BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22850.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492585 jgi|Araly1|492585|fgenesh2_kg.7__2018__AT4G22850.1 1648 0.0
Ahg490019 jgi|Araly1|490019|fgenesh2_kg.6__3153__AT4G12000.1 514 7e-145
> Ahg492585 jgi|Araly1|492585|fgenesh2_kg.7__2018__AT4G22850.1
Length=1173
Score = 1648 bits (892), Expect = 0.0
Identities = 1092/1184 (92%), Gaps = 32/1184 (3%)
Strand=Plus/Plus
Query 1 ACAAATCAAGGAGAAAACTTCCACAAA-TTGTCTCTCTTTCTTTCCTACACACCAATTTG 59
||||||| ||||||||||||||||||| ||| |||||||| ||||| |||||||||||||
Sbjct 1 ACAAATCGAGGAGAAAACTTCCACAAATTTG-CTCTCTTTGTTTCCCACACACCAATTTG 59
Query 60 -TTTTGTGATTCTTTCGATTGCATTCTTCTTTTTCGAATTCCCGATCACTGGATTTTCCC 118
|||| || || ||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 60 TTTTTTTGTTTGGTTCGATTGCATTCATCTTTTTCGAATTTCCGATCACTGGATTTTCCC 119
Query 119 GTTTAACCGG-AAAATCCAGTGGATTAGATTTTACCCAGTGTTATCT-TTT-TG-----G 170
|||||| ||| ||||||||||| ||||| |||| | ||||||||||| ||| || |
Sbjct 120 GTTTAATCGGAAAAATCCAGTGTATTAGGTTTTGCTCAGTGTTATCTCTTTCTGTTTCTG 179
Query 171 -ATTGGATTCGATGACTGTTACGGAGGACGAAAAACCGGTTCTTGAGCTGCTGGTGAGAG 229
|||| |||||||||||| | ||||||| ||||| |||||||||||||||| ||||||||
Sbjct 180 AATTGCATTCGATGACTGCTCCGGAGGATGAAAAGCCGGTTCTTGAGCTGCGGGTGAGAG 239
Query 230 TTG-A-A-GACG---ACGATGAG--AAAGGG-CCTTATGTGAAATTGAGTGAGGTTTTAG 280
| | | | |||| |||||||| |||||| |||||||||||||| ||||||| |||||
Sbjct 240 TCGAAGACGACGACAACGATGAGAAAAAGGGTCCTTATGTGAAATTAAGTGAGGGTTTAG 299
Query 281 AGAAAGGTCAAGAATCAGAGCAGGAGAAGGAAGAAGAAAAGACTGATTCGTCGCGGTTTT 340
|| | || || || || || |||| ||||||||||||| |||||||||||||||||
Sbjct 300 AG--A----AA-AACCA-AGAAGAAGAA-GAAGAAGAAAAGATTGATTCGTCGCGGTTTT 350
Query 341 GGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTGTTGTGGGTT 400
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 351 GGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTATTGTGGGTT 410
Query 401 ACATTTGGATCGGTCCATTGATCATGGATAAGGAGCTTATACCGCTTATACAATGGGAGA 460
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 411 ACATATGGATCGGTCCATTGATCATGGATAAGGAGCTTATCCCGCTTATACAATGGGAGA 470
Query 461 TACGAACTTTTACACATCCTGTGTGTGGTCTTCTTGTTTTTGCATCAGTGGCGATATTTC 520
|| |||||||||||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct 471 TAAGAACTTTTACACATCCTGTGTGCGGTCTTCTTGTCTTTGCGTCCGTGGCAATATTTC 530
Query 521 CAACTATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTTTGGTTATG 580
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CGACTATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTTTGGTTATG 590
Query 581 GCTATGGCTTTCTACTTATTATCTCAGCTGCAGCTGTTGGTGTTTCGCTACCTTACTTTA 640
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 591 GCTATGGGTTTCTACTCATTATCTCAGCTGCAGCTGTTGGTGTATCGCTACCTTACTTTA 650
Query 641 TTGGACAACTCTTCTGCCACAAAATTCAAGGATGGCTAGAAAGATATCCTGATCAAGCAG 700
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 651 TTGGACAACTTTTCTGCCACAAAATTCAAGGATGGTTAGAAAGATATCCTGACCAAGCAG 710
Query 701 CCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTCTATTAGTAACCTTAA 760
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 CCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTCGATTAGTAACCTTAA 770
Query 761 TCCGGATTTCTCCATTCCCTTACATTCTTTATAACTACTGTTCTGTAGCAACTCGTGTTA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TCCGGATTTCTCCATTCCCTTACATTCTTTATAACTACTGTTCTGTAGCAACTCGTGTTA 830
Query 821 AGTATGGTCCTTACATCACGGGCTCTCTCTTAGGCATGGTGCCTGAGGTTTTTGTCGCAA 880
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 831 AGTATGGTCCTTACATCACAGGCTCTCTCTTAGGCATGGTTCCTGAGGTATTTGTCGCAA 890
Query 881 TCTACACAGGGATACTTGTAAGGACATTAGCAGAAGCATCTTCTGCAGAAGAACAGGGTC 940
||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 891 TCTACACAGGGATTCTTGTAAGGACTTTAGCAGAAGCATCTTCTGCAGAAAAACAGGGTC 950
Query 941 TCTCGGTAACACAGGTGATTCTCAACATTCTCGGCTTTTTAGCAACAGTGGCTACAACGA 1000
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 951 TCTCGGTTACACAGGTTATTCTCAACATTCTCGGCTTTTTAGCAACAGTGGCTACAACAA 1010
Query 1001 TTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACGATGAAGAAAGAGGACGAAGCAT 1060
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||
Sbjct 1011 TTCTCATCACAAAGTATGCGAAAAGACAGCTGGAGACTATGAAGAAAGAAGAGGAAGTAT 1070
Query 1061 TGTTGCAGTAAAACTGTAAAACCACGTGACAAACTCTGAGCTGCTTTTGTCTCTCTGCTA 1120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1071 TGTTGCAGTAAAACTGTAAAACCACGTGACAAACTCTGAGCTTCTTTTGTCTCTCTGCT- 1129
Query 1121 CTTT-ATCTGAAACACCCCTTGTCTTCTTACACAGTACAGGTCT 1163
|||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 1130 CTTTTATCTGAAACATCTCTTGTCTTCTTACACAGTACAGGTCT 1173
> Ahg490019 jgi|Araly1|490019|fgenesh2_kg.6__3153__AT4G12000.1
Length=1221
Score = 514 bits (278), Expect = 7e-145
Identities = 597/747 (80%), Gaps = 38/747 (5%)
Strand=Plus/Plus
Query 338 TTTGGTTTTGGGTCAAGCTTTCTCTTTTATTCGCCTTTCTTGCTGCATTGGCTGTTG-TG 396
||||||||||| |||||||| |||||| || | ||||| |||| |||| | | | |
Sbjct 258 TTTGGTTTTGGATCAAGCTTGGTCTTTTCTTAACATTTCTAACTGCTTTGGGTCTCGCT- 316
Query 397 GGTTACATTTGGATCGGTCCATTGATCATGGATAAGGAGCTTATACCGCTTA-TACAATG 455
||||||| ||| ||| ||| || ||||||||||||||||| || || || | || ||||
Sbjct 317 GGTTACAAATGGCTCGCTCCTTTAATCATGGATAAGGAGCTAATCCCTCTCATTA-AATG 375
Query 456 GGAGATACGA-ACTTTTACACATCCTGTGTGTGGTCTTCTTGTTTTTGCATCAGTGGCGA 514
|||||| || || |||||||| || ||||| ||| ||||||| |||||||||||| | |
Sbjct 376 GGAGAT-GGAGACATTTACACACCCGGTGTGCGGTATTCTTGTGTTTGCATCAGTGTC-A 433
Query 515 -TATTTCCAACT-ATACTTCTTCCATCTACACCATCAATGTGGATTGCTGGGATGACTTT 572
|| |||| | |||||| ||||| |||| || ||||||||| | |||||||| || ||
Sbjct 434 TTA-TTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGATTACATT 492
Query 573 TGGTTATGGCTATGGCTTTCTACTTA-T-TATCTCAGCTGCAGCTGTTGGTGTTTCGCTA 630
||||||| ||||||| |||| |||| | | || |||||| |||| |||||||||| ||
Sbjct 493 TGGTTATTTCTATGGCCTTCTCCTTACTCT-TC-CAGCTGTAGCTATTGGTGTTTCACTT 550
Query 631 CCTTACTTTATTGGAC-AACTCTT-CTGCCACAAAATTCAAGGATGGCTAGAAAGATATC 688
|||||||| || | | | ||||| || | ||||||||||||| ||| ||||||||||||
Sbjct 551 CCTTACTTCATCAG-CTATCTCTTCCT-CAACAAAATTCAAGGTTGGTTAGAAAGATATC 608
Query 689 CTGATCAAGCAGCCGTATTAAGAGCTGCTGGTGAAGGGAATTGGCTTCACCAATTTCTAT 748
| |||||||| || | || ||||||||||||| ||| | |||| ||||||| |||| |
Sbjct 609 CAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCACCAGTTTC-GT 667
Query 749 -TAGTAACCTTAATCCGGATTTCTCCATTCCCTTA-CATTCTTTATAACTACTGTTCTGT 806
|||||||||||||||||||||||||||||||| | | |||||||||||||| ||||
Sbjct 668 GCAGTAACCTTAATCCGGATTTCTCCATTCCCTTTTCCT-CTTTATAACTACTGCGCTGT 726
Query 807 AGCAACTCGTGTTAAGTAT-GGTCCTTACATCACGGGCTCTCTCTTAGGCATGGTGCCTG 865
||||||||||| |||| | ||||||||||| | ||||||||| ||||||||| ||| |
Sbjct 727 TGCAACTCGTGTAAAGT-TCGGTCCTTACATGGCTGGCTCTCTCGTAGGCATGGCGCCAG 785
Query 866 AGGTTTT-TGTCGCAATCTACACAGGGATACTTGTAAGGACATTAGCAGAAGCATCTTCT 924
|| |||| | ||||||| || |||||||| ||| ||||| |||| | ||| ||||| ||
Sbjct 786 AGATTTTCT-TCGCAATTTATACAGGGATTCTTATAAGGGCATTGGTAGATGCATCCACT 844
Query 925 GCAGAAGAACAGGGTCTCTCGGTAACA-CAGGT-GATTCTCAACATTCTCGGCTTTT-TA 981
|| ||| || ||||||||||| | | ||| | | ||||||||||||| || |||| ||
Sbjct 845 GCGGAACAAGAGGGTCTCTCGATT-CTTCAGATTG-TTCTCAACATTCTTGG-TTTTGTA 901
Query 982 GCAACAGTGGCT-ACAAC-GATTCTCATCACAAAGTATGCGAAAAGACAGCTGGA-GACG 1038
||||| || | | ||||| | |||| ||||| |||||||||||||||||||| || |
Sbjct 902 GCAACTGTTG-TGACAACTG-TTCTGATCACTAAGTATGCGAAAAGACAGCTTGAAGTT- 958
Query 1039 ATGAAGAAAGAGGACGAAGCATTGTTG 1065
|||||||| ||| | ||||| ||||||
Sbjct 959 ATGAAGAAGGAGAAGGAAGCTTTGTTG 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5