BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22880.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492580 jgi|Araly1|492580|fgenesh2_kg.7__2013__AT4G22880.1 1740 0.0
> Ahg492580 jgi|Araly1|492580|fgenesh2_kg.7__2013__AT4G22880.1
Length=1140
Score = 1740 bits (942), Expect = 0.0
Identities = 1079/1145 (94%), Gaps = 10/1145 (1%)
Strand=Plus/Plus
Query 1 ACTTGCAACCAATTACAAAAA-AGAGTCTTTAAAC--AGAAGACTAAAGAAGATGGTTGC 57
||||||||||||||||||||| | || |||||||| ||||||| |||||||||||||||
Sbjct 1 ACTTGCAACCAATTACAAAAATA-AG-CTTTAAACGAAGAAGAC-AAAGAAGATGGTTGC 57
Query 58 GGTTGAAAGAGTTGAGAGTCTAGCAAAAAGCGGAATCATATCGATTCCAAAAGAATATAT 117
||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| || ||
Sbjct 58 GGTTGAAAGAGTTGAGAGTTTAGCAAAGAGCGGAATCATATCCATTCCAAAAGAGTACAT 117
Query 118 TCGTCCAAAAGAAGAGCTCGAGAGCATCAACGATGTTTTCCTAGAAGAGAAGAAAGAAGA 177
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 118 TCGTCCCAAAGAAGAGCTCGAGAGCATCAACGACGTTTTCCTAGAAGCGAAGAAAGAAGA 177
Query 178 CGGTCCTCAAGTTCCCACAATCGATCTA-AAGAACATCGAGTCAGACGATGAAAAGATCC 236
||||||||||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct 178 CGGTCCTCAAGTTCCTACAATCGATCTACAA-AACATCGAGTCAGAAGATGAAAAGATCC 236
Query 237 GTGAGAATTGTATTGAGGAGCTGAAAAAGGCATCTTTGGATTGGGGAGTGATGCATTTGA 296
|||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 237 GTGAGACTTGCATTGAGGAACTGAAAAAGGCAGCTTTGGATTGGGGAGTGATGCATTTGA 296
Query 297 TCAACCATGGAATACCAGCTGATCTAATGGAGCGTGTCAAGAAAGCCGGAGAAGAGTTTT 356
|||||||||||||| | | |||||||||||||||||| ||||||||||| ||||||||||
Sbjct 297 TCAACCATGGAATATCTGTTGATCTAATGGAGCGTGTGAAGAAAGCCGGGGAAGAGTTTT 356
Query 357 TCAGTTTGTCTGTGGAAGAGAAGGAGAAGTATGCAAACGATCAAGCCACTGGAAAGATTC 416
|| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 357 TCGGTTTGTCCGTGGAAGAGAAGGAGAAGTATGCGAACGATCAAGCCACAGGAAAAATTC 416
Query 417 AAGGCTATGGAAGTAAATTGGCTAACAACGCGAGTGGACAATTGGAATGGGAAGATTACT 476
|||| ||||||||||| || ||||||||||| | |||||||||||||||||||||||||
Sbjct 417 AAGGGTATGGAAGTAAGTTAGCTAACAACGCTTGCGGACAATTGGAATGGGAAGATTACT 476
Query 477 TCTTTCATCTTGCGTATCCTGAAGAGAAGAGAGATCTATCAATTTGGCCTAAGACACCAA 536
|||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 477 TCTTTCATCTTGTGTATCCTGAAGACAAGAGAGATCTATCACTTTGGCCTACGACACCAA 536
Query 537 GTGATTACATAGAAGCAACGAGTGAGTACGCGAAGTGTCTTCGTTTGCTAGCGACTAAAG 596
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 537 GTGATTACATAGAAGCAACGAGTGAGTACGCGAAGTGTCTTCGTTTGTTAGCAACAAAAG 596
Query 597 TCTTCAAGGCTCTCTCTGTCGGTCTAGGTTTAGAGCCTGACCGTCTAGAGAAAGAAGTTG 656
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 597 TCTTCAAGGCTCTCTCTATTGGTCTAGGCTTAGAGCCTGACCGTCTAGAGAAAGAAGTTG 656
Query 657 GTGGTTTAGAAGAGCTTCTTCTACAAATGAAGATAAATTACTATCCAAAATGTCCTCAGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTGGTTTAGAAGAGCTTCTTCTACAAATGAAGATAAATTACTATCCAAAATGTCCTCAGC 716
Query 717 CTGAGCTAGCACTCGGTGTGGAAGCTCACACCGATGTAAGCGCTTTAACTTTCATTCTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 CTGAGCTAGCACTCGGTGTGGAAGCTCACACCGATGTAAGCGCTTTAACCTTCATTCTAC 776
Query 777 ACAACATGGTTCCGGGTTTGCAGCTTTTCTACGAGGGCAAATGGGTCACTGCAAAATGTG 836
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 777 ACAACATGGTTCCCGGTTTGCAGCTATTCTACGAGGGAAAATGGGTCACTGCAAAATGTG 836
Query 837 TTCCTGATTCGATTGTGATGCACATTGGGGATACTTTGGAGATTCTTAGTAATGGGAAGT 896
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 837 TTCCTGATTCGATTGTGATGCACATTGGAGATACTTTAGAGATTCTTAGTAATGGGAAGT 896
Query 897 ATAAGAGTATACTTCATCGTGGGTTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTG 956
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATAAGAGTATACTTCATCGCGGGTTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTG 956
Query 957 TGTTTTGTGAACCCCCAAAGGATAAGATTGTTCTTAAGCCGTTGCCGGAGATGGTGAGTG 1016
|||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TGTTTTGTGAGCCACCAAAGGATAAGATTGTTCTTAAGCCGTTGCCGGAGACGGTGAGTG 1016
Query 1017 TTGAGTCTCCGGCTAAGTTTCCTCCACGGACTTTTGCTCAACATATTGAGCATAAGTTGT 1076
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1017 ATGAGTCTCCGGCTAAGTTTCCTCCAAGGACATTTGCTCAACATATTGAGCATAAGTTGT 1076
Query 1077 TTGGGAAGGAACAAGAGGAATTGGTATCCGAGAAAAATGA-TTAAGTTTCTGTGTTTACT 1135
|||||||||||||||||||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 1077 TTGGGAAGGAACAAGAGGAATTGGTATCTGAGAAAAA-GAATTAAGTTTGTGTGTTTAGT 1135
Query 1136 CTTAT 1140
|||||
Sbjct 1136 CTTAT 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5