BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22840.1 Length=1463 Score E Sequences producing significant alignments: (Bits) Value Ahg945834 jgi|Araly1|945834|scaffold_702063.1 1864 0.0 > Ahg945834 jgi|Araly1|945834|scaffold_702063.1 Length=1261 Score = 1864 bits (1009), Expect = 0.0 Identities = 1187/1271 (93%), Gaps = 19/1271 (1%) Strand=Plus/Plus Query 78 AAGTCCAAAGaa-aaaaa-aTGAGCGTGATCACAACTCCAATAGAGACCCTGCACCTAAA 135 ||||| |||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| Sbjct 2 AAGTCAAAAGAAGAAAAAGATGAGTGTGATCACAACTCCAATAGAAACCCTGCACCTAAA 61 Query 136 GTCAACACTTCGTCTTCTACCACGAGCTGTTTATCGCAGTCAACGGATTCAAGTTTTCCC 195 |||||||||||||||||||||||||||||||||| | | | | | |||||||||||| Sbjct 62 GTCAACACTTCGTCTTCTACCACGAGCTGTTTAT--C-G-C-A--G--TCAAGTTTTCCC 112 Query 196 GCCCAACATCTTCTCGAACACTTCTCTGAGTTCTCCACTTCGCATCGACCCAATCTCTCA 255 ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| Sbjct 113 GCCCAACATCTTCTCGAACTCTTCTCTGAGTTCTCCACTTCGAATTGACCCAATCTCTCA 172 Query 256 AGTTGG--CGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAATTTCTCGGAGATG 313 || || ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 173 AG--GGATCGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAAGTTCTCGGAGATG 230 Query 314 GGTTTGGATCCTGGAGCTGATCCA-TTCAAGGTTATTGAGAAGCCTTCTATAGTGGATAG 372 ||||| ||||||| |||| || || || ||||||||||| ||| ||||||||||||||| Sbjct 231 GGTTTAGATCCTGAAGCTAATTCAGTT-AAGGTTATTGACAAGGCTTCTATAGTGGATAC 289 Query 373 AATGAAGAAAGCAAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATATTAGCTCT 432 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 290 AATGAAGAAAGCTAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATTTTAGCTCT 349 Query 433 TATCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTTGTGCCCGCTTTAGGTTT 492 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 350 TCTCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTCGTGCCCGCTTTAGGGTT 409 Query 493 TTTGATGTTTGCGGTTGGTATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 552 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 410 CTTGATGTTTGCTGTTGGCATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 469 Query 553 ACCAAAAGCTATCCTCCTCGGTTATGTTGGACAATATCTCGTAAAGCCTGTCCTAGGTTT 612 |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 470 ACCAAAAGCTATTCTCCTTGGTTATGTTGGACAATATCTCGTAAAGCCAATCCTAGGTTT 529 Query 613 CATCTTTGGCCTAGCTGCTGTTTCTCTTTTCCAACTCCCAACTCCAATTGGTGCTGGAAT 672 |||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||| Sbjct 530 CATCTTTGGCCTAGCTGCGGTGTCTGTATTCCAACTCCCAACTCCAATTGGTGCTGGAAT 589 Query 673 CATGTTGGTATCATGTGTTAGTGGAGCTCAGTTGTCAAACTATGCGACATTCCTAACTGA 732 ||||||||| ||||||||||||||||||||||| |||||||| || || ||| ||||||| Sbjct 590 CATGTTGGTTTCATGTGTTAGTGGAGCTCAGTTATCAAACTACGCAACTTTCTTAACTGA 649 Query 733 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCGGTTCT 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 650 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCAGTTCT 709 Query 793 TGTCACACCGATGCTATCACTCCTGCTCATTGGGAAGAAACTACCCGTTGATGTAAAAGG 852 |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||| Sbjct 710 TGTCACACCGATGCTATCTCTCTTGCTCATTGGGAAGAAATTACCCGTTGATGTGAAAGG 769 Query 853 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 829 Query 913 CAAGTTGTTCCCAAAAGTATCAAATGCAATCCGACCATTTCTCCCGATTCTATCGGTTCT 972 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 830 CAAGTTGTTCCCAAAAGTATCTAATGCAATCCGACCATTTCTACCAATTCTATCGGTTCT 889 Query 973 CGACACAGCTTGCTGCGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 1032 ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 TGACACGGCTTGTTGTGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 949 Query 1033 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1009 Query 1093 ATACTTCCTTACCGGTTCTGTCTTTAGAAACGCTCCAGACGCTAAAGCCATGCAAAGAAC 1152 ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1010 ATACTTCCTTACCGGCTCCGTCTTTAGAAATGCTCCAGACGCTAAAGCCATGCAAAGAAC 1069 Query 1153 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCTACTAAGTT 1212 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1070 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCGACTAAGTT 1129 Query 1213 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTATATCTACGGTGGTAATGTCATTGAT 1272 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1130 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTGTCTCTACGGTGGTAATGTCATTGAT 1189 Query 1273 GGGGTTCACTCTCGTTTTGATCTGGTCTAAGGAAAA-GAGTAACACATTTTAACATTTTG 1331 ||||||||| || ||| ||||||||||||| ||||| ||| || |||||| |||| | | Sbjct 1190 GGGGTTCACGCTTGTTATGATCTGGTCTAACGAAAAAGAGAAAAACATTT-AACAATGTA 1248 Query 1332 ATTTTGTTTCA 1342 |||| ||||| Sbjct 1249 ATTTAATTTCA 1259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54735682065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5