BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22930.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492572 jgi|Araly1|492572|fgenesh2_kg.7__2005__AT4G22930.1 2383 0.0
> Ahg492572 jgi|Araly1|492572|fgenesh2_kg.7__2005__AT4G22930.1
Length=1538
Score = 2383 bits (1290), Expect = 0.0
Identities = 1459/1541 (95%), Gaps = 10/1541 (1%)
Strand=Plus/Plus
Query 112 AGCTTTCAGATGATAAAGACTTTGGTCTCTCC-T-TA-TAGTGGATTTGGATCTCAGAAG 168
|||||| ||||||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 1 AGCTTTGAGATGATAAAGACTTTGGTTTCTCCTTGTACTAGTGGATTTGGATCTCAGAAG 60
Query 169 TTGAAGTTTGACAGATCTTCTGAGAAAGTGAAGACGAGAGCAGTAAGAATGGAGCTCACA 228
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAAGTTTGACAGATCTTGTAAGAAAGTGAAGACGAGAGCAGTAAGAATGGAGCTCACT 120
Query 229 ATCACTCAACCTGATGATTGGCATCTTCATCTCCGTGACGGTGATCTTCTTCATGCTGTT 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCACTCAACCTGATGATTGGCATCTTCATCTCCGTGACGGTGATCTTCTTCATGCTGTT 180
Query 289 GTTCCCCACAGTGCGAGTAATTTTAAGAGAGCGATTGTGATGCCGAATCTGAAGCCTCCT 348
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 GTTCCCCACAGTGCGAGTATTTTTAAGAGAGCGATTGTGATGCCGAATCTCAAGCCGCCT 240
Query 349 GTCACCTCCACTGCAGCTGCCATTATTTACCGGAAATTTATCATGAAAGCTTTGCCATCT 408
|| || |||||||||||||| || ||||||| ||| |||||||||||||||||||| |
Sbjct 241 GTTACAACCACTGCAGCTGCCGTTGCTTACCGGGAATCTATCATGAAAGCTTTGCCATAT 300
Query 409 GAGAGTAGCTTTGATCCACTTATGACACTTTATTTGACTGACAAAACTCTACCTGAAGAG 468
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 301 GGGAGCAGCTTTGATCCACTTATGACACTTTATTTGACTGACAAAACTCAACCTGATGAG 360
Query 469 ATCAGGCTTGCAAGGGAAAGTGGTGTGGTTTATGCGGTGAAGCTGTACCCTGCCGGAGCA 528
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCAAGCTTGCAAGGGAAAGTGGTGTGGTTTATGCGGTGAAGCTGTACCCTGCCGGAGCA 420
Query 529 ACAACCAACTCTCAAGATGGTGTCACGGATCTCTTTGGAAAATGCTTACCGGTACTAGAA 588
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 421 ACAACCAACTCTCAAGATGGTGTCACGGACCTTTTTGGAAAATGCTTACCGGTACTAGAG 480
Query 589 GAGATGGTCAAACAAAACATGCCTTTGCTGGTTCATGGGGAGGTCACAGATCCGAGTATC 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGATGGTCAAACAAAACATGCCTTTGCTGGTTCATGGGGAGGTCACAGATCCGAGTATT 540
Query 649 GATGTCTTTGACCGCGAGAAAATCTTCATTGAGACAGTTCTGCAGCCTCTAATCCAACGC 708
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATGTCTTTGACCGTGAGAAAATCTTCATTGAGACAGTTCTGCAGCCTCTAATCCAACGC 600
Query 709 CTTCCGCAGCTGAAAGTAGTGATGGAACACATCACAACCATGGATGCTGTGAATTTTGTT 768
||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 CTTCCACAACTGAAAGTAGTGATGGAACACATCACTACCATGGATGCTGTGAATTTTGTT 660
Query 769 GAATCTTGCAAAGAAGGGTCTGTGGGTGCAACAGTCACACCACAACATCTCCTTCTCAAC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAATCTTGCAAAGAAGGGTCTGTGGGTGCAACAGTCACACCACAACATCTCCTTCTCAAC 720
Query 829 AGGAACGCCCTTTTCCAAGGTGGATTACAACCTCACAACTACTGTCTTCCCGTTCTCAAA 888
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAATGCCCTCTTCCAAGGTGGATTACAACCTCACAACTACTGTCTTCCCGTTCTCAAA 780
Query 889 AGAGAAATACATAGAGAAGCCATTGTCAAAGCTGTAACTAGTGGAAGCAAGAAGTTCTTC 948
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AGAGAAATACATCGAGAAGCCATTGTTAAAGCTGTAACTAGTGGAAGCAAGAAGTTCTTC 840
Query 949 CTCGGCACAGATAGTGCTCCACATGAACGGAGTAGAAAAGAATCATCCTGCGGATGTGCT 1008
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 CTCGGCACAGATAGTGCTCCACATGAACGGACTAGAAAAGAATCATCCTGCGGATGTGCT 900
Query 1009 GGTATTTACAGCGCTCCCATTGCCTTGTCCCTATACGCCAAGGTCTTTGATGAGGCGGGT 1068
||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 GGTATTTACAGTGCTCCCGTTGCCTTGTCCTTATACGCCAAGGTCTTTGATGAGGCGGGT 960
Query 1069 GCGCTGGACAAGTTGGAAGCTTTCACCAGTTTCAATGGACCTGATTTCTATGGCCTTCCG 1128
||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 961 GCGCTTGACAAGTTGGAAGCTTTCACAAGCTTCAATGGACCTGATTTCTATGGCCTACCG 1020
Query 1129 AGAAACTCGTCAAAGATCACACTGAAGAAATCTCCTTGGAAGGTTCCAGACGTTTTCAAC 1188
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 AGAAACTCCTCAAAGGTCACACTGAAGAAATCTCCTTGGAAAGTTCCAGACGTTTTCAAC 1080
Query 1189 TTC-CCATTCGGAGAGATCGTCCCTATGTTTGCTGGAGAAACCCTTCAATGGCAACCGTT 1247
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCTCC-TTCGGAGAGATCGTCCCTATGTTTGCTGGAGAAACCCTTCAATGGCAACCGTT 1139
Query 1248 GAAATAATGTGGTGATTTGAAGTTGTCAAATTTTTTCTCCCAAATAAGTGAACTCGTGTA 1307
|||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 1140 GAAATAATGTGGTGGTTTGAAGTTGTCAAATTTT--CTCCCAAATCAGTGAACTCTTGTA 1197
Query 1308 CCTTTTGGATTGAATTTTCTTACGGCTGAGTTATGCCCTGCATTTTTTGAGGAATAAAAG 1367
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1198 CCTTTTGGATTGGATTTTCTTACGGCTGAGTTATGCCCTGGATTTTTTGAGAAATAAAAG 1257
Query 1368 CAAGATACTGACCAATAATGTTTATTTTGTGTTTGAATCTGTCTATTTTCTCTATATTGA 1427
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 CAAGATACTGACCAATAATGTCTATTTTGTGTTTGAATCTGTCTATTTTTTCTATATTGA 1317
Query 1428 ATCTAAATGACAGTATAATTCTCAATCAGTGTGGGTCTGATTCCTAGTCCTCC-C--GAC 1484
|||||||||||||||||||||||| || | ||||||||||||||||||||||| | |||
Sbjct 1318 ATCTAAATGACAGTATAATTCTCATTCGGAGTGGGTCTGATTCCTAGTCCTCCACCCGAC 1377
Query 1485 GAAGATGTTCCATTCTCGTAAAGGCTAGGCAGAAATGCTGTTGGGTGAAGTGTAGATGGA 1544
||||||| |||||||||||||||||||||||||| || |||||||| || | ||||||||
Sbjct 1378 GAAGATGATCCATTCTCGTAAAGGCTAGGCAGAATTGATGTTGGGTTAACTCTAGATGGA 1437
Query 1545 CTCATTGGCCAAGGTATGCGTTCCTCCATATTCACTGATCCGCCTAGATTCGGTTCTTCT 1604
|||| ||||||||||||| |||||||||| |||| |||||||||||||||| |||||| |
Sbjct 1438 CTCAGTGGCCAAGGTATGGGTTCCTCCATTTTCATTGATCCGCCTAGATTCTGTTCTTTT 1497
Query 1605 GTAGATGGGTCCATGTAAGAGACTTTCGCGTTAGTTTCATC 1645
|||||||||| ||||||||||||||||||||||||||||
Sbjct 1498 CTAGATGGGTCTGTGTAAGAGACTTTCGCGTTAGTTTCATC 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5