BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22950.1
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492570 jgi|Araly1|492570|fgenesh2_kg.7__2003__AT4G22950.1 1122 0.0
> Ahg492570 jgi|Araly1|492570|fgenesh2_kg.7__2003__AT4G22950.1
Length=688
Score = 1122 bits (607), Expect = 0.0
Identities = 663/690 (96%), Gaps = 4/690 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGGGGCAAAACGGAGATGAAGAGGATAGAGAACGCAACAAGCAGGCAAGTGACG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAGGGGCAAAACGGAGATGAAGAGGATAGAGAACGCAACAAGCAGGCAAGTGACA 60
Query 61 TTTTCGAAGAGAAGAAATGGACTCTTGAAGAAAGCCTTCGAATTATCGGTCCTTTGTGAT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTTCGAAGAGAAGAAATGGACTCTTGAAGAAAGCTTTCGAATTATCGGTCCTTTGTGAT 120
Query 121 GCTGAAGTTGCTTTGGTTATCTTCTCTCCAAGATCCAAACTCTATGAGTTCTCTAGCTCT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGAAGTTGCTTTGGTCATCTTCTCTCCAAGATCCAAACTCTATGAGTTCTCTAGCTCT 180
Query 181 AGTATAGCAGCAACAATTGAACGCTATCAGAGACGAATAAAAGAAATTGGGAATAATCAT 240
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 181 AGTATAGCAAAAACAATTGAACGCTATCAGAGACGAATAAAAGAAATTGGGATTAACCAT 240
Query 241 AAGAGAAATGATAATTCTCAGCAAGCGAGAGACGAAACATCTGGATTGACAAAAAAGATT 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AAGAGAAATGATAATTCTCAGCAAGCGAGAGACGAAACATCTGGTTTGACAAAAAAGATT 300
Query 301 GAACAGCTAGAGATATCTAAACGAAAATTGCTTGGAGAAGGCATTGATGCATGTTCCATC 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GAACAGCTAGAGACATCTAAACGAAAATTGCTTGGAGAAGGCATTGATGCATGTTCTATC 360
Query 361 GAGGAGCTGCAACAGTTAGAGAATCAGTTGGACCGAAGCTTGAGCAGGATAAGAGCCAAG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GAGGAGCTGCAACAGTTAGAGAATCAGTTGGAGCGAAGCTTGAGCAGGATAAGAGCCAAG 420
Query 421 AAGTACCAATTACTCCGTGAAGAAATTGAGAAGTTGAAGGCAGAGGAGAGGAATCTCGTT 480
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 421 AAGTACCAATTACTCCGTGAAGAAATTGAGAAGTTAAAGGAAGAGGAGAGGAATCTCGTT 480
Query 481 AAGGAAAATAAAGATCTGAAGGAGAAGTGGCTTGGAATGGGAACAGC-AACAATAGCATC 539
|||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 481 AAGGAAAATAAAGAACTGAAGGAGAAGTGGCTTGGAATGGGAGCA-CTAACAATAGCATC 539
Query 540 ATCACAATCAACGTTATCATCATCAGAAGTGAACATAGATGACAATATGGAAGTGGAGAC 599
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ATCACAATCTACGTTATCATCATCAGAAGTGAACTTAGATGACAATATGGAAGTGGAGAC 599
Query 600 TGGTTTGTTCATTGGACCTCCTGAGACAAGACAATCCAA-AAAATTCCCTCCTCAAAATT 658
||||||||||||||||||||||||||||||||| | | |||||| | |||||||||||
Sbjct 600 TGGTTTGTTCATTGGACCTCCTGAGACAAGACAGTTGATGAAAATTTC-TCCTCAAAATT 658
Query 659 AATCTTACAACTTCTTCAAAAAGAATGTTT 688
||||| ||||||||||||||||||||||||
Sbjct 659 AATCTCACAACTTCTTCAAAAAGAATGTTT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25389862722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5