BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22820.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945838 jgi|Araly1|945838|scaffold_702067.1 715 0.0
> Ahg945838 jgi|Araly1|945838|scaffold_702067.1
Length=580
Score = 715 bits (387), Expect = 0.0
Identities = 514/571 (90%), Gaps = 26/571 (5%)
Strand=Plus/Plus
Query 220 AGAGTAAGAATGGGATCGGAACAAAACGATAGCACAAGCTTCACGCAATCGCAAGCTTCA 279
||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 15 AGAGTGATAATGGGATCGGAACAAAACGATAGCACAAGCTTCACGCAGTCGCAAGCTTCA 74
Query 280 GAGCCAAAGCTATGTGTTAAAGGATGTGGTTTCTTTGGATCACCATCAAACATGGATCTC 339
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAGCCAAAGCTATGTACTAAAGGATGTGGTTTCTTTGGATCACCATCAAACATGGATCTA 134
Query 340 TGTTCTAAATGTTACAGAGGCATTTGTGCTGAGGAAGCTCAAACAGCAGTTGCT-AAAGC 398
||||| |||||||||||| |||||||||| |||||||||||||||||||||| | |||||
Sbjct 135 TGTTCGAAATGTTACAGAAGCATTTGTGCAGAGGAAGCTCAAACAGCAGTTG-TAAAAGC 193
Query 399 TGCTGTTGAAAAATCTTTCAAG-C--CT--TC-T-C-C-T-C--CTCGTAGTCTCTTCAT 446
|||||||||||||||||||||| | || || | | | | | ||||||||||||||||
Sbjct 194 TGCTGTTGAAAAATCTTTCAAGCCATCTCCTCTTCCTCTTCCTTCTCGTAGTCTCTTCAT 253
Query 447 AGCAGAACCTCCTGCTGTTGTTGTGGAACCCAAACCCGAAAAGGCGGCAGTTGTTGTTGT 506
||| ||| || | | ||||||| ||||| |||||||||| ||| |||||||||||
Sbjct 254 AGCGGAA---CC-G--GCTGTTGTGAAACCCGAACCCGAAAA---GGCTGTTGTTGTTGT 304
Query 507 CTCGGCCGAGCCATCTTCCTCGGCGGTTCCTGAGGCGAACGAGCCATCGAGACCTGCACG 566
||||| |||||||||||| | ||||||||||||| || ||||||| |||||||||||||
Sbjct 305 GTCGGCTGAGCCATCTTCCGCAGCGGTTCCTGAGGAGAGCGAGCCAACGAGACCTGCACG 364
Query 567 A---ACCAACCGGTGTTTGTGTTGTAACAAGAAGGTTGGGATCATGGGGTTTAAGTGCAA 623
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 ACCTACTAACCGATGTTTGTGTTGTAACAAGAAGGTTGGGATCATGGGGTTTAAGTGCAA 424
Query 624 ATGCGGGAGCACTTTCTGCGGCGAACATCGGTACCCGGAGACTCATGATTGCAGCTTTGA 683
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 425 ATGCGGGAGCACTTTCTGCGGCGATCATCGGTACCCGGAGACTCATGATTGCAGCTTTGA 484
Query 684 TTTCAAAGAAGTTGGACGTGGAGAGATTGCCAAAGCTAATCCTGTGGTTAAGGCTGATAA 743
|||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 485 TTTCAAAGAAACTGGGCGCGGAGAGATTGCCAAAGCCAATCCTGTGGTTAAGGCTGATAA 544
Query 744 AATTCAAAGGTTCTGAAATATGGAAGTTTTT 774
| ||||||||||||||||||| |||||||||
Sbjct 545 ACTTCAAAGGTTCTGAAATATTGAAGTTTTT 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5