BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22840.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945834 jgi|Araly1|945834|scaffold_702063.1 1864 0.0
> Ahg945834 jgi|Araly1|945834|scaffold_702063.1
Length=1261
Score = 1864 bits (1009), Expect = 0.0
Identities = 1187/1271 (93%), Gaps = 19/1271 (1%)
Strand=Plus/Plus
Query 78 AAGTCCAAAGaa-aaaaa-aTGAGCGTGATCACAACTCCAATAGAGACCCTGCACCTAAA 135
||||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2 AAGTCAAAAGAAGAAAAAGATGAGTGTGATCACAACTCCAATAGAAACCCTGCACCTAAA 61
Query 136 GTCAACACTTCGTCTTCTACCACGAGCTGTTTATCGCAGTCAACGGATTCAAGTTTTCCC 195
|||||||||||||||||||||||||||||||||| | | | | | ||||||||||||
Sbjct 62 GTCAACACTTCGTCTTCTACCACGAGCTGTTTAT--C-G-C-A--G--TCAAGTTTTCCC 112
Query 196 GCCCAACATCTTCTCGAACACTTCTCTGAGTTCTCCACTTCGCATCGACCCAATCTCTCA 255
||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 113 GCCCAACATCTTCTCGAACTCTTCTCTGAGTTCTCCACTTCGAATTGACCCAATCTCTCA 172
Query 256 AGTTGG--CGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAATTTCTCGGAGATG 313
|| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 173 AG--GGATCGGATCGAGGAATTTGTGGCGTAGATATGCATCTGATAAGTTCTCGGAGATG 230
Query 314 GGTTTGGATCCTGGAGCTGATCCA-TTCAAGGTTATTGAGAAGCCTTCTATAGTGGATAG 372
||||| ||||||| |||| || || || ||||||||||| ||| |||||||||||||||
Sbjct 231 GGTTTAGATCCTGAAGCTAATTCAGTT-AAGGTTATTGACAAGGCTTCTATAGTGGATAC 289
Query 373 AATGAAGAAAGCAAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATATTAGCTCT 432
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 290 AATGAAGAAAGCTAACTCAATTCTTCCTCATGTAGTGTTGGCGAGTACAATTTTAGCTCT 349
Query 433 TATCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTTGTGCCCGCTTTAGGTTT 492
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 350 TCTCTATCCTCCTTCTTTCACTTGGTTTACGTCGAGGTACTTCGTGCCCGCTTTAGGGTT 409
Query 493 TTTGATGTTTGCGGTTGGTATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 552
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CTTGATGTTTGCTGTTGGCATCAATTCAAACGAGAAAGACTTTCTTGAAGCTTTCAAAAG 469
Query 553 ACCAAAAGCTATCCTCCTCGGTTATGTTGGACAATATCTCGTAAAGCCTGTCCTAGGTTT 612
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 ACCAAAAGCTATTCTCCTTGGTTATGTTGGACAATATCTCGTAAAGCCAATCCTAGGTTT 529
Query 613 CATCTTTGGCCTAGCTGCTGTTTCTCTTTTCCAACTCCCAACTCCAATTGGTGCTGGAAT 672
|||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||
Sbjct 530 CATCTTTGGCCTAGCTGCGGTGTCTGTATTCCAACTCCCAACTCCAATTGGTGCTGGAAT 589
Query 673 CATGTTGGTATCATGTGTTAGTGGAGCTCAGTTGTCAAACTATGCGACATTCCTAACTGA 732
||||||||| ||||||||||||||||||||||| |||||||| || || ||| |||||||
Sbjct 590 CATGTTGGTTTCATGTGTTAGTGGAGCTCAGTTATCAAACTACGCAACTTTCTTAACTGA 649
Query 733 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCGGTTCT 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 650 TCCAGCATTGGCACCTCTTAGCATCGTCATGACATCTCTATCAACCGCTACTGCAGTTCT 709
Query 793 TGTCACACCGATGCTATCACTCCTGCTCATTGGGAAGAAACTACCCGTTGATGTAAAAGG 852
|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 710 TGTCACACCGATGCTATCTCTCTTGCTCATTGGGAAGAAATTACCCGTTGATGTGAAAGG 769
Query 853 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AATGATATCCAGCATTCTTCAGGTTGTAATCGCACCAATCGCTGCAGGATTGCTACTAAA 829
Query 913 CAAGTTGTTCCCAAAAGTATCAAATGCAATCCGACCATTTCTCCCGATTCTATCGGTTCT 972
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 830 CAAGTTGTTCCCAAAAGTATCTAATGCAATCCGACCATTTCTACCAATTCTATCGGTTCT 889
Query 973 CGACACAGCTTGCTGCGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 1032
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TGACACGGCTTGTTGTGTTGGAGCACCACTCGCATTGAACATAAACTCGGTCATGTCTCC 949
Query 1033 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ATTTGGAGCCACCATATTGTTACTAGTAACAATGTTTCATCTCTCAGCTTTCCTCGCTGG 1009
Query 1093 ATACTTCCTTACCGGTTCTGTCTTTAGAAACGCTCCAGACGCTAAAGCCATGCAAAGAAC 1152
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1010 ATACTTCCTTACCGGCTCCGTCTTTAGAAATGCTCCAGACGCTAAAGCCATGCAAAGAAC 1069
Query 1153 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCTACTAAGTT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1070 ATTGTCCTATGAAACTGGAATGCAGAGTAGCCTTTTGGCTCTAGCGCTTGCGACTAAGTT 1129
Query 1213 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTATATCTACGGTGGTAATGTCATTGAT 1272
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1130 CTTTCAAGATCCTCTTGTGGGGATTCCTCCTGCTGTCTCTACGGTGGTAATGTCATTGAT 1189
Query 1273 GGGGTTCACTCTCGTTTTGATCTGGTCTAAGGAAAA-GAGTAACACATTTTAACATTTTG 1331
||||||||| || ||| ||||||||||||| ||||| ||| || |||||| |||| | |
Sbjct 1190 GGGGTTCACGCTTGTTATGATCTGGTCTAACGAAAAAGAGAAAAACATTT-AACAATGTA 1248
Query 1332 ATTTTGTTTCA 1342
|||| |||||
Sbjct 1249 ATTTAATTTCA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5