BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22770.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945842 jgi|Araly1|945842|scaffold_702071.1 1557 0.0
> Ahg945842 jgi|Araly1|945842|scaffold_702071.1
Length=1039
Score = 1557 bits (843), Expect = 0.0
Identities = 975/1038 (94%), Gaps = 12/1038 (1%)
Strand=Plus/Plus
Query 233 AATCG-TAATAGGTATGGAGACTACCGGAGAAGTTGTTAAAACAACCACCGGGAGCGACG 291
||||| ||| || ||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 8 AATCGCTAA-AGATATGGAGTCTACCGGCGAAGTTGTTAAAACAACCACCGGGAGCGACG 66
Query 292 GAGGCGTTACGGTGGTGAGATCCAACGCGCCGTCAGACTTCCACATGGCTCCGAGGTCAG 351
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GTGGCGTTACCGTGGTGAGATCCAACGCGCCGTCAGACTTCCACATGGCTCCGAGGTCAG 126
Query 352 AAACTTCAAACACACCTCCCAACTCCGTCGCTCCTCCTCCTCCTCCACCGCCGCAAAACT 411
||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 127 AAACTTCAAACCCACCTCCCACCTCCGTCGCTCCTCCTCCTCCTCCACCGTCGCAAAACT 186
Query 412 CCTTTACTCCGTCGGCGGCTATGGATGGTTTCTCAAGCGGACCGATAAAGAAGAGACGTG 471
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 187 CCTTTACTCCGCCGGCGGCGATGGATGGTTTCTCAAGCGGACCGATAAAGAAGAGGCGTG 246
Query 472 GGCGCCCTAGGAAGTACGGACACGACGGAGCAGCGGTGACGCTATCTCCGAATCCGATAT 531
| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 247 GACGCCCTAGGAAGTACAGACACGACGGAGCAGCGGTGACGCTTTCACCGAATCCGATAT 306
Query 532 CATCAGCCGCACCAACGACTTCTCACGTCATCGATTTCTCGACGACATCGGAGAAACGTG 591
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 307 CAACAGCCGCACCAACGACTTCTCACGTCATCGATTTCTCGACGACAGCGGAGAAACGTG 366
Query 592 GCAAAATGAAACCAGCAACTCCAACTCCAAGCTCATTCATCAGGCCAAAGTACCAGGTCG 651
||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 367 GCAAAATGAAACCAG------CAACTCCAAGCTCCTTCATCAGACCAAAGTACCAGGTCG 420
Query 652 AGAATTTAGGTGAATGGTCTCCTTCCTCTGCCGCCGCTAATTTCACGCCGCATATTATTA 711
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 AGAATTTAGGTGAATGGGCTCCTTCCTCTGCTGCCGCTAATTTCACGCCGCATATTATTA 480
Query 712 CGGTGAATGCAGGCGAGGACGTTACGAAGAGGATAATATCATTTTCTCAACAAGGGTCTC 771
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGTCAACGCAGGCGAGGACGTAACGAAGAGGATAATATCATTTTCTCAACAAGGGTCTC 540
Query 772 TAGCTATTTGCGTTTTATGCGCAAACGGTGTCGTTTCGAGCGTTACACTTCGTCAGCCTG 831
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 541 TAGCTATTTGCGTTTTATGCGCAAACGGTGTCGTTTCTAGTGTTACACTTCGTCAGCCTC 600
Query 832 ATTCATCTGGTGGTACATTGACCTATGAGGGTCGGTTTGAGATATTGTCACTATCTGGAA 891
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 601 ATTCATCTGGTGGTACATTGACCTATGAGGGTCGGTTTGAGATATTGTCACTGTCCGGAA 660
Query 892 CATTCATGCCTAGTGACTCAGACGGGACACGAAGCAGAACAGGCGGGATGAGCGTGTCGC 951
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 661 CATTCATGCCTAGTGACTCGGATGGAACACGAAGCAGAACAGGCGGGATGAGCGTGTCA- 719
Query 952 TTG-CTAGCCCTGATGGACGTGTAGTAGGTGGTGGTGTTGCTGGCTTGCTGGTTGCAGCC 1010
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGGCTAGCCCTGATGGACGTGTAGTAGGTGGTGGTGTTGCTGGCTTGCTGGTTGCAGCT 779
Query 1011 ACTCCTATTCAAGTGGTTGTAGGAACTTTCTTAGGTGGAACAAACCAGCAAGAACAGACA 1070
||||||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||| |
Sbjct 780 ACTCCTATTCAGGTGGTTGTAGGAAGTTTCTTAGCTGGAACAAACCAACAAGATCAGAGA 839
Query 1071 CCGAAGCCGCATAACCACAACTTCATGTCTTCTCCATTAATGCCAACTTCTTCGAATGTA 1130
||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 840 CCGAAGCAGCAGAACCACAATTTCATTTCTTCTCCATTAATGCCAACTTCTTCGAATGTA 899
Query 1131 GCTGATCATCGAACCATCCGTCCCATGACATCTAGTCTCCCGATCAGTACATGGACACCG 1190
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 900 GCTGATCATCGAAACATCCGTCCCATGCCATCTACTCTCCCGATCAGTACATGGACACCG 959
Query 1191 TCTTTTCCTTCTGATTCACGACACAAGCAT-TCTCATGACTTTAATATCACTTTGACGTG 1249
||||||||||||||| || ||||||||| | |||||||||||||| ||||||||||||||
Sbjct 960 TCTTTTCCTTCTGATCCAAGACACAAGC-TCTCTCATGACTTTAACATCACTTTGACGTG 1018
Query 1250 ATTTCTTCCTTGAAGAAC 1267
||||||||||| ||||||
Sbjct 1019 ATTTCTTCCTTAAAGAAC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5