BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22830.2
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945837 jgi|Araly1|945837|scaffold_702066.1 688 0.0
> Ahg945837 jgi|Araly1|945837|scaffold_702066.1
Length=613
Score = 688 bits (372), Expect = 0.0
Identities = 466/510 (91%), Gaps = 11/510 (2%)
Strand=Plus/Plus
Query 128 CTTCTTCTCTCACCACCTCTAACGAACCTGTAATTCGGATCCGAAGCCGCAGTTTAATTC 187
||||| |||||||||||| | | || | | || | ||||||| |||||||| ||||| |
Sbjct 103 CTTCTCCTCTCACCACCT-T-A--AA-C-GAAAGTGGGATCCGGAGCCGCAGCTTAATCC 156
Query 188 ATGACCCGGTTGCGCTGTCGGGTCTTATCGGAACCAGTTTGGTTGCGGCTGCTTTCATCA 247
|||||||| || ||||||||||||||||||||||| ||||| | |||||||| |||||||
Sbjct 157 ATGACCCGATTACGCTGTCGGGTCTTATCGGAACCGGTTTGATGGCGGCTGCGTTCATCA 216
Query 248 CGGCGGGACCAGATGCTACTGCTTTGGCGGCGGTGGTGGATTCTCTTCAGCTAAGCGAAC 307
|||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 217 CGGCGGGACCAGATTCTACAGCTATGGCGGC---GGTGGATTCTCTTCAGCTAAGCGAAC 273
Query 308 CGT-CCAATGCGTTGTCTTTACCCACTTGGGCCGTTCATGTTTCCAGCGTTGTCGAATGG 366
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 274 C-TGCTAATGCGTTGTCTTTACCCACTTGGGCTGTTCATGTTTCCAGCGTTGTCGAATGG 332
Query 367 ATTACGGCGATGGCATTGGTATGGAAGTATGGAGAAAGAAAGGGTTATGAGTCTTGGAAA 426
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 333 ATTACGGCGATGGCGTTGGTATGGAAATATGGAGAAAGAAAGGGTTATGAGTCTTGGAAA 392
Query 427 GGTCTCTCATGGGGAATGGTACCTTTGCTTGGTGGAGCTCTCTGTGCATGCACATGGCAT 486
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 393 GGTCTCTCATGGGGAATGGTACCTTTGCTTGGTGGAGCTCTTTGTGCATGCACATGGCAT 452
Query 487 TTCTTCTACAACGATGAATCTCTTGAGGTGTTGGTCGCTCTTCAGGCAGCACTAACGGTG 546
||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 453 TTCTTTTACAATGATGAATCTCTTGAGGTGTTGGTCGCGCTTCAGGCGGCACTAACTGTA 512
Query 547 TTTGGTAATATCACTCTCTGCATTGCTGCCTTTCGGATCAACAAGTTGTCATCCAAAATT 606
|| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 513 TTCGGTAATATTACTCTGTGCATTGCTGCCTTTCGAATCAACAAGTTGTCATCCAAAATT 572
Query 607 GAAGTCTCTGAAAAGCCATGATGGCTAAAC 636
|||||||||||||| ||||||||||| |||
Sbjct 573 GAAGTCTCTGAAAAACCATGATGGCTTAAC 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5