BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22920.1
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492573 jgi|Araly1|492573|fgenesh2_kg.7__2006__AT4G22920.1 2054 0.0
> Ahg492573 jgi|Araly1|492573|fgenesh2_kg.7__2006__AT4G22920.1
Length=1530
Score = 2054 bits (1112), Expect = 0.0
Identities = 1383/1503 (92%), Gaps = 62/1503 (4%)
Strand=Plus/Plus
Query 1 GCCGAATCTGTGTC-TCTTTGTCGCAACGAGATGGCTAAAGTTATCCAAAAAGACGGTTA 59
|||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1 GCCGAATCTGTGTCAT-TTTGTCGCAACGAGATGGCT-AAGTTATCC-AAAAGACGGTTA 57
Query 60 GAGCCAGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATT-AG-AG 117
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 58 GAGCCGGTTGTTAGCCCCACCATGACGACACATGGGGAAGCTCATGCAAAGATTAAGAAG 117
Query 118 AACACGTGGCACTCTCTCGTGTTCAGAAAAATTCCAAAAGAGTGTTCAGATTTGGGCACG 177
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 118 AACACGTGGCACTCTCTCGTGTTCAGAAAATTTCCAAAAGAGCGTTCAGATTTGGGCACA 177
Query 178 GAAGTGTGAAACGTGAAGCAAC-AATCCCTTTTAAACACAAGAACCAA-CTCAATACGCA 235
|||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||
Sbjct 178 GAAGTGTGAAACGTGAAGCAACGAATCACTTTTAAACACAAGAACCAACCT-TATACGCA 236
Query 236 TCAC-AAAGAACCCTAAATTCCTGGAAGATCtcaaaaggaaaattcaaaaccaaagcttc 294
|||| ||||||||||||||||| ||||||| | | | ||||||||| ||||
Sbjct 237 TCACAAAAGAACCCTAAATTCCAGGAAGAT-T------G---A---AAAACCAAATCTTC 283
Query 295 aagcaatcatcaagcaaaggaaaagctcaaaTTTTGGGTCTTTTATATATTTATTTCTTA 354
||| || ||| ||| |||| |||||| |||||||| || | ||||| || |
Sbjct 284 AAG----CA--AAGGAAA--AAAAACTCAAAATTTGGGTC--TT-T-TATTT-CTT-AAA 329
Query 355 AAGTTACAATCTTTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAACTCGCGTGAAAA 414
||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 330 AAGTTACAAGC-TTTTGATTGTGGTTTCAGTGTACGAACACGCAAGAAATCGCGTGAAAA 388
Query 415 AATTGTATCCAAGCTTCGTGA-AAGGAGTCTCTCTGTATTTAGTGGCGTTTTG-TTCTGT 472
|||||||||||||||||| || || || |||||||||||||||||| | |||| ||||||
Sbjct 389 AATTGTATCCAAGCTTCG-GAGAA-GA-TCTCTCTGTATTTAGTGGTGCTTTGTTTCTGT 445
Query 473 TGTTATTTCTGAAATATTGAAGCTTTTGATTTGGGTTTCAAGAGAGC--AGAGATGTGTA 530
| | |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 446 TCTAATTTCTGAAAAATTGAAGCTTTTGATTT-GGTTTCAAGAGAGCAGAGAGATGTGTA 504
Query 531 GTTTGTCGGCGATTATGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA 590
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GTTTGTCGGCGAATCTGTTGTTACCAACGAAGCTGAAACCAGCTTATTCAGACAAACGGA 564
Query 591 GTAACAGTAGCAGCAGCAGCTCACTCTTCTTCAACAATAGAAGATCCAAGAAGAAGAACC 650
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 565 GTAACAGT---AGCAGCAGCTCACTCTTCTTCACCAACAGAAGATCCAAGAAGAAGAATC 621
Query 651 AATCGATTGTTCCCGTTGCAAGGTTGTTTGGACCGGCGATTTTCGAATCATCCAAATTGA 710
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 622 AATCGATTGTTCCCGTTGCAAGATTGTTTGGACCCGCGATTTTCGAATCATCCAAATTGA 681
Query 711 AAGTACTCTTCTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGGACTTACA 770
||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 682 AAGTATTGTTTTTAGGGGTTGATGAGAAGAAGCATCCTTCAACGCTCCCTAGAACTTACA 741
Query 771 CACTCACTCACAGTGACATTACAGCTAAACTAACCTTAGCTATTTCTCAATCCATAAACA 830
| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 742 CTCTCACTCACAGTGACATTACAGCTAAATTAACTTTAGCTATTTCTCACTCCATAAACA 801
Query 831 ACTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA 890
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 ATTCTCAGTTGCAAGGATGGGCAAATAGGCTATACCGGGATGAAGTTGTGGCAGAATGGA 861
Query 891 AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 AGAAAGTGAAAGGGAAAATGTCGCTTCACGTTCATTGTCACATAAGCGGTGGCCATTTCC 921
Query 951 TTTTAGATCTCTTTGCAAAGTTTCGATATTTCATCTTTTGCAAAGAACTACCTGTGGTGT 1010
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 922 TTTTAGATCTCTTTGCAAAGTTTCGATACTTCATCTTTTGCAAAGAACTACCAGTGGTGT 981
Query 1011 TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAACTATCCTGAGCTACAAGAAG 1070
|||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 982 TGAAGGCTTTTGTGCATGGAGATGGGAACTTGTTGAACAATTACCCTGAGTTACAAGAAG 1041
Query 1071 CTCTTGTTTGGGTCTATTTCCATTCTAATGTCAATGAGTTCAACAAAGTCGAGTGTTGGG 1130
||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1042 CTCTTGTTTGGGTTTACTTCCATTCTAATGTCAACGAGTTCAACAAAGTCGAATGTTGGG 1101
Query 1131 GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGAGACTCTTCCCGAGGCTC 1190
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1102 GTCCGCTTTGGGAAGCTGTTTCGCCTGATGGTCACAAGACTGGGACTCTTCCCGATGCTC 1161
Query 1191 GGTGTGCGGACGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA 1250
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GGTGCGCGGAAGAGTGTAGTTGTTGTTTTCCAACCGTTAGCTCGATTCCATGGTCTCATA 1221
Query 1251 GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAGGGAATTGCTACTC 1310
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1222 GTCTTAGTAATGAAGGTGTAAATGGTTACTCTGGGACTCAGACTGAAGGAATTGCTACTC 1281
Query 1311 CAAATCCGGAGAAACTCTAGTGACTAAATATCAAATTACAAGTTTTTCTTTTGGT----- 1365
| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1282 CTAATCCGGAGAAACTCTAGTGATTAAACATCAAACTACAAGTTTTTCTTTTGGTTTCTG 1341
Query 1366 --AGTTTGTACAAA-GTGAAAAGGAAATGGCAGGACTTTCCTTTTGGTGGATCTAAATAT 1422
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1342 GTAGTTTGTATAAAAGTGAAAAGGAAATGGCAGGTCTTTCCTTTTGGTGGATCTAAATAT 1401
Query 1423 TGGTTTGGTTTGGTGTACATAATGTGGTATAGGAAAATAATGATTATTTGTAGGTTAAAT 1482
||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1402 TGGTTTGGT--G-T--ACATAATGTGGTATAGGAAAATAATGATTATCTGTAGGTTAAAT 1456
Query 1483 ACA 1485
|||
Sbjct 1457 ACA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5