BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22900.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945829 jgi|Araly1|945829|scaffold_702058.1 1628 0.0
> Ahg945829 jgi|Araly1|945829|scaffold_702058.1
Length=1069
Score = 1628 bits (881), Expect = 0.0
Identities = 1019/1082 (94%), Gaps = 23/1082 (2%)
Strand=Plus/Plus
Query 25 TAGATTCTCTTGTTCCTCTTATGGATTCATTCTCTTTTTGTATCATCATCATGATACTTC 84
|||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1 TAGATTCTCTTGATCCTCTCATGGATTCATTCTCTTTTTGTATCATCATC---ATACTTC 57
Query 85 TC---TTATCATTCCACCAATCTAAGTCTCAATTGATTCAATCTACACATCTTCTTGATC 141
|| |||||||||||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 58 TCTTATTATCATTCCACCAATCTGAGTCTCAATCGATTCAATCTACACATCTCCTTGATC 117
Query 142 TCATGATCAGAGATTACACCATTAGAAACTTTAAGCTCAATTTCAACACAGGCGTCACTC 201
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 118 TCATGATTAGAGATTACACCATTAGAAACTTTAAGCTCAATCTCAACACAGGCATCACTC 177
Query 202 AGAAAATCTATCTCCCTTCTAATTTCTCTGGTATCGATATTGACACGGTCAAGTTAAGGT 261
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 AGAAAATCCATCTCCCTTCTAATTTCTCTGGTATCGACATTGACACGGTCAAGTTAAGGT 237
Query 262 GTGGGAGTTTGAGAAGATATGGCGCAAAAATTGGAGAGTTTCACATCGGTTCAGGCCTTA 321
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 238 GTGGGAGTTTGAGAAGATATGGAGCAAAAATTGGAGAGTTTCACATCGGTTCAGGCGTTA 297
Query 322 CGGTGGAGCCATGTCCGGAGAGAGTCATGCTAATTAGACAAAACTTTGGTTCGAATTGGT 381
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 298 CGGTGGAGCCATGTCCGGAGAGAGTCATGCTAATTAGACAAAACCTTGGTTTGAATTGGT 357
Query 382 CTTCAATCTACTCTACTGGTTATAACTTATCCGGTTACAATTACAAGCTCGTGTCACCGG 441
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 CCTCAATCTACTCTACTGGTTATAACTTATCCGGCTACAATTACAAGCTCGTGTCACCGG 417
Query 442 TTCTTGGTTTGTTGGCTTATAATGCTAACCCTGACGGTGTGGCCAGGAACCCTTACGAGG 501
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 418 TTCTTGGTTTATTGGCTTATAATGCTAACCCTGACGGTGTGGCCACGAATCCTTATGAGG 477
Query 502 TTAATGTTGTAGGTACCGATCAAAACCCAATCTTAATCGATTTCTTGATCAACAAGGCAA 561
|||| |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 478 TTAACGTTGTAGGTACCGATCAAAACCCAATTTTAGTCGATTTCTTGAGCAACAAGGCAA 537
Query 562 CTAATAACACTAGCCCTAACCCT------ACGAAGAAGAACTCGTCAGTCTTGTGTGCGT 615
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 538 CTAATAACACTAGCCCTAACCCTACGACGACGAAGAAGAACTCGTCAGTCTTGTGTGCGT 597
Query 616 GTTTTACAAGCAACAG-TAACACAACGTTTAGCGAGCAAGTCTCGCCGTATGTGTGTAAA 674
|||||||||| ||| | ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 598 GTTTTACAAGTAAC-GCTAACACAACGTTTAGTGAGCAAGTCTCGCCGTATGTATGTAAA 656
Query 675 GGTACAAGACAAGGGCATTACGCTCTCGTGATGAAGACAGAAGCTCAAAAAGATGATCAT 734
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGGACAAGACAAGGGCATTACGCTCTCGTGATGAAGACAGAAGCTCAAAAAGATGATCAT 716
Query 735 GAAGGTGGTGGTAGTAGTGGTGGAGTGGTGGCATCATCGACGGAGGTGAATGGTGGCAAC 794
| | |||||| | |||||||||||||| | |||||||||||| ||||||||||||||
Sbjct 717 G-A--CGGTGGT-G--GTGGTGGAGTGGTGACGTCATCGACGGAGATGAATGGTGGCAAC 770
Query 795 GGAGGAGGAAAGTTGAGCCGTTGGAAAGTGGCGGTGGGGAGTGTGATAGGGTCAGGGATT 854
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 771 GGAGGAGGAAAGTTGAGCCGGTGGAAAGTGGCGGTGGGGAGTGTGATTGGGTCAGGGATT 830
Query 855 GGAGCAATTCTGCTGGGAATGTTAGTGGTGGCGATGTTGGTgaaggggaagaagaaagca 914
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 831 GGAGCAATTCTGCTGGGAATGTTAGTGGTGGCGATGCTGGTGAAGGTGAAGAAGAAAGCA 890
Query 915 atgagagaagaaatggagagaagagcttatgaagaagaagCTCTTCAGGTGTCAATGGTG 974
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 891 ATGAGAGAAGAAATAGAGAGAAGAGCTTATGAAGAAGAAGCTCTTCAGGTTTCAATGGTG 950
Query 975 GGTCATGTTAGAGCTCCTACTGCTCCTGGAACTAGAACTCTTCCTAGAATTTCCGATGAT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 951 GGTCATGTTAGAGCTCCTACTGCTCCTGGAACTAGAACTCTTCCTAGAATTGCCGATGAT 1010
Query 1035 AGGTATAATAAAAACACTCATTTGAATAGTAATTATCCATAATTATCATTTGTTTTCTGA 1094
|||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AGGTATAA-AAA--CACTCATATGAATAGTAATTATCCATAATTATCATTTGTTTTCTGA 1067
Query 1095 TT 1096
||
Sbjct 1068 TT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5