTTTGGGGAGCGTTGCTTTTAGCCAGTGGGTTACACAACAACGT 2327
Query 1545 TGAATTTGGAGAGATTGCGTGCAGTCACTGCGTTAAACTCGAGACAGATCCTACAGGTTA 1604
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 2328 TGAATTTGGAGAGATTGCGTGCAGTCACTGCGTTAAACTGGAGACCGATCCTACGGGTTA 2387
Query 1605 TCTTTCGCATCTTGCTA-TGATATAT-TCGTCTGTTGGTAGATGGGACGATGCCAGGACT 1662
||||||||||||||||| | |||||| | |||||||||||||||||||||||| |||| |
Sbjct 2388 TCTTTCGCATCTTGCTAAT-ATATATAT-GTCTGTTGGTAGATGGGACGATGCAAGGAAT 2445
Query 1663 GTTAGAGACAGTATAAAAGAGAAGAAACTG 1692
|||||||| ||||| ||||||||||||||
Sbjct 2446 GTTAGAGATAGTATGGAAGAGAAGAAACTG 2475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65172409195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5