BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22860.1
Length=2222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492583 jgi|Araly1|492583|fgenesh2_kg.7__2016__AT4G22860.1 2944 0.0
> Ahg492583 jgi|Araly1|492583|fgenesh2_kg.7__2016__AT4G22860.1
Length=2140
Score = 2944 bits (1594), Expect = 0.0
Identities = 2006/2191 (92%), Gaps = 83/2191 (4%)
Strand=Plus/Plus
Query 38 TGATATTAAATAATAATATATATTCCATTTTGTCGCATAAACaaaaaaaTCTCTGAAACA 97
||||||||||| | ||||| | |||||||||||||| |||||| ||||||||||||||||
Sbjct 26 TGATATTAAAT-A-AATAT-T-TTCCATTTTGTCGC-TAAACAGAAAAATCTCTGAAACA 80
Query 98 GCGAAATTTGTGCCGtttttttCCTTTCCTGCCTTGTGCTTCTGTTTCTGCTTCTGCTTC 157
|||||||||||||||||| |||||||||||||||| ||| || ||||| |||||||
Sbjct 81 GCGAAATTTGTGCCGTTTATTTCCTTTCCTGCCTTCTGC-TC-----CTGCTCCTGCTTC 134
Query 158 CTCTTCATCAGACCCAATGAATCAGAGATTCTTCTGAGAAAATTAGGGTTTTGTCTCCTC 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 135 TTCTTCATCAGACCCAATGAATCAGAGATTCTTCTGAGAAAATTAGGGTTTTGTCTAGTC 194
Query 218 AATTTCATTTGGTAAACTTCAGGTATTTTGCAAAACCGATCAGTGATTTTCTTCG-GTTA 276
||||||||||| |||||||||||| |||| || |||||||||||||||||||||| |||
Sbjct 195 AATTTCATTTGCTAAACTTCAGGT-TTTTCCAGAACCGATCAGTGATTTTCTTCGCTTTA 253
Query 277 GTTGCATTTCCCCaagaaagaaaagagagaaagagattgtggaggttttagagagagcga 336
||||||||| ||| |||||| ||||||||||| ||| ||||||| |
Sbjct 254 GTTGCATTTTCCC--------------AGAAAGTGATTGTGGAGG-TTT-GAGAGAGATA 297
Query 337 gcgaaaatggagaTGGATGAAGATATGGAAATCGAGCCAATGGTGTTTGAGGTTAAAGAG 396
| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 GAG-AAATGGAGATGGATGAAGATATGGAAATCGAGTCAATGGTGTTTGAGGTTAAAGAG 356
Query 397 ATCGATCTGGAGTACGAATTTGATGCGGCGAGGTGGTACGATTTTACTCGGGAAGAGTTA 456
|||||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 357 ATCGATTTGGAGTATGAATTTGATGCGGCGAGGTGGTACGATTTTACTCGAGAGGAGTTA 416
Query 457 CCGGAGGAGTCTCAAGCCGCTGAGTTCTGGTTTCACTCTGCTCCGTCGTACGCTCCTTCT 516
|||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 417 CCGGCGGAGTCTCAAGCCGCTGAGTTCTGGTTTCATTCTGCTCCGTCGTACGCGCCTTCT 476
Query 517 CCTTTTGTAACAAAACTGTTACTAAGAGAGGAGGTTTATGATGACAAGACGGAGGCATCT 576
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 477 CCTTTTGTAACAAAACTGTTACTTAGAGAGGAGGTTTATGATGACAAGACTGAGGCATCT 536
Query 577 ACGAGATCAGAGGATGAGGAAGTCGTTGCAGATGTTTGTGATAAGTATAAAGGAACCTTT 636
|||||||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 537 ACGAGATCAGAGGAGGAGGAACTCGCAGCAGATGTTTGTGATAAGTATAAAGGAATCTTT 596
Query 637 CAGCAACCAAATCATTTAGCCACAGATTTTAATAAGACAGGAAGTAGAATGCGTTCTGGG 696
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 597 CAGCAACCAAATCATTTAGCTTCAGATTTGAATAAGACAGGAAGTAGAATGCGTTCTGGG 656
Query 697 ATTTTTTCCTCCCAACAACAACAAGGTTGTAATTTGAAGAAAGTTCCAAATCAGCCCATA 756
|||||||||| | |||||| || |||||||||||||||||||||||||||| |||
Sbjct 657 ATTTTTTCCT-----C-TCAACAATGTAGTAATTTGAAGAAAGTTCCAAATCAGCCTATA 710
Query 757 TGGAAAGGGCCGACGGTTAGCAATCACAAACACACTGATAAACCAAAATTCCGAGCTAAG 816
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGGAAAGGGCCGACGGTGAGCAATCACAAACACACTGATAAACCAAAATTCCGAGCTAAG 770
Query 817 TCAAGCATCAGACCAACTCCAAGGAGCTCAACATTAATGAGACCTACTGCTAGCCAATTA 876
|| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 771 TCCAGTATCAGACCAACTCCAAGGAGCTCAACGTTAATGAGACCTACTGCTAGCCAGTTA 830
Query 877 GCAAAACAAAATAATGCCAGTAAATTCCATATGCAAGTGGATCAAAGTCATGATAAAGGA 936
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GCAAAACAAAATATTGCCAGTAAATTCCATATGCAAGTGGATCAAAGTCATGATAAAGGA 890
Query 937 AGTTGTGGGACATCTGGGACTGAAGTTCAAGCGTCTAAAAGACAGAAGCTTGATGGAGGT 996
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGTTGTGGGACATCTGGAACCGAAGTTCAAGCGTCTAAAAGACAGAAGCTTGATGGAGGT 950
Query 997 CTTCTTCGTAAGGTTGCTGATACAAAGCAGGAAATGAGTTTTGTCCACAAGATCCCCAAG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 951 CTTCTTCGTAAGGTTGCTGATACAAAGCAGGAAATGAGTTTTGTCCACAAGATACCCAAG 1010
Query 1057 AAGGATACAACTCTTGATAAAAACGCT-CAACATGCCAGGACAAAGATTACTATCCCACA 1115
||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||||
Sbjct 1011 AAGGATACAACTCTTGATAGAAAC-TTACAACATGTCAGGACAAAGATTACTATCCCACA 1069
Query 1116 GGAGCCTGATTTTGCTACATCACAGAGGGCTCACAGGATACGGCACAAGAATGATGCGAA 1175
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1070 AGAGCCTGATTTTGCTACGTCACAGAGGGCTCACAGGATACGGCACAAGAATGACGCGAA 1129
Query 1176 GTTAGAACAAGA-GCAACCAGCTGTATATAGATTCAAAGCACGTCCATTTAACCGAAAGA 1234
||||||||| || ||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1130 GTTAGAACAGGACTCAA-CAACTGTATATAGATTCAAAGCACGCCCATTTAACCGAAAGA 1188
Query 1235 TATTTGATGCTCCTTCATTGCCCATCCGGAAAAAGAGCACTCCGAAACTACCAGAATTCC 1294
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1189 TATTTGAGGCTCCCTCATTGCCCATCCGGAAAAAGAGCACTCCGAAACTACCAGAATTTC 1248
Query 1295 AAGAATTTCATTTGAAGACTTCAGAAAGGGCTATGCAACATTCATCAGCAGTAACAACAC 1354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AAGAATTTCATTTGAAGACTTCAGAAAGGGCTATGCAACATTCATCAGCAGTAACAACAA 1308
Query 1355 GGTCTCATGCGTATAAGGAGTCAGACAAATCTATTATAACTGATATGCTTGACGGTGATA 1414
| |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1309 GTTCTCATGCATATAAGGAGTTAGACAAATCTATTCTAACTGATATGCTTGACGGTGATA 1368
Query 1415 AC-AGAGAAAGTAGGAGACCAAGCGGTATGGATATATCTAAGCATGATGTCTCAGAAGGA 1473
|| || ||||||| ||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 1369 ACAAG-GAAAGTAAGAGACCAAGCGTTATGGATATATCAAAACATGATGTCTCAGAAGGA 1427
Query 1474 AGTCACGTTTTTAAAGCTCGTCCTCTGAACAAGAAGATACTTTCAAGCAGAGGAGACATG 1533
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1428 AGTCACGTTTTTAAAGCTCGTCCTTTGAACAAGAAGATACTTTCAAGCAGAGGAGACATG 1487
Query 1534 GGCATTTTCAAAAATAGCAAGCGAGAAACAACAGTACCTTTGGAGTTTAGTTTTCATTCG 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GGCATTTTCAAAAATAGCAAGCGAGAAACAACAGTACCTTTGGAGTTTAGTTTTCATTCG 1547
Query 1594 GAAAAGAGAGTTCAACCAGATTTACCGACAGACCTTTTCAGCAAGCTCTCCATAAAATCC 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1548 GAAAAGAGAGTTCAACCAGATTTACCGACAGACCTTTTCAGCAAGCTCTCCATCAAATCC 1607
Query 1654 GAGATACAGCCAAACGATGGATCTCGCACAAGATTATTTCAACCAAAGGTCTCAAAGGAA 1713
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1608 GAGCTCCAGCCAAACGATGGATCTCGCACAAGATTATTTCAACCAAAGGTGTCAAAGGAA 1667
Query 1714 AATAGAATAAACTCTTTCCAAGCAAGGAATGAGGTAACAAGAATGGCAGCGGCAAAACCA 1773
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1668 AATAGAATGAACTCTTTCCAAGCAAGGAATGAGGTACCAAGATTGGCAGCGGTAAAACCA 1727
Query 1774 GTCTCTTCAGCTGGACAACAAATGCAATTTGGTAATAGTGGAATAACTCCTGAAACAAAC 1833
|||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 1728 GTCTCTTCAGCTGGACAACAGGTACAATTTGGTAATAGTGGAATAACTCCGGAAACAAAC 1787
Query 1834 CAGCAATGGACAGCTAGGAGGAACTTAGGCATTCGCTGATGGAT-CAAAACGCATTTGTA 1892
||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||||
Sbjct 1788 CAGCAATGGACAGCTAGGAGGTACTTAGGCATTCGCTGATGG-TACAGAACGCATTTGTA 1846
Query 1893 GTATCTGGATTCATGTCCTTATGTACATTCAGATTTGGTTCTCTTCTCAGTCTGATCATG 1952
||||||||| |||| ||||||||| | | | | ||| || ||
Sbjct 1847 GTATCTGGAATCATCTCCTTATGT--A--C--A-----------T-TCA----GA--AT- 1881
Query 1953 TGGTATAACTCCTCCAACGC-AAAGCTAACATTTTGAAATCCAAAAGAAGCAGAACAATT 2011
|||| | || || |||| | ||||||||||||||||||||| ||||||| ||| |||||
Sbjct 1882 TGGT-T--CTTCTTCAAC-CTAAAGCTAACATTTTGAAATCC-AAAGAAGTAGACCAATT 1936
Query 2012 CATCTTGAGGACAAGGGAAGAAAGGAGAAAGCAAAAGCAAACCACATTCTTCAGTTTCTC 2071
| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1937 CGTCTTGAGGACAAAGGAAGAAAGGAGAAAGC-AAAGCAAACCGCATTCTTCAGTTTCTC 1995
Query 2072 ATTATATTAGCCATGTATTGCATCTCCCTCTCTCTTTTGCTTTCTTCGGTATCTGTTTTC 2131
|| |||| ||||| || ||||||| | ||||| |||||||||||||| ||||||||||
Sbjct 1996 ATAATATGAGCCACATAATGCATCT--C-CTCTC-TTTGCTTTCTTCGGCATCTGTTTTC 2051
Query 2132 TTACATTTAGTATCATAAAACGGATAAACAGAAAATGTAAATCAGAAATACTTTCAAGTT 2191
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2052 TTACA-TTAGTATCATAAAAAGGAAAAACAGAAAATGTAAATCAGAAATACTTTCAAGTT 2110
Query 2192 CTCAATACA-ACATGTGGTTCATAGATCTAC 2221
|| |||||| | |||||||||||||||||||
Sbjct 2111 CTTAATACATA-ATGTGGTTCATAGATCTAC 2140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83646178020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5