BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22790.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492589 jgi|Araly1|492589|fgenesh2_kg.7__2022__AT4G22790.1 2416 0.0
> Ahg492589 jgi|Araly1|492589|fgenesh2_kg.7__2022__AT4G22790.1
Length=1682
Score = 2416 bits (1308), Expect = 0.0
Identities = 1492/1580 (94%), Gaps = 16/1580 (1%)
Strand=Plus/Plus
Query 11 ttttttGTCATCTTTATCAACAAACAAACAACTATCTCTGCAAATTTGGCTGAAACCTCT 70
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1 TTTTTTGTCATCTTCATCAACAAACAAACAACCATCTCTGCAAAATTGGCTGAAACCTCT 60
Query 71 TAAAAGTTCTTTGCTCTGTTCCAAATTA-TC-------CATATTTTCTACTAACAATAAT 122
|| ||||||||| || |||||||||||| || || |||||||||||| || |||
Sbjct 61 TAGAAGTTCTTTCCTATGTTCCAAATTATTCATATTTTCAGATTTTCTACTAATAACAAT 120
Query 123 GTCAGAAACATCAAAGTCAGAGTCTTTAGATCCAGAAG--TC----TCTGAAGGGCTTTG 176
|||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 121 GTCAGAAAAATCAAAGTCAGAGTCTTTAGATCCAGAAGTCTCTGTTTCTGAAGGGTTTTG 180
Query 177 TTCAAAGACCTTGATGCAGAGCATTGTTCATGAGCTGAAGCTGCAGATGAGAATTGGTTT 236
||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct 181 TTCAAAGACCTTGATGCAGAGCATTTTTCATGAGCTAAACCTGCAAATGAGAATTGGTTT 240
Query 237 GCCATTGGTGGTTATGAATTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 296
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCATTGGTGGTTATGAACTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 300
Query 297 TGGCCGTCAAGGTGAGCTTAACCTAGCCGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 TGGCCGTCAAGGTGAGCTTAACCTAGCTGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 360
Query 357 TACTGGCTTTTCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACTGGCTTTGCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 420
Query 417 TTTCGGAGCCAAGAACTTTAAGCTTCTTCATAAAACCCTTTTTATGGCAGTGCTCTTGCT 476
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 421 TTTCGGAGCCAAGAACTTTAAGCTTCTCCACAAAACCCTTTTTATGGCAGTGCTCTTGCT 480
Query 477 ACTCTTGATTTCGGTACCAATTTCTTTCTTGTGGCTCAATGTTCACAAGATCCTTACTGG 536
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 481 ACTCTTGATTTCGGTACCAATTTCTTCCTTGTGGCTCAATGTTCACAAGATACTTATTGG 540
Query 537 TTTTGGTCAAAGAGAAGATATTTCCTTCATAGCCAAGAAATATCTTCTCTACCTTCTTCC 596
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 TTTTGGTCAAAGAAAAGATATTTCCTTCATAGCCAAGAGATATCTTCTCTACCTTCTTCC 600
Query 597 AGAGTTGCCAATCCTCTCTTTTCTTTGTCCACTTAAGGCTTATTTAAGCTCACAAGGTGT 656
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 601 AGAGTTGCCAATCCTCTCTTTGCTTTGTCCACTTAAGGCTTACTTAAGCTCACAAGGTGT 660
Query 657 TACTCTTCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATCAACAT 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 AACTCTCCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATTAACAT 720
Query 717 AGTCCTCTCTAAAGCAAGAGGAATTGAAGGAGTTGCAATGGCGGTTTGGATAACTGATTT 776
| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 721 AATCCTCTCTAAAGCAAAAGGAATGGAAGGAGTTGCAATGGCGGTTTGGATAACCGATTT 780
Query 777 TATTGTTGTGATTCTTCTAACTGGATATGTGATAGTCGTAGAGCGAATGAAAGAGAACAA 836
||||||||| ||||||||||| || |||||||| |||| ||||||| ||||||||||||
Sbjct 781 TATTGTTGTCATTCTTCTAACCGGGTATGTGATTGTCGCAGAGCGATTGAAAGAGAACAT 840
Query 837 ATGGAAACAAGGTGGCTGGTTAAACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 896
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGGAAAGAAGGTGGCTGGTTTGACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 900
Query 897 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAATGGTGGTGCTACGAGATCTTGGTCCT 956
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAGTGGTGGTGCTACGAGATCTTGGTCCT 960
Query 957 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATTATAGTTTTCAA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 961 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATCATAGTTTTCAA 1020
Query 1017 CTTCGACTACTTGCTTTACGCGGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1076
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTCGACTACTTGCTTTACGCCGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1080
Query 1077 GTCCAATGAGCTCGGCGCAAATAATCCTAAGGGAGCTTATAGAGCAGCTTACACTACACT 1136
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1081 GTCCAATGAGCTTGGCGCAAATAATCCCAAGGGAGCTTATAGAGCAGCTTATACTACACT 1140
Query 1137 CATTGTGGGTATTATTTCAGGCTGCATTGGAGCATTAGTGATGATAGCATTTAGAGGTTT 1196
|||||||||| |||||||||| ||||||||||| |||||||||||| ||| ||||||| |
Sbjct 1141 CATTGTGGGTGTTATTTCAGGATGCATTGGAGCTTTAGTGATGATAACATGTAGAGGTGT 1200
Query 1197 TTGGGGGTCTTTGTATACTCACCATGACCAACTCATCTTAAACGGTGTGAAGAAGATGAT 1256
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 TTGGGGGTCTTTGTATACTCACCATGACCAAATCATCTTAAACGGTGTGAAGAAGATGAT 1260
Query 1257 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAATGGTTTGTGGAGAGATAGT 1316
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||
Sbjct 1261 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAGTGGTTTGCGGAGAGATTGT 1320
Query 1317 CCGCGGAACAGCGAAACCGTCTCTTGGAATGTATGCAAATCTTAGTGGATTCTATCTATT 1376
||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1321 ACGCGGAACAGCAAAACTGTCGCTTGGAATGTATGCAAATCTTACTGGATTCTATCTATT 1380
Query 1377 GGCTTTGCCTTTAGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTCAAGGGTTCTT 1436
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1381 GGCTTTGCCTTTGGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTGAAGGGTTCTT 1440
Query 1437 GATCGGGTTATTT-GTTGGTATATCTCTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1495
||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GATCGGGTT-TTTGGTCGGTATCTCTGTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1499
Query 1496 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGAGGACG 1555
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1500 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGTGGAAG 1559
Query 1556 AACAAACTTCACAAGGTTCA 1575
||||||||||||||||||||
Sbjct 1560 AACAAACTTCACAAGGTTCA 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5