BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22910.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945828 jgi|Araly1|945828|scaffold_702057.1 2252 0.0
Ahg943082 jgi|Araly1|943082|scaffold_603626.1 1122 0.0
> Ahg945828 jgi|Araly1|945828|scaffold_702057.1
Length=1471
Score = 2252 bits (1219), Expect = 0.0
Identities = 1408/1494 (94%), Gaps = 34/1494 (2%)
Strand=Plus/Plus
Query 44 gagtcaacaaaaaaaaaaaaCCAATGGAAGAAGAAGATCCTA-CAGCAAGCAATGTGATA 102
|||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 1 GAGTCAAC--AAAAAAAAAACC-ATGGAAGAAGAAGATCCTAGC-GCAAGCAATGTGATA 56
Query 103 ACGAATTCGAATTCTTCATCTA-TGAGAAACCTATCGCCGGCGATGAATACTCCGGTGGT 161
|||||||||||||||||||| | |||||| ||||||||| |||||||||||||||||||
Sbjct 57 ACGAATTCGAATTCTTCATC-ACAGAGAAATCTATCGCCGTCGATGAATACTCCGGTGGT 115
Query 162 TTCACTTGAGtcacgaatcaatcgattaatcaatgctaatcaatctcaatcaccatcacc 221
|||||||||||||||||||||||||||||||||||| | || ||||| | |||
Sbjct 116 TTCACTTGAGTCACGAATCAATCGATTAATCAATGC---T-AA--TCAAT---C-TCA-- 163
Query 222 atcatcactatcaaGGTCTATATACTCTGATAGATTTATCCCCAGTAGATCCGGATCCAA 281
|||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 164 ATCA-C-C-ATCAAGGTCTATATACTCTGATAGATTTATTCCCAGTAGATCCGGATCCAA 220
Query 282 TTTCGCTCTTTTCGATCTATCTCCTTCTCCTAGTAAAGATGGTAAGGAAGATGGAGCTGG 341
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 221 TTTCGCTCTCTTCGATCTATCTCCTTCTCCGAGTAAAGATGGTAAGGAAGATGGAGCTGG 280
Query 342 CTCTTACGCTACTCTGTTGCGTGCGGCGATGTTTGGTCCTGAGACGCCGGAGAAGAGAGA 401
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 281 CTCTTACGCTACTCTGTTGCGTGCGGCCATGTTTGGACCAGAGACGCCGGAGAAGAGAGA 340
Query 402 TATTACTGGGTTTTCTTCTTCCAGGAATATTTTTAGGTTTAAGACGGAGACTCATCGGTC 461
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 341 TATTACTGGGTTCTCTTCTTCCAGGAATATTTTCAGGTTTAAGACGGAGACGCATCGGTC 400
Query 462 TTTGAATTCGTTTTCTCCTTTTGGTGTTGATGATGATTCTCCTGGTGTTTCTCATAGTGG 521
||||||||| |||||||||||||||| | |||||||||||||||||||| ||||| |
Sbjct 401 TTTGAATTCTTTTTCTCCTTTTGGTG-T--TGATGATTCTCCTGGTGTTTGTCATA---G 454
Query 522 TCCTGTTAAAGCTCCCAGGAAAGTGCCGCGATCGCCGTATAAGGTATTGGATGCACCGGC 581
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 455 TCCTGTTAAAGCTCCCAGGAAAGTGCCGCGATCGCCGTATAAAGTATTGGATGCACCGGC 514
Query 582 CTTGCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGT 641
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 515 CTTGCAAGATGATTTTTATCTGAATCTCGTGGATTGGTCTGCACAAAATGTTCTTGCAGT 574
Query 642 GGGACTAGGGAACTGTGTGTATTTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATG 701
|||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 575 GGGATTAGGGAACTGCGTTTATTTATGGAATGCTTGTAGCAGCAAGGTAACTAAGTTATG 634
Query 702 TGATCTCGGAGCTGAGGATAGTGTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCT 761
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 635 TGATCTTGGAGCTGAGGATAGTGTTTGCTCTGTGGGTTGGGCGTTACGTGGAACTCATCT 694
Query 762 GGCTGTTGGAACTAGTACCGGGAAAGTTCAGATATGGGATGCGTCACGCTGCAAGAGAAC 821
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 695 GGCTGTTGGAACTAGTACCGGGAAAGTTCAGATATGGGATGCGTCACGCTGCAAAAGAAC 754
Query 822 AAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCT 814
Query 882 GTCATCTGGTAGCAGAGACAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCA 941
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTCATCTGGTAGCAGAGATAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCA 874
Query 942 TGTCAGTAAA-TTGGCAGGTCATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACA 1000
|||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 875 TGTCAGTAAACTTA-CAGGTCACAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACA 933
Query 1001 ACAGAGAGCTAGCATCTGGTGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAA 1060
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 934 ACAGGGAGTTAGCATCTGGTGGAAACGACAATCGGCTTTTTGTATGGAACCAACATTCAA 993
Query 1061 CACAACCGGTTTTGAAATATAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTC 1120
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 994 CACAACCGGTTTTGAAATATAGTGAACACACTGCAGCGGTGAAAGCCATTGCTTGGTCTC 1053
Query 1121 CTCATGTTCATGGGCTTCTTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTT 1180
|||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct 1054 CTCATGTTCATGGGCTTCTTGCCTCTGGTGGGGGAACTGCTGATAGGTGCATACGTTTTT 1113
Query 1181 GGAATACAACCACGAATACTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATC 1240
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 GGAATACAACGACGAACACTCATTTAAGCTCCATAGATACTTGCAGTCAGGTATGCAATC 1173
Query 1241 TAGCTTGGTCTAAGAACGTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAA 1300
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1174 TCGCTTGGTCTAAGAACGTAAACGAGCTAGTTAGCACACATGGATACTCTCAGAACCAAA 1233
Query 1301 TCATTGTCTGGAAATACCCAACCATGTCCAAAATTGCTACTCTAACCGGTCACACATACC 1360
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 1234 TCATTGTCTGGAAATACCCAACCATGTCCAAAATTGCAACTCTGACTGGTCACACATACC 1293
Query 1361 GAGTCTTATACCTTGCGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATG 1420
| ||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1294 GCGTCCTGTACCTTGCGGTTTCACCCGATGGACAGACGATTGTTACCGGAGCAGGAGATG 1353
Query 1421 AAACCTTAAGGTTCTGGAATGT-TTTCCCTTCCCCAAAATCTCAGAACACGGATAGTGAA 1479
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1354 AAACCTTACGGTTCTGGAATGTGTTTCC-TTCCCCAAAATCTCAGAACACGGATACTGAA 1412
Query 1480 ATCGGGTCGTCTTTCTTTGGTAGAACAACAATTCGGTGAGAAG-TTACTTTCAA 1532
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1413 ATCGGGTCGTCTTTCTTTGGTAGAACAACAATTCGGTGA-AAGGTTACTTTCAA 1465
> Ahg943082 jgi|Araly1|943082|scaffold_603626.1
Length=1465
Score = 1122 bits (607), Expect = 0.0
Identities = 1151/1406 (82%), Gaps = 67/1406 (5%)
Strand=Plus/Plus
Query 139 CCGGCGATGAATAC-TCCGGTGGTTTCACTTGAGtcacgaatcaatcgattaatcaatgc 197
||| |||||||| | ||| ||| |||||||||||||||||||| || ||||| || |
Sbjct 81 CCGTCGATGAAT-CGACCGACGGTCTCACTTGAGTCACGAATCAACCGTTTAATTGATTC 139
Query 198 taatcaatctcaatcaccatcaccatcatcactatcaaGGTCTATATACTCTGATAGATT 257
|||| || | |||| | || || | | ||| || |||| ||||| ||||| ||
Sbjct 140 AAATC-AT-T--ATCA-C-TCTCC-T--T--CTA--AA--CCTATTTACTCAGATAGGTT 184
Query 258 TATCCCCAGTAGATCCGGATCCAATTTCGCTCTTTTCGATCT---ATCTCCTTCTCC-TA 313
||| || |||||||| || ||||||||||| ||||||||| | |||| |||| || |
Sbjct 185 TATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAA 244
Query 314 GTAAAGATGGTAAGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGCGATGT 373
| |||||||| || |||||||| ||||| ||||| || | ||| ||| ||||| | |
Sbjct 245 G-AAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGCTTT 303
Query 374 TTGGTCCTGAGACGCCGGAGAAGA--GA-GATATTACTGGGTTTTCTTCTTCCAGGAATA 430
||||||| | ||| |||||||||| || | | ||| |||||||||| | || |||||||
Sbjct 304 TTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGAGGAATA 363
Query 431 TTTTTAGGTTTAAGACGGAGACTCATCGGTCTTTGAA-TTCGTTTTCTCCTTTTGGTGT- 488
||||||||||||||||||| || || |||||||||| || || | | ||||||||| |
Sbjct 364 TTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTT-GTATCCGCCTTTTGGT-TC 421
Query 489 TGATGATGATTCTCCTGGTGTT-TCTCATAGTGGTCCTGTTAAAGCTC-CC-AGGAAAG- 544
||||| || | |||||||| | | || |||||| | ||| || || ||| |||
Sbjct 422 TGATG-TG-GT-GACTGGTGTTAGC-CCTA---GTCCTGCT-AAG-TCGCCGAGG-AAGA 471
Query 545 TGCCGCGATCGCCGTATAAGGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTATC-T 602
| | | || || ||||||||||||||||| |||| || |||||||||||||||| | |
Sbjct 472 TTCTTAGGTCTCCTTATAAGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTA-CTT 529
Query 603 GAATCTTGTGGATTGGTCTGCACAAAATGTTCTAGCAGTGGGACTAGGGAACTGTGTGTA 662
|||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| |||||
Sbjct 530 GAATCTCGTGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTA 589
Query 663 TTTATGGAATGCTTGTAGCAGCAAGGTTACTAAGTTATGTGATCTCGGAGCTGAGGATAG 722
||| |||||||||||||| ||||| || ||||||||||| ||||| || | ||| || ||
Sbjct 590 TTTGTGGAATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAG 649
Query 723 TGTTTGCTCAGTGGGTTGGGCGTTACGTGGAACTCATCTGGCTG-TTGGAACTAGTACCG 781
||||||||||| |||||||| |||||||||| ||| |||| | |||||||||||| |
Sbjct 650 CGTTTGCTCAGTTGGTTGGGCACTACGTGGAACACATTTGGC-GATTGGAACTAGTA--G 706
Query 782 -GGAA-AGTTCAGATATGGGATGCGTCACGCTGCAAGAGAACAAGAACAATGGAAGGTCA 839
|||| ||| ||||| ||||||| || ||| ||||| || | ||||||||||||||||||
Sbjct 707 TGGAACAGTACAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCA 766
Query 840 TCGTCTAAGAGTTGGAGCCCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGA 899
|||||||||||||||||||||||||||| ||||||| || ||||| || |||||||||||
Sbjct 767 TCGTCTAAGAGTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGA 826
Query 900 CAAGAGTATTCTTCAGAGAGACATAAGGTGTCAAGAAGATCATGTCAGTAAATTGGCAGG 959
|||||| || |||||||||||||| || ||||||||||||||||||||| | |||
Sbjct 827 CAAGAGCATACTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGG 886
Query 960 TCATAAATCTGAGGTATGCGGACTCAAGTGGTCTTATGACAA-CAGAGAGCTAGCATCTG 1018
||| ||||| || |||| |||||||| ||||||| |||||| | | ||||||||||| |
Sbjct 887 TCACAAATCCGAAATATGTGGACTCAAATGGTCTTTTGACAATC-GCGAGCTAGCATCAG 945
Query 1019 GTGGAAACGACAATAGGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAAT 1078
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 946 GTGGAAATGACAATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGAT 1005
Query 1079 A-TAGTGAACACACTGCAGCTGTTAAAGCCATTGCTTGGTCTCCTCATGTTCATGGGCTT 1137
| | |||||||| | ||||| || ||||||||||| ||||| || ||| |||||| |||
Sbjct 1006 ACT-GTGAACACGCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTT 1064
Query 1138 CTTGCTTCTGGTGGTGGTACTGCTGATAGATGCATACGTTTTTGGAATACAACCACGAAT 1197
|||||||| |||||||| |||||||||||||| || ||||| ||||| || || || ||
Sbjct 1065 CTTGCTTCCGGTGGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAAC 1124
Query 1198 ACTCATTTAAGTTCCATAGATACTTGCAGTCAGGTATGCAATCTAGCT-TGGTCTAAGAA 1256
||||||||||||| |||||| || ||| ||||| || ||| | | | |||||||||||
Sbjct 1125 ACTCATTTAAGTTGCATAGACACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAA 1183
Query 1257 CGTAAACGAGCTTGTTAGCACACACGGATACTCTCAGAACCAAATCATTGTCTGGAAATA 1316
||| || |||||||| ||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 1184 CGTGAATGAGCTTGTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATA 1243
Query 1317 CCCAACCATGTCCAAAATTG-CTACTCTAACCGGTCACACATACCGAGT-CTTATACCTT 1374
||||||||||| ||| ||| | ||||| || |||||||| ||||| || || ||||||
Sbjct 1244 TCCAACCATGTCTAAA-TTGGCAACTCTCACGGGTCACACGTACCGCGTTCTG-TACCTT 1301
Query 1375 GCGGTTTCACCCGATGGACAGACGATTGTAACAGGAGCAGGAGATGAAACCTTAAGGTTC 1434
||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||| | |||
Sbjct 1302 GCGGTGTCACCTGATGGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTC 1361
Query 1435 TGGAATGTTTTCCCTTCCCCAAAATCTCAGAACACG-GATAGTGAAATCGGGTCGTCTTT 1493
|||||||| |||||||| || |||||||||| || | || || ||||||||| | | | |
Sbjct 1362 TGGAATGTCTTCCCTTCTCCGAAATCTCAGAGCA-GAGAGAGCGAAATCGGGGCAT-TAT 1419
Query 1494 CTTT-GGTAGAACAACAATTCGGTGA 1518
|||| |||||||||||||| ||||||
Sbjct 1420 CTTTTGGTAGAACAACAATCCGGTGA 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5