BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22790.1 Length=1718 Score E Sequences producing significant alignments: (Bits) Value Ahg492589 jgi|Araly1|492589|fgenesh2_kg.7__2022__AT4G22790.1 2416 0.0 > Ahg492589 jgi|Araly1|492589|fgenesh2_kg.7__2022__AT4G22790.1 Length=1682 Score = 2416 bits (1308), Expect = 0.0 Identities = 1492/1580 (94%), Gaps = 16/1580 (1%) Strand=Plus/Plus Query 11 ttttttGTCATCTTTATCAACAAACAAACAACTATCTCTGCAAATTTGGCTGAAACCTCT 70 |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1 TTTTTTGTCATCTTCATCAACAAACAAACAACCATCTCTGCAAAATTGGCTGAAACCTCT 60 Query 71 TAAAAGTTCTTTGCTCTGTTCCAAATTA-TC-------CATATTTTCTACTAACAATAAT 122 || ||||||||| || |||||||||||| || || |||||||||||| || ||| Sbjct 61 TAGAAGTTCTTTCCTATGTTCCAAATTATTCATATTTTCAGATTTTCTACTAATAACAAT 120 Query 123 GTCAGAAACATCAAAGTCAGAGTCTTTAGATCCAGAAG--TC----TCTGAAGGGCTTTG 176 |||||||| ||||||||||||||||||||||||||||| || ||||||||| |||| Sbjct 121 GTCAGAAAAATCAAAGTCAGAGTCTTTAGATCCAGAAGTCTCTGTTTCTGAAGGGTTTTG 180 Query 177 TTCAAAGACCTTGATGCAGAGCATTGTTCATGAGCTGAAGCTGCAGATGAGAATTGGTTT 236 ||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||| Sbjct 181 TTCAAAGACCTTGATGCAGAGCATTTTTCATGAGCTAAACCTGCAAATGAGAATTGGTTT 240 Query 237 GCCATTGGTGGTTATGAATTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 296 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCCATTGGTGGTTATGAACTTGTTGTGGTTCGGTAAGATGACCACCACATCTGTGTTTCT 300 Query 297 TGGCCGTCAAGGTGAGCTTAACCTAGCCGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 356 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 TGGCCGTCAAGGTGAGCTTAACCTAGCTGGAGGTTCATTAGGGTTTTCCTTTGCAAACGT 360 Query 357 TACTGGCTTTTCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 416 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TACTGGCTTTGCTGTTTTGTATGGTATTTCTGCTGCAATGGAGCCTATTTGTGGCCAAGC 420 Query 417 TTTCGGAGCCAAGAACTTTAAGCTTCTTCATAAAACCCTTTTTATGGCAGTGCTCTTGCT 476 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 421 TTTCGGAGCCAAGAACTTTAAGCTTCTCCACAAAACCCTTTTTATGGCAGTGCTCTTGCT 480 Query 477 ACTCTTGATTTCGGTACCAATTTCTTTCTTGTGGCTCAATGTTCACAAGATCCTTACTGG 536 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| Sbjct 481 ACTCTTGATTTCGGTACCAATTTCTTCCTTGTGGCTCAATGTTCACAAGATACTTATTGG 540 Query 537 TTTTGGTCAAAGAGAAGATATTTCCTTCATAGCCAAGAAATATCTTCTCTACCTTCTTCC 596 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 541 TTTTGGTCAAAGAAAAGATATTTCCTTCATAGCCAAGAGATATCTTCTCTACCTTCTTCC 600 Query 597 AGAGTTGCCAATCCTCTCTTTTCTTTGTCCACTTAAGGCTTATTTAAGCTCACAAGGTGT 656 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 601 AGAGTTGCCAATCCTCTCTTTGCTTTGTCCACTTAAGGCTTACTTAAGCTCACAAGGTGT 660 Query 657 TACTCTTCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATCAACAT 716 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 661 AACTCTCCCCATCATGTTCACAACAGCTGCAGCCACTTCTCTTCATATCCCCATTAACAT 720 Query 717 AGTCCTCTCTAAAGCAAGAGGAATTGAAGGAGTTGCAATGGCGGTTTGGATAACTGATTT 776 | ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| Sbjct 721 AATCCTCTCTAAAGCAAAAGGAATGGAAGGAGTTGCAATGGCGGTTTGGATAACCGATTT 780 Query 777 TATTGTTGTGATTCTTCTAACTGGATATGTGATAGTCGTAGAGCGAATGAAAGAGAACAA 836 ||||||||| ||||||||||| || |||||||| |||| ||||||| |||||||||||| Sbjct 781 TATTGTTGTCATTCTTCTAACCGGGTATGTGATTGTCGCAGAGCGATTGAAAGAGAACAT 840 Query 837 ATGGAAACAAGGTGGCTGGTTAAACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 896 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 841 ATGGAAAGAAGGTGGCTGGTTTGACCAAAGTGCTCAAGACTGGCTCACACTGATCAAGCT 900 Query 897 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAATGGTGGTGCTACGAGATCTTGGTCCT 956 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 901 TAGTGGACCATGTTGTCTCACCGTGTGCCTTGAGTGGTGGTGCTACGAGATCTTGGTCCT 960 Query 957 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATTATAGTTTTCAA 1016 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 961 TTTAACCGGGAGGTTACCAAACCCGGTGCAAGCTGTATCAATCTTGATCATAGTTTTCAA 1020 Query 1017 CTTCGACTACTTGCTTTACGCGGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1076 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1021 CTTCGACTACTTGCTTTACGCCGTGATGCTCTCTTTAGGCACGTGTGTGGCAACAAGAGT 1080 Query 1077 GTCCAATGAGCTCGGCGCAAATAATCCTAAGGGAGCTTATAGAGCAGCTTACACTACACT 1136 |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1081 GTCCAATGAGCTTGGCGCAAATAATCCCAAGGGAGCTTATAGAGCAGCTTATACTACACT 1140 Query 1137 CATTGTGGGTATTATTTCAGGCTGCATTGGAGCATTAGTGATGATAGCATTTAGAGGTTT 1196 |||||||||| |||||||||| ||||||||||| |||||||||||| ||| ||||||| | Sbjct 1141 CATTGTGGGTGTTATTTCAGGATGCATTGGAGCTTTAGTGATGATAACATGTAGAGGTGT 1200 Query 1197 TTGGGGGTCTTTGTATACTCACCATGACCAACTCATCTTAAACGGTGTGAAGAAGATGAT 1256 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1201 TTGGGGGTCTTTGTATACTCACCATGACCAAATCATCTTAAACGGTGTGAAGAAGATGAT 1260 Query 1257 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAATGGTTTGTGGAGAGATAGT 1316 |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| || Sbjct 1261 GCTGATAATGGCGGTTATCGAAGTTGTAAACTTCCCATTAGTGGTTTGCGGAGAGATTGT 1320 Query 1317 CCGCGGAACAGCGAAACCGTCTCTTGGAATGTATGCAAATCTTAGTGGATTCTATCTATT 1376 ||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||| Sbjct 1321 ACGCGGAACAGCAAAACTGTCGCTTGGAATGTATGCAAATCTTACTGGATTCTATCTATT 1380 Query 1377 GGCTTTGCCTTTAGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTCAAGGGTTCTT 1436 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1381 GGCTTTGCCTTTGGGGGCAACTTTGGCGTTCAAGGCTAAACAAGGGCTTGAAGGGTTCTT 1440 Query 1437 GATCGGGTTATTT-GTTGGTATATCTCTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1495 ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1441 GATCGGGTT-TTTGGTCGGTATCTCTGTCTGTCTCTCGATATTGCTCATCTTTATTGCGA 1499 Query 1496 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGAGGACG 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1500 GGATAGATTGGGAGAAAGAAGCTGGGAAAGCACAGATTCTGACATGTAACACAGTGGAAG 1559 Query 1556 AACAAACTTCACAAGGTTCA 1575 |||||||||||||||||||| Sbjct 1560 AACAAACTTCACAAGGTTCA 1579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64448694540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5