BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22810.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492588 jgi|Araly1|492588|fgenesh2_kg.7__2021__AT4G22810.1 2242 0.0
Ahg490024 jgi|Araly1|490024|fgenesh2_kg.6__3158__AT4G12050.1 553 2e-156
Ahg935500 jgi|Araly1|935500|scaffold_403488.1 189 5e-47
> Ahg492588 jgi|Araly1|492588|fgenesh2_kg.7__2021__AT4G22810.1
Length=1542
Score = 2242 bits (1214), Expect = 0.0
Identities = 1458/1569 (93%), Gaps = 43/1569 (3%)
Strand=Plus/Plus
Query 11 TTTCACTTCCTCCAACTCAAAGAAAGAGATCAGAAGCTATAGCTATACACCAAAACTAGG 70
||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |||
Sbjct 1 TTTCACTTCCTCCAACTCAAAGAAAGAGATCAGAAGCTACAGATATACAACAAAACAAGG 60
Query 71 TATAGAGAGAGAAACCCTACAAAATCAAAAGGAAGAAGAGACGAAGATGAAGAAGATCCA 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATAGAGAGAGAAACCCTACAAAATCAAAAGGAAGAAGAGACGAAGATGAAGAAGATCCA 120
Query 131 GCTTGGATTTCGTTGTTCATCATTACTACTCTCTTTCTTCTTCTAGCTAGCTAGTTTTGA 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTGGATTTCGTTGTTCATCATTACTACTCTCTTTCTTCTTCTAGCTAGCTAGTTTTGA 180
Query 191 CAGCAAAATAAGAAGCaaaaaaaaGGTC-AACTAAAAAAGATCTGTTCTTAGATCACTCT 249
|| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 181 CAACAAAATAAGAAGC-AAAAAAAGGTCAAAGTAAAAAAGATCTGTTCTTAGATCACTCT 239
Query 250 CTTCTTCtttttttGATCCAATTCCACCATTGAATCATAGATCATGGATCCAGTACAATC 309
|||| || |||||||||||||||||| ||||||||||||||||| | | |
Sbjct 240 CTTC-TC--TTTTTGATCCAATTCCACAATTGAATCATAGATCAT-G-----G----A-- 284
Query 310 TCATGGATCACAAAGCTCTCTACCTCCTCCTTTCCACGCAAGAGACTTTCAATTACATCT 369
||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 285 TCATGGAACACAAAACTCTCTACCTGCTCCTTTCCACGCAAGAGACTTTCAATTACATCT 344
Query 370 TCAACAACAGCAACAAGAGTTCTTCCTCCACCATCACCAGCAACAAAGAAACCAAACCGA 429
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 345 CCAACAACAACAACAAGAGTTCTTCCTCCACCACCACCAGCAACAAAGAAACCAAACCGA 404
Query 430 TGGTGACCAACAAGGAGGATCAGGAGGAAACCGACAAATCAAGATGGATCGTGAAGAGAC 489
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGATGATCAACAAGGAGGATCAGGAGGAAACCGACAAATCAAGATGGATCGTGAAGAGAC 464
Query 490 AAGCGACAACATAGACAACATAGCTAACAACAGCGGTAGTGAAGGTAAAGACATAGATAT 549
|||||||||||| | |||||||||||||||||||||||||| ||||||||| |
Sbjct 465 AAGCGACAACAT------C---GCTAACAACAGCGGTAGTGAAGGTAAGGACATAGATTT 515
Query 550 ACACGGTGGTTCAGGAGAAGGAGGTGGTGGCTCCGGAGGAGATCATCAGATGACAAGAAG 609
|||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 516 ACACGGAGGTTCGGGAGAAGGAGGCGGCGGCTCTGGAGGAGATCATCAGATGACAAGAAG 575
Query 610 ACCAAGAGGAAGACCAGCGGGATCCAAGAACAAACCAAAACCACCGATTATCATCACACG 669
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 576 ACCAAGAGGAAGACCAGCTGGATCCAAGAACAAACCAAAACCACCGATTATCGTCACGCG 635
Query 670 GGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAGATCGGAGATGGCTGCGA-CTTAG 728
||||||||||||||||||||||||||||||||||||||| ||||| || || || || ||
Sbjct 636 GGACAGCGCAAACGCGCTTAGAACCCACGTGATGGAGATTGGAGACGGATGTGATCT-AG 694
Query 729 TCGAAAGCGTTGCCACTTTTGCACGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTA 788
|||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 695 TCGAGAGCGTGGCCACTTTCGCAAGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTA 754
Query 789 CTGGAAATGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGG 848
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 CTGGAAACGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGG 814
Query 849 TAGTTAGTCTTCACGGAAGGTTCGAGATTCTATCTCTCTCAGGATCTTTTCTCCCTCCTC 908
| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |
Sbjct 815 TCGTTAGTCTTCACGGAAGGTTCGAGATTCTCTCTCTCTCTGGCTCTTTTCTCCCTCCGC 874
Query 909 CGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACCTCGCTGGAGGACAAGGACAGGTGG 968
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 875 CGGCTCCTCCTACAGCCACCGGATTGAGTGTTTACCTCGCCGGAGGACAAGGACAAGTAG 934
Query 969 TTGGAGGAAGCGTAGTTGGTCCGTTGTTATGTGCTGGTCCTGTCGTTGTCATGGCTGCGT 1028
| || |||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||
Sbjct 935 TCGGTGGAAGCGTGGTTGGTCCATTGTTGTGTGCTGGTCCTGTTGTTGTTATGGCTGCGT 994
Query 1029 CTTTTAGCAATGCGGCGTACGAAAGGTTGCCTTTAGAGGAAGATGAGATGCAGACGCCGG 1088
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 995 CTTTTAGCAATGCGGCGTACGAGAGGTTGCCGTTAGAAGAAGATGAGATGCAGACGCCGG 1054
Query 1089 TTCATGGCGGAGGAGGAGGAGGA------TCATTGGAGTCGCCGCCAATGATGGGACAAC 1142
|||| |||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1055 TTCACGGCGGAGGAGGAGGAGGAGGAGGATCAATGGAGTCGCCGCCGATGATGGGACAAC 1114
Query 1143 AACTGCAACATCAGCAACAAGCTATGTCAGGTCATCAAGGGTTACCACCTAATCTTCTTG 1202
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1115 AACTGCAACATCAGCAACAAGCTATGTCGGGTCATCAAGGGTTACCACCTAATCTTCTTG 1174
Query 1203 GTTCGGTTCAGTTGCAGCAGCAACATGATCAGTCTTATTGGTCAACGGGACGACCACCGT 1262
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1175 GTTCGGTTCAGTTGCAGCAGCAGCATGATCAGTCTTATTGGTCAACGGGACGACCACCGT 1234
Query 1263 ATTGATCAAATATA--CACA----CACACTCATAATCGT-T-GCTAGCTAGCTAACGATG 1314
|||||||||||||| || | ||||||||| ||||| | |||||||||||||||| |
Sbjct 1235 ATTGATCAAATATATTCATATATACACACTCATCATCGTATAGCTAGCTAGCTAACGAAG 1294
Query 1315 AATCATGAGTTTAGTGGATATATATATGATTAAAAGAGGTTAGCTTATGAACATTAATAA 1374
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1295 AATCATGAGTTTAGTGGATATATCTATGATTAAAAGAGGTTAGCTTATGAACATTAATAA 1354
Query 1375 GAGTTTGGATTCTATCGAGCTTCATTATGTTTGGGTCAACGTTCATAAGATGAACCAGGT 1434
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1355 GAGATTGGATTTTATCGAGCTTCATTATGTTTTGGTCAACGTTCATAAGATGAATCAGGT 1414
Query 1435 TCttttttctcaaatttttattttggttcgtttttagctcgtagatctttttatgttgat 1494
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1415 TCTTTTTTCTTAAATTTTTATTTTGGTTCGTTTT-AGCTCGTAGATCTTTTTATGTTGAT 1473
Query 1495 tttagtaacatttttctgtttgtcttggtttttctttgATGAATTCTCATTGCTAGTTTG 1554
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TTGAGTAACATTTTTCTTTTTGTCTTGGTTTTTCTTTGATGAATTCTCATTGCTAGTTTG 1533
Query 1555 CATTTGATT 1563
|||||||||
Sbjct 1534 CATTTGATT 1542
> Ahg490024 jgi|Araly1|490024|fgenesh2_kg.6__3158__AT4G12050.1
Length=1480
Score = 553 bits (299), Expect = 2e-156
Identities = 807/1036 (78%), Gaps = 99/1036 (10%)
Strand=Plus/Plus
Query 293 ATGGATCCAGTACAATCTCATGGATCACAAAGCTCTCTACCTCCTCCTTTCCACGCAAGA 352
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 169 ATGGATCCAGTTCAATCTCATGGATCACAAAGCTCTCTTCCTCCTCCTTTCCACGCTAGA 228
Query 353 GACTTTCAATTACATCTT------------------CAAC-A-A-CAGCAAC-A-AG-AG 388
||||| |||||||||||| |||| | | || |||| | || ||
Sbjct 229 GACTTCCAATTACATCTTCAACAACAACAACAACAACAACAACATCAACAACAACAGCAG 288
Query 389 TTCTTCCTCCACCATCA-C--CAGCAACAAAGAAA-CC-AAAC-CGATGGTGACCAACAA 442
||||| ||||||||||| | |||| || ||||| || | | ||| ||| || |||
Sbjct 289 TTCTTTCTCCACCATCATCAGCAGCCGCAGAGAAACCCTGATCAAGATCATGAGCAGCAA 348
Query 443 GGAGGATC-AGGAGGAAACCGA-CAAATCAAGATGGATCGTGAAGAGACAAGCGACAACA 500
||||| || | | | || ||| | ||||||||||||||||||||||||||||| ||||
Sbjct 349 GGAGGGTCAATAATG-AATCGATC-CATCAAGATGGATCGTGAAGAGACAAGCGATAACA 406
Query 501 TAGACAACATAGCTAACAACA---GCGGTAGTGAAGGTAAAGACAT-AGATATACACGGT 556
| |||||||| |||||||||| ||||||| ||||||||||| || || | |||||||
Sbjct 407 TGGACAACATCGCTAACAACAACAGCGGTAGCGAAGGTAAAGAGATGAGTT-TACACGG- 464
Query 557 GGTTCAGGAGAAGGAGGTGGTGGCTCCGGAGGAGATCATCAGATGACAAGAAGACCAAGA 616
|| | ||||||||| | | |||| | | || |||||||||||| ||||||
Sbjct 465 GG----G-AGAAGGAGGAAG---C---GGAG-A-A-CA---GATGACAAGAAGGCCAAGA 507
Query 617 GGAAGACCAGCGGGATCCAAGAACAAACCAAAACCACCGATTATCATCACACGGGACAGC 676
||||||||||| ||||||||||||||||| ||| | || || ||||| ||| | ||||||
Sbjct 508 GGAAGACCAGCAGGATCCAAGAACAAACCTAAAGCTCCAATAATCATTACAAGAGACAGC 567
Query 677 GCAAACGCGCTTAGAACCCACGTGATGGAGATCGGAGATGGCTGCGACTTAGTCGAAAGC 736
|||||||||||| |||| ||||| ||||||||||||||||| || ||| |||| || |
Sbjct 568 GCAAACGCGCTTCGAACTCACGTCATGGAGATCGGAGATGGATGTGACATAGTTGACTGT 627
Query 737 GTTGCCACTTTTGC-ACGAAGACGCCAACGCGGCGTTTGCGTTATGAGCGGTACTGGAAA 795
| || || || || | || | |||||| | ||||||||||||||||||||||| |||||
Sbjct 628 ATGGCTACGTTCGCTA-GACGCCGCCAAAGAGGCGTTTGCGTTATGAGCGGTACAGGAAA 686
Query 796 TGTTACTAACGTCACTATACGTCAGCCTGGATCTCATCCTTCTCCTGGCTCGGTAGTTAG 855
|||||||||||||| ||||||||||||||||| | | | | |||||| || |||||
Sbjct 687 CGTTACTAACGTCACGATACGTCAGCCTGGATCGC--CA--C-C-TGGCTCAGTGGTTAG 740
Query 856 TCTTCACGGAAGGTTCGAGATTCTATCTCTCTCAGGATCTTTTCTC-CCTCCTCCGGCTC 914
|||||||| |||| || || || ||||| || |||||||| || || || || || |
Sbjct 741 CCTTCACGGCCGGTTTGAAATCCTCTCTCTTTCCGGATCTTT-CTTGCCACCGCCTGCGC 799
Query 915 CTCCTACAGCCACCGGATTGAGTGTTTACCTCGCTGGAGGACAAGGACAGGTGGTTGGAG 974
||||| ||||||| ||| | || |||||||| |||||||||||||| ||||| |||||||
Sbjct 800 CTCCTGCAGCCACTGGACTAAGCGTTTACCTAGCTGGAGGACAAGGGCAGGTCGTTGGAG 859
Query 975 GAAGCGTAGTTGGTCCGTTGTTATGTGCTGGTCCTGTCGTTGTCATGGCTGCGTCTTTTA 1034
| || || || || || ||||| ||| | |||||||| || || ||||| ||||||||||
Sbjct 860 GTAGTGTGGTGGGACCTTTGTTGTGTTCGGGTCCTGTAGTGGTTATGGCGGCGTCTTTTA 919
Query 1035 GCAATGCGGCGTACGAAAGGTTGCCTTTAGAGGAAGATGAGATGCAGACGCCGGTTCATG 1094
|||||||||| ||||| ||| | ||||| || |||||||||||||||||||| ||||| |
Sbjct 920 GCAATGCGGCTTACGAGAGGCTACCTTTGGAAGAAGATGAGATGCAGACGCCAGTTCACG 979
Query 1095 G---CGGAGGAGGAGG---AG--G-A--TC-ATTGG-AGTCGCCGCCAATGATGGGACAA 1141
| ||| |||||||| || | | | | ||| | || ||||| |||||||| ||
Sbjct 980 GAGGCGGTGGAGGAGGTGGAGAAGGAGGTGGAATGGGA-TCTCCGCCGATGATGGGGCAG 1038
Query 1142 CAACT-GCAACATCAGCAACAAGCTATGTCAG-GTCATCAAGGGTTACCACCTAATCTTC 1199
|||| || | | ||| |||||| | | | | |||||| ||||||| |||||||
Sbjct 1039 CAACAAGCTA--TG-GCA----GCTATGGCGGCGGC-TCAAGGACTACCACCGAATCTTC 1090
Query 1200 TTGGTTCGGTTCAGTTGCAGCAGC-A-A-CA---TGATCAGTCT-TATTGGTCAACGGGA 1252
|||||||||||||||||| || || | | || ||||||| | |||||||| |||||
Sbjct 1091 TTGGTTCGGTTCAGTTGCCGCCGCCACAGCAGAATGATCAG-CAGTATTGGTCTACGGGT 1149
Query 1253 CGACCACCGTATTGAT 1268
||||||||||||||||
Sbjct 1150 CGACCACCGTATTGAT 1165
> Ahg935500 jgi|Araly1|935500|scaffold_403488.1
Length=999
Score = 189 bits (102), Expect = 5e-47
Identities = 380/510 (75%), Gaps = 35/510 (7%)
Strand=Plus/Plus
Query 584 GGAGGAGATC-ATCAGATGACAAGAAGACCAAGAGGAAGACCAGCGGGATCCAAGAACAA 642
|||||||| | |||| || || ||||| ||| | || |||||||||||||||||||||||
Sbjct 261 GGAGGAGA-CAATCATATCACGAGAAGGCCACGTGGCAGACCAGCGGGATCCAAGAACAA 319
Query 643 ACCAAAACCACCGATTATCATCACACGGGACAGCGCAAACGCGCTTAGAACC-CACGTGA 701
|||||||||||| || |||||||| || |||||||||||||| || | || | || || |
Sbjct 320 ACCAAAACCACCAATCATCATCACTCGAGACAGCGCAAACGCTCTCA-AATCTCATGTCA 378
Query 702 TGGA-GATCGGAGATGGCTGCGACTT-AGTCGAAAGCGTTGCCA-CTTTTGCACGAAGAC 758
|||| | | | | | || || ||| | | | ||||| || || ||| || || | |
Sbjct 379 TGGAAG-TAGCAAACGGATGTGACGTCA-TGGAAAGTGTCACCGTCTTC-GCTCGCCGTC 435
Query 759 GCCAACGCGGCGTTTGCGTTATGAGCGGTA-CTGGAAATGTTACTAACGTCACTATACGT 817
||||||| ||| | |||||| ||||||| | | || ||||| ||||| || ||| |
Sbjct 436 GCCAACGTGGCATCTGCGTTTTGAGCGGAAAC-GGCGCCGTTACCAACGTTACCATAAGA 494
Query 818 CAGCCTGGATCTCA-T-CCTTCTCCTGGCTCG---GTAGTTAGTCTT-CACGGAAGGTTC 871
|| || | | ||| | ||| | |||||| || |||| ||| |||||| | |||
Sbjct 495 CAACCAGC-T-TCAGTACCTGGTGGTGGCTCATCTGTCGTTAA-CTTACACGGACGTTTC 551
Query 872 GAGATTCTATCTCTCTCAGGATCTTTTCT-CCCTCCTCCGGCTCCTCCTA-CAGCCACCG 929
|||||||| |||||||| |||||||| || ||| ||||||||||| || | | || | |
Sbjct 552 GAGATTCTTTCTCTCTCGGGATCTTTCCTTCCC-CCTCCGGCTCCACC-AGCTGCGTCAG 609
Query 930 GATTGA-GTGTTTACCTCGCTGGAGGACAAGGACAGGTGGTTGGAGGAAGCGTAGTTGGT 988
|| | | | ||||| | || || || || |||||||| |||||||||||||| ||||||
Sbjct 610 GACTAACGA-TTTACTTAGCCGGTGGTCAGGGACAGGTCGTTGGAGGAAGCGTGGTTGGT 668
Query 989 CCGTTGTTATGTGCT---GGTCCTGTCGTTG-TCATGGCTGCGTCTTTTAGCAATGCGGC 1044
|| | ||| ||| || || || || | | |||||||| || ||| | || || ||
Sbjct 669 CCACTC--ATG-GCTTCAGGACCAGTAGT-GATTATGGCTGCTTCGTTTGGGAACGCTGC 724
Query 1045 GTACGAAAGGTTGCCTTTAGAGGAAGATGA 1074
||| || || ||||| ||||||||||||||
Sbjct 725 GTATGAGAGATTGCCGTTAGAGGAAGATGA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5