BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22780.1
Length=1963
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492590 jgi|Araly1|492590|fgenesh2_kg.7__2023__AT4G22780.1 2723 0.0
> Ahg492590 jgi|Araly1|492590|fgenesh2_kg.7__2023__AT4G22780.1
Length=1878
Score = 2723 bits (1474), Expect = 0.0
Identities = 1783/1923 (93%), Gaps = 57/1923 (3%)
Strand=Plus/Plus
Query 49 AGAAGCACATGAATTGTTCTGGTTTTATGATAGCTTTCTCTTaagaagaagaagaagaaa 108
|||||||||||||||||||||||||||||| | | || | ||||||||| ||| ||
Sbjct 1 AGAAGCACATGAATTGTTCTGGTTTTATGA-A-C---ATC-T--GAAGAAGAAAAAG-AA 51
Query 109 gaTAAATTAAAAGGGTGGTTCTGAGTTTTAAGGATTATTGTTTgaaacaagaagcaagaa 168
| || ||| | | |||||||||||||||| ||||||||||||| | ||| |||
Sbjct 52 G---AA--GAAA-GAT--TTCTGAGTTTTAAGGAATATTGTTTGAAAC-A-AAG-AAG-- 98
Query 169 gaagaagaattgaagaataaaaaagaTGGAGTTATCTGATTGCTCTAATGAATATGAGAA 228
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 CAAGAAGAA--GAAGAATAAAAAAGATGGAGTTATCTGATTGCTCTAATGAATATGAGAA 156
Query 229 GCTCGTTGTTCGGATGAACATGCCCAGGGTCGTAATTGACAATGGAGTTTGCCCTAATTC 288
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 157 GCTTGTTGTACGGATGAACATGCCCAGGGTCGTAATTGACAATGGAGTTTGCCCTAATAC 216
Query 289 AACTGTCGTCAAGATTGATAGTGCAAGAAGCCCAGGAATATTGCTTGAATCTGTACAACT 348
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 217 AACTGTCGTCAAGATTGATAGCGCAAGAAGCCCAGGGATATTACTTGAATCTGTACAACT 276
Query 349 TCTCACTGATATGAATCTCTGGATCAAAAAAGCTTACATTTCCTCTGATGGAAAATGGAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TCTCACTGATATGAATCTCTGGATCAAAAAAGCTTACATTTCCTCTGATGGAAAATGGAA 336
Query 409 TATGGATGTTTTTCATGTGAGCGATCTTAACGGAGACAAATTAACCGACGAGAACCTAAT 468
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 337 CATGGATGTTTTTCATGTGAGCGATCTTAACGGAAACAAATTAACCGACGAGAACCTAAT 396
Query 469 CCGTTACATTGAAAAGTCTATTGAAACGTCTCATTACTGT-AAAACGGAAGGGTATACGG 527
|||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| || || |
Sbjct 397 CCGTTACATTGAAAAGTCGATTGAGACGTCTCATTACTGTAAAAAC-GAAGGCTACACCG 455
Query 528 GTTTAACCGCTCTAGAGTTAACCGGAACAGACAGAGTCGGTTTACTCTCAGAGGTTTTCG 587
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GTTTAACCGCTTTAGAGTTAACCGGAACAGACAGAGTCGGTTTACTCTCAGAGGTTTTCG 515
Query 588 CGGTTCTAGCTGATCTTGAATGTGATGTTGTTGAGGCTAAGGCATGGACGCATAACGGCA 647
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 516 CGGTTTTAGCCGATCTTGAATGTGATGTTGTTGAGGCTAAGGCATGGACGCATAACGGTA 575
Query 648 GGATTGCGTCGATGATTTATGTTAAAGACGGTAACTCCGGGACACCGATCGACGGAGATT 707
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 576 GAATTGCGTCTATGATTTATGTTAAAGACGGTAACTCCGGGACTCCGATCGACGGAGATT 635
Query 708 CCGACCGTGTCCAACGTGTAGAAGGACAACTACGAAATCTAC-TAAAGGCCGACGATGGT 766
| ||||| || ||||| |||||||| |||||||| ||||||| || | ||||| ||||||
Sbjct 636 CTGACCGGGTTCAACGGGTAGAAGGGCAACTACGTAATCTACTTACA-GCCGATGATGGT 694
Query 767 TACCAAAACGACACGAGGACATGTGTGTCTTATGGTGGCAATACACATATGGAGAGAAGG 826
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 695 TACCAAAACGACACGAGGACATGTGTTTCCTATGGTGGCAATACTCATATGGAGAGAAGG 754
Query 827 TTGCACCAAAGGATGTTTATGGACCGTGACTATGAGAAGAAGTTTGATATCGAGAAATCT 886
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 755 TTACATCAGAGGATGTTTATGGACCGTGACTATGAGAAGAAGTTTGATATCGAGAATTCT 814
Query 887 CCTATCGTTTCGGTACAAAATCTTCCGAAACGTGGTTACTCTGTTGTGAACTTGCAGTGT 946
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 815 CCGATTGTTTCGGTACAAAATCTTCCGAAACGTGGTTACTCTGTTGTGAATTTGCAGTGC 874
Query 947 AAAGATCGAATGAAGCTTTTGTTTGACGTTGTTTGCACGTTGACGGATATGGCTTACATT 1006
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 875 AAAGATCGATTGAAGCTTTTGTTTGACGTTGTTTGCACATTGACGGATATGGCTTACATT 934
Query 1007 GTGTTCCACGCCGCGATTCGAACGGTTGGAGAAACGGCGTTTTTGGAATTCTATGTTAGA 1066
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 935 GTGTTCCACGCCGCGATTCGAACGGTTGGAGAAACCGCGTTTTTGGAATTCTATGTTAGA 994
Query 1067 CATAGTGATGGACATCCGGTTAGTTCAGAACCGGAGAGACAACGTTTGATCCAATGTTTA 1126
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 995 CATAGTGATGGACATCCGGTTAGTTCGGAACCGGAGAGACAACGTTTGATCCAGTGTTTA 1054
Query 1127 CAAGCTGCAATTGAAAGAAGAACGGTTAAGGGTGTGAGATTGGAGTTATGCACAGCGGAT 1186
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1055 CAAGCCGCAATTGAAAGAAGAACGGTTAAGGGTGTGAGATTGGAGTTATGCACGGCGGAT 1114
Query 1187 AGACCGGGATTGTTAGCGGAAGTAACACGAATATTGAGGGAGAACGGTTTAAACATTGCT 1246
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1115 AGACCGGGATTGTTAGCGGAAGTAACACGAGTGTTGAGGGAGAACGGATTAAACATTGCT 1174
Query 1247 AGAGCCGAGATATCGACTAAAGATAGTATAGCGAGGAATGTGTTCTATGTGACGGATGCA 1306
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1175 AGAGCCGAGATATCGACTAAAGATGGTGTAGCGAGGAATGTGTTCTATGTGACTGATGCA 1234
Query 1307 AATGGTAACCTT-ATAGATCCCGAGATAATCAAATCGATTAGGGAGAAGATCGGTATCGA 1365
|||||||| ||| |||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 1235 AATGGTAA-CTTAATAGATCCTGAGATAATCCAATCGATTAGGGAGAAGATTGGTATCGA 1293
Query 1366 TGATCTCAGTGTTAAAGAACCGTTCCCGATTAGTTGCCGAGAAGCGGTTGAGAAGGAACA 1425
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1294 TGATCTAAGTGTTAAAGAACTGTTCCCGACTAGTTGCCGAGAAGCGGTTGAGAAGGAACA 1353
Query 1426 ACAT-ATAGAACCGCAAGATCACCAAGGACGGTATGGAGGAGGGACAGTGTTGGTGTCAC 1484
|||| | |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1354 ACATCA-AGAACCGCAAGATCACCAAGGACGCTATGGAGGAGGGACAGTATTGGTATCAC 1412
Query 1485 TTGGGAGTCTAGTGATGAGGAATCTATACCATTTGGGTTTGATCAAATCATATTTTTAAC 1544
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1413 TTGGGAGTCTAGTGATGAGAAATCTATATCAATTGGGTTTGATCAAATCATATTTTTAAC 1472
Query 1545 CGGGGT-AACTAACCGGTCCATGTAGACCAATTCAATCGTGTTTGTCAACAACCCACGCG 1603
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 C-GGGTAAACTAACCGGTCCATGTAGACCAATTCAATCGTGTTTGTCAACAACCCACGCG 1531
Query 1604 GTTGAATTGGTGTATCTGGAGCAGATAGTGAACCGGTTATGGATTTGGTTTGTGGGCAAA 1663
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 1532 GTTGAATTGGTGTATCTGGAGCAGATAGTGAACCGGTAATGGATTTGGTTTGGGGGAAAA 1591
Query 1664 TTTAATTTTATGTATATAAAATGTGGGAAGTTAGTTAAGAATTTGGTGGTCGGTCTTTCA 1723
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1592 TTTAATTA-ATGTATATAAAATGTGGAAAGTTAGTTAAGAATTTGGTGGTCGGTCTT-CA 1649
Query 1724 TGTTGGACCAATAGGTAGTAGAAGGATGTTAGGTAGAATCTTGGTAACATTTAttttttt 1783
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1650 TGTTGGACCAATAGGTAGTAGAAGGATGTTAGGTAAAATCTTGGTAACATTTATTTTTTT 1709
Query 1784 CT---CTGTACATATTTATGATATAACCTATCGTTGTTAGAAGATTAGTTTTGTCAATAG 1840
| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1710 ATTATCTGTACATATTTATGATATAACCTATGGTTGTTAGAAGATTAGTTTTGTTAATAG 1769
Query 1841 TA--AA-TCAGTGTGTTGTATGTAAAATTAAATTAAATTATGGGGTTAGTGTAACGCAAA 1897
|| || |||||||||| ||||||| ||| | ||||| ||||| |||||||
Sbjct 1770 TAGTAAATCAGTGTGTT--ATGTAAA-TTA--T--------GGGGTCAGTGTTACGCAAA 1816
Query 1898 GGAGACAAGTGGGTCCTACATGTGTGAATCTTATTGATTCGttttt-ttATTATATAATC 1956
||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1817 GGAGACAAGCGGGTCCTACTTGTGTGAATCTTATTGATTCGTTTTTGTT-TTATATAATC 1875
Query 1957 TTT 1959
|||
Sbjct 1876 TTT 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73780804565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5