BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22890.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492575 jgi|Araly1|492575|fgenesh2_kg.7__2008__AT4G22890.3 1851 0.0
Ahg490014 jgi|Araly1|490014|fgenesh2_kg.6__3148__AT4G11960.1 837 0.0
> Ahg492575 jgi|Araly1|492575|fgenesh2_kg.7__2008__AT4G22890.3
Length=1221
Score = 1851 bits (1002), Expect = 0.0
Identities = 1158/1229 (94%), Gaps = 28/1229 (2%)
Strand=Plus/Plus
Query 90 AACACATCTTCAACCACAGGTTCATACTTACTGaaaaaaacagaggaaaaaaaGGAGCTC 149
|||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1 AACATATCTTCAACCACAGGTTCATACTTACTG-AAAAAACAGAGG---AAAAGGAGCTC 56
Query 150 CCTTT-TCTA----TCTCTAAGGGAAAATGGGTAGCAAGATGTTGTTTAGTTTGACAAGT 204
| ||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 CTTTTCTCTATCTCTCTCTCAGGGAAAATGGGTAGCAAGATGTTGTTTAGTTTGACATGT 116
Query 205 CCTCGACTTTTCTCCGCCGTTTCTCGCAAACCTTCCTCTTCTTTCTCTCCTTCTCCTCCG 264
|||||||||||||||||||||||||||||| | || | | ||| || |||| |||||
Sbjct 117 CCTCGACTTTTCTCCGCCGTTTCTCGCAAA-C--CCAC--C--TCT-TCTTTCT-CTCCG 167
Query 265 TCGCCGTCTTCGAGGACTCAATGGACTCAGCTCAGCCCTGGAAAATCGATTTCTTTGAGA 324
| |||| ||||||||||| ||| ||||||||| ||||| |||||||||||| ||||||
Sbjct 168 T---CGTCGTCGAGGACTCAGTGGGCTCAGCTCACCCCTGCAAAATCGATTTCCTTGAGA 224
Query 325 AGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGGTCCAGTAGGAGGA 384
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 225 AGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGGTACAGGGGGAGGA 284
Query 385 GACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACA 444
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 285 GACAACGTCGATAGCAATGTTTTGCCTTATTGTAGCATCAACAAGGCTGAGAAGAAGACA 344
Query 445 ATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAATCTTTCTATTATGATGGCAAA 504
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 345 ATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGATGCAATCTTTCTATTACGATGGCAAA 404
Query 505 GCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGC 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGC 464
Query 565 AGTGTTGTGATGCTAAGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTT 624
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 465 AGTGTTGTCATGCTAAGTTCCGATGAACAAAGGTTCTTGGAAGCTTCCATGGCTTATGTT 524
Query 625 TCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGATT 684
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 525 TCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTGAAACTAAAGATT 584
Query 685 GATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGTGTAT 744
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GATGGTAGCGAAATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGTGTAT 644
Query 745 AGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTT 704
Query 805 GCTCTCGGACTCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATG 864
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 705 GCTCTCGGACTCTTTTTCTTCCTCGACGACATTACAGGTTTTGAGATCACATACATCATG 764
Query 865 GAGCTTCCAGAACCATACAGTTTCATATTCACTTGGTTCGCTGCTGTGCCTGTGATTGTA 924
|||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 765 GAGCTTTCGGAACCATACAGTTTCATATTCACGTGGTTCGCTGCCGTGCCTGTGATTGTA 824
Query 925 TATCTGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGGGTCCT 984
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 825 TATCTGGCTTTATCAATCACCAAACTGATCATCAAAGACTTCTTGATCTTGAAGGGTCCT 884
Query 985 TGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGC 1044
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGT 944
Query 1045 GGCGGCAAAACCAACACTGTCAAATGCACCAACTGCGGAACCGCGATGGTGTATGACTCG 1104
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 945 GGTGGCAAAACCAACGCTGTCAAATGCACCAACTGTGGAACCGCGATGGTGTATGACTCG 1004
Query 1105 GGTTCTAGGTTGATCACATTGCCAGAAGGAAGCCAAGCTTAAACCCTGTGAGCTAGATGA 1164
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1005 GGTTCTCGGTTGATCACATTGCCAGAAGGAAGCCAAGCTTGAACCCTGTGAG--A--TGA 1060
Query 1165 AGATGGGAAAAGAAGAATGGGTTTTGTCAGAAGCAAAATAGATTCGAAGTTAAATGTATA 1224
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1061 AGATGGAAAAAGAAGAATGGGCTTTGTCAGAAGCAAAATAGATTCGAAGTTAA-TGTATA 1119
Query 1225 TGTAAGATCTTCCATGTTAGCTCTCTCTCCTTCACATGTTTTCTGATTTGTAAGTATTGT 1284
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGTAAGATCTTGCATGTTAGCTCTCTCTCCTTCACATGTTTTCTGATTTGTAAGTATTGT 1179
Query 1285 GTGTAAGCAATAAGAGATATATAATATGA 1313
|| || |||||||||| |||| ||||||
Sbjct 1180 GTA-AA-CAATAAGAGACATATTATATGA 1206
> Ahg490014 jgi|Araly1|490014|fgenesh2_kg.6__3148__AT4G11960.1
Length=1157
Score = 837 bits (453), Expect = 0.0
Identities = 725/857 (85%), Gaps = 16/857 (2%)
Strand=Plus/Plus
Query 309 ATCGATTTCTTTGAGAAGAAGA-GTCTTCTTGTTGCCTGC-TAAAGCCACAACAGAGCAA 366
|||||||||| | ||||||||| || |||| ||||| | | |||| | || || |||
Sbjct 197 ATCGATTTCTCTCAGAAGAAGACTTC-TCTTATTGCC-CCTTCAAGCTTCTACTGATCAA 254
Query 367 TCAGGTCCA-GTAGGAGGAG-ACAACGTCGATAGCAATG-TTTTGCCCTATTGTAGCATC 423
|||||| || || || || | | || || ||| |||| | ||||||| ||||||||||||
Sbjct 255 TCAGGT-CAGGTTGGTGGGGAAGAA-GTTGATGGCAA-GATTTTGCCATATTGTAGCATC 311
Query 424 AACAAG-GCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCA 482
|||||| | |||||||| |||||| || |||||||||||||||||||||||||| ||||
Sbjct 312 AACAAGAG-TGAGAAGAGAACAATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCA 370
Query 483 ATCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGA 542
||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 371 ATCGTTCTATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGA 430
Query 543 AGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAGTTCCGATGAACAAAGATT-CT 601
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 431 AGAGTTGATGTGGGAAGGAAGCAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCT 490
Query 602 TGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATA 661
|| ||||||| ||||||||||| |||||||| |||||||||| ||||||||| |||||||
Sbjct 491 TG-AAGCTTCAATGGCTTATGTCTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATA 549
Query 662 AGCTCAAACTCAAACTAAAGATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCA 721
|||||||| | ||||||||||| || || || || |||||| | ||||||||||||||||
Sbjct 550 AGCTCAAATTGAAACTAAAGATGGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCA 609
Query 722 GTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGT 781
|||| |||||||||||||| || |||||||| || | ||||| ||||||||||| ||||
Sbjct 610 GTCTTCGTAGTAAAAAGGTTTACAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGT 669
Query 782 TGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTGGACGACATTACAG 841
||||||| || ||||| ||||||||||||||||| ||||||||||| || |||||||| |
Sbjct 670 TGAATGTACCTGCAACTGTTGTTGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGG 729
Query 842 GTTTTGAGATCACATACAT-CATGGAGCTTCCAGAACCATACAGTTTCATATTCACTTGG 900
||||||| ||||| ||| | | | |||||||| ||||||| ||||||||| ||||| |||
Sbjct 730 GTTTTGAAATCACGTACCTGC-TCGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGG 788
Query 901 TTCGCTGCTGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAATTGATCATCAAG 960
|| ||||| ||||||| ||||| |||||||| ||||| |||||||| | ||| ||||
Sbjct 789 TTTGCTGCGGTGCCTGCAATTGTCTATCTGGCGCTATCACTCACCAAACTCATCCTCAAA 848
Query 961 GACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTT 1020
|||||||||||||||||||| |||||||| || |||||||| || || |||||||||
Sbjct 849 GACTTCTTGATCTTGAAGGGCCCTTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTT 908
Query 1021 GGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAACTGC 1080
|||||||| || || ||||||| | || || ||||||| |||||||||| | |||
Sbjct 909 GGAACAATACTTTCCATCTCCAATGATGGTAACACCAACAATGTCAAATGCTCTGGCTGT 968
Query 1081 GGAACCGCGATGGTGTATGACTCGGGTTCTAGGTTGATCACATTGCCAGAAGGAAGCCAA 1140
||||| | |||| | |||||||| |||||| | ||||||||||| ||||||||| || ||
Sbjct 969 GGAACGGAGATGATCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAA 1028
Query 1141 GCTTAAACCCTGTGAGC 1157
||||||| ||| |||||
Sbjct 1029 GCTTAAAACCTATGAGC 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5