BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G22910.1 Length=1866 Score E Sequences producing significant alignments: (Bits) Value Ahg945828 jgi|Araly1|945828|scaffold_702057.1 2252 0.0 Ahg943082 jgi|Araly1|943082|scaffold_603626.1 1122 0.0 > Ahg945828 jgi|Araly1|945828|scaffold_702057.1 Length=1471 Score = 2252 bits (1219), Expect = 0.0 Identities = 1408/1494 (94%), Gaps = 34/1494 (2%) Strand=Plus/Plus Query 44 gagtcaacaaaaaaaaaaaaCCAATGGAAGAAGAAGATCCTA-CAGCAAGCAATGTGATA 102 |||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||||| Sbjct 1 GAGTCAAC--AAAAAAAAAACC-ATGGAAGAAGAAGATCCTAGC-GCAAGCAATGTGATA 56 Query 103 ACGAATTCGAATTCTTCATCTA-TGAGAAACCTATCGCCGGCGATGAATACTCCGGTGGT 161 |||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||||| Sbjct 57 ACGAATTCGAATTCTTCATC-ACAGAGAAATCTATCGCCGTCGATGAATACTCCGGTGGT 115 Query 162 TTCACTTGAGtcacgaatcaatcgattaatcaatgctaatcaatctcaatcaccatcacc 221 |||||||||||||||||||||||||||||||||||| | || ||||| | ||| Sbjct 116 TTCACTTGAGTCACGAATCAATCGATTAATCAATGC---T-AA--TCAAT---C-TCA-- 163 Query 222 atcatcactatcaaGGTCTATATACTCTGATAGATTTATCCCCAGTAGATCCGGATCCAA 281 |||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 164 ATCA-C-C-ATCAAGGTCTATATACTCTGATAGATTTATTCCCAGTAGATCCGGATCCAA 220 Query 282 TTTCGCTCTTTTCGATCTATCTCCTTCTCCTAGTAAAGATGGTAAGGAAGATGGAGCTGG 341 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 221 TTTCGCTCTCTTCGATCTATCTCCTTCTCCGAGTAAAGATGGTAAGGAAGATGGAGCTGG 280 Query 342 CTCTTACGCTACTCTGTTGCGTGCGGCGATGTTTGGTCCTGAGACGCCGGAGAAGAGAGA 401 ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 281 CTCTTACGCTACTCTGTTGCGTGCGGCCATGTTTGGACCAGAGACGCCGGAGAAGAGAGA 340 Query 402 TATTACTGGGTTTTCTTCTTCCAGGAATATTTTTAGGTTTAAGACGGAGACTCATCGGTC 461 |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 341 TATTACTGGGTTCTCTTCTTCCAGGAATATTTTCAGGTTTAAGACGGAGACGCATCGGTC 400 Query 462 TTTGAATTCGTTTTCTCCTTTTGGTGTTGATGATGATTCTCCTGGTGTTTCTCATAGTGG 521 ||||||||| |||||||||||||||| | |||||||||||||||||||| ||||| | Sbjct 401 TTTGAATTCTTTTTCTCCTTTTGGTG-T--TGATGATTCTCCTGGTGTTTGTCATA---G 454 Query 522 TCCTGTTAAAGCTCCCAGGAAAGTGCCGCGATCGCCGTATAAGGTATTGGATGCACCGGC 581 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 455 TCCTGTTAAAGCTCCCAGGAAAGTGCCGCGATCGCCGTATAAAGTATTGGATGCACCGGC 514 Query 582 CTTGCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGT 641 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 515 CTTGCAAGATGATTTTTATCTGAATCTCGTGGATTGGTCTGCACAAAATGTTCTTGCAGT 574 Query 642 GGGACTAGGGAACTGTGTGTATTTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATG 701 |||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 575 GGGATTAGGGAACTGCGTTTATTTATGGAATGCTTGTAGCAGCAAGGTAACTAAGTTATG 634 Query 702 TGATCTCGGAGCTGAGGATAGTGTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCT 761 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 635 TGATCTTGGAGCTGAGGATAGTGTTTGCTCTGTGGGTTGGGCGTTACGTGGAACTCATCT 694 Query 762 GGCTGTTGGAACTAGTACCGGGAAAGTTCAGATATGGGATGCGTCACGCTGCAAGAGAAC 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 695 GGCTGTTGGAACTAGTACCGGGAAAGTTCAGATATGGGATGCGTCACGCTGCAAAAGAAC 754 Query 822 AAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCT 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 AAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCT 814 Query 882 GTCATCTGGTAGCAGAGACAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCA 941 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 815 GTCATCTGGTAGCAGAGATAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCA 874 Query 942 TGTCAGTAAA-TTGGCAGGTCATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACA 1000 |||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 875 TGTCAGTAAACTTA-CAGGTCACAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACA 933 Query 1001 ACAGAGAGCTAGCATCTGGTGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAA 1060 |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 934 ACAGGGAGTTAGCATCTGGTGGAAACGACAATCGGCTTTTTGTATGGAACCAACATTCAA 993 Query 1061 CACAACCGGTTTTGAAATATAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTC 1120 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 994 CACAACCGGTTTTGAAATATAGTGAACACACTGCAGCGGTGAAAGCCATTGCTTGGTCTC 1053 Query 1121 CTCATGTTCATGGGCTTCTTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTT 1180 |||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||| Sbjct 1054 CTCATGTTCATGGGCTTCTTGCCTCTGGTGGGGGAACTGCTGATAGGTGCATACGTTTTT 1113 Query 1181 GGAATACAACCACGAATACTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATC 1240 |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1114 GGAATACAACGACGAACACTCATTTAAGCTCCATAGATACTTGCAGTCAGGTATGCAATC 1173 Query 1241 TAGCTTGGTCTAAGAACGTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAA 1300 | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1174 TCGCTTGGTCTAAGAACGTAAACGAGCTAGTTAGCACACATGGATACTCTCAGAACCAAA 1233 Query 1301 TCATTGTCTGGAAATACCCAACCATGTCCAAAATTGCTACTCTAACCGGTCACACATACC 1360 ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| Sbjct 1234 TCATTGTCTGGAAATACCCAACCATGTCCAAAATTGCAACTCTGACTGGTCACACATACC 1293 Query 1361 GAGTCTTATACCTTGCGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATG 1420 | ||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1294 GCGTCCTGTACCTTGCGGTTTCACCCGATGGACAGACGATTGTTACCGGAGCAGGAGATG 1353 Query 1421 AAACCTTAAGGTTCTGGAATGT-TTTCCCTTCCCCAAAATCTCAGAACACGGATAGTGAA 1479 |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 1354 AAACCTTACGGTTCTGGAATGTGTTTCC-TTCCCCAAAATCTCAGAACACGGATACTGAA 1412 Query 1480 ATCGGGTCGTCTTTCTTTGGTAGAACAACAATTCGGTGAGAAG-TTACTTTCAA 1532 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1413 ATCGGGTCGTCTTTCTTTGGTAGAACAACAATTCGGTGA-AAGGTTACTTTCAA 1465 > Ahg943082 jgi|Araly1|943082|scaffold_603626.1 Length=1465 Score = 1122 bits (607), Expect = 0.0 Identities = 1151/1406 (82%), Gaps = 67/1406 (5%) Strand=Plus/Plus Query 139 CCGGCGATGAATAC-TCCGGTGGTTTCACTTGAGtcacgaatcaatcgattaatcaatgc 197 ||| |||||||| | ||| ||| |||||||||||||||||||| || ||||| || | Sbjct 81 CCGTCGATGAAT-CGACCGACGGTCTCACTTGAGTCACGAATCAACCGTTTAATTGATTC 139 Query 198 taatcaatctcaatcaccatcaccatcatcactatcaaGGTCTATATACTCTGATAGATT 257 |||| || | |||| | || || | | ||| || |||| ||||| ||||| || Sbjct 140 AAATC-AT-T--ATCA-C-TCTCC-T--T--CTA--AA--CCTATTTACTCAGATAGGTT 184 Query 258 TATCCCCAGTAGATCCGGATCCAATTTCGCTCTTTTCGATCT---ATCTCCTTCTCC-TA 313 ||| || |||||||| || ||||||||||| ||||||||| | |||| |||| || | Sbjct 185 TATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAA 244 Query 314 GTAAAGATGGTAAGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGCGATGT 373 | |||||||| || |||||||| ||||| ||||| || | ||| ||| ||||| | | Sbjct 245 G-AAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGCTTT 303 Query 374 TTGGTCCTGAGACGCCGGAGAAGA--GA-GATATTACTGGGTTTTCTTCTTCCAGGAATA 430 ||||||| | ||| |||||||||| || | | ||| |||||||||| | || ||||||| Sbjct 304 TTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGAGGAATA 363 Query 431 TTTTTAGGTTTAAGACGGAGACTCATCGGTCTTTGAA-TTCGTTTTCTCCTTTTGGTGT- 488 ||||||||||||||||||| || || |||||||||| || || | | ||||||||| | Sbjct 364 TTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTT-GTATCCGCCTTTTGGT-TC 421 Query 489 TGATGATGATTCTCCTGGTGTT-TCTCATAGTGGTCCTGTTAAAGCTC-CC-AGGAAAG- 544 ||||| || | |||||||| | | || |||||| | ||| || || ||| ||| Sbjct 422 TGATG-TG-GT-GACTGGTGTTAGC-CCTA---GTCCTGCT-AAG-TCGCCGAGG-AAGA 471 Query 545 TGCCGCGATCGCCGTATAAGGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTATC-T 602 | | | || || ||||||||||||||||| |||| || |||||||||||||||| | | Sbjct 472 TTCTTAGGTCTCCTTATAAGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTA-CTT 529 Query 603 GAATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGTGGGACTAGGGAACTGTGTGTA 662 |||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| Sbjct 530 GAATCTCGTGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTA 589 Query 663 TTTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATGTGATCTCGGAGCTGAGGATAG 722 ||| |||||||||||||| ||||| || ||||||||||| ||||| || | ||| || || Sbjct 590 TTTGTGGAATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAG 649 Query 723 TGTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCTGGCTG-TTGGAACTAGTACCG 781 ||||||||||| |||||||| |||||||||| ||| |||| | |||||||||||| | Sbjct 650 CGTTTGCTCAGTTGGTTGGGCACTACGTGGAACACATTTGGC-GATTGGAACTAGTA--G 706 Query 782 -GGAA-AGTTCAGATATGGGATGCGTCACGCTGCAAGAGAACAAGAACAATGGAAGGTCA 839 |||| ||| ||||| ||||||| || ||| ||||| || | |||||||||||||||||| Sbjct 707 TGGAACAGTACAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCA 766 Query 840 TCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGA 899 |||||||||||||||||||||||||||| ||||||| || ||||| || ||||||||||| Sbjct 767 TCGTCTAAGAGTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGA 826 Query 900 CAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCATGTCAGTAAATTGGCAGG 959 |||||| || |||||||||||||| || ||||||||||||||||||||| | ||| Sbjct 827 CAAGAGCATACTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGG 886 Query 960 TCATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACAA-CAGAGAGCTAGCATCTG 1018 ||| ||||| || |||| |||||||| ||||||| |||||| | | ||||||||||| | Sbjct 887 TCACAAATCCGAAATATGTGGACTCAAATGGTCTTTTGACAATC-GCGAGCTAGCATCAG 945 Query 1019 GTGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAAT 1078 ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 946 GTGGAAATGACAATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGAT 1005 Query 1079 A-TAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTCCTCATGTTCATGGGCTT 1137 | | |||||||| | ||||| || ||||||||||| ||||| || ||| |||||| ||| Sbjct 1006 ACT-GTGAACACGCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTT 1064 Query 1138 CTTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTTGGAATACAACCACGAAT 1197 |||||||| |||||||| |||||||||||||| || ||||| ||||| || || || || Sbjct 1065 CTTGCTTCCGGTGGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAAC 1124 Query 1198 ACTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATCTAGCT-TGGTCTAAGAA 1256 ||||||||||||| |||||| || ||| ||||| || ||| | | | ||||||||||| Sbjct 1125 ACTCATTTAAGTTGCATAGACACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAA 1183 Query 1257 CGTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAATCATTGTCTGGAAATA 1316 ||| || |||||||| ||||| |||||||| || |||||||||||||| ||||||||||| Sbjct 1184 CGTGAATGAGCTTGTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATA 1243 Query 1317 CCCAACCATGTCCAAAATTG-CTACTCTAACCGGTCACACATACCGAGT-CTTATACCTT 1374 ||||||||||| ||| ||| | ||||| || |||||||| ||||| || || |||||| Sbjct 1244 TCCAACCATGTCTAAA-TTGGCAACTCTCACGGGTCACACGTACCGCGTTCTG-TACCTT 1301 Query 1375 GCGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATGAAACCTTAAGGTTC 1434 ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||| | ||| Sbjct 1302 GCGGTGTCACCTGATGGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTC 1361 Query 1435 TGGAATGTTTTCCCTTCCCCAAAATCTCAGAACACG-GATAGTGAAATCGGGTCGTCTTT 1493 |||||||| |||||||| || |||||||||| || | || || ||||||||| | | | | Sbjct 1362 TGGAATGTCTTCCCTTCTCCGAAATCTCAGAGCA-GAGAGAGCGAAATCGGGGCAT-TAT 1419 Query 1494 CTTT-GGTAGAACAACAATTCGGTGA 1518 |||| |||||||||||||| |||||| Sbjct 1420 CTTTTGGTAGAACAACAATCCGGTGA 1445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70086050800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5