BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22960.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354468 jgi|Araly1|354468|fgenesh1_pg.C_scaffold_7001641 739 0.0
> Ahg354468 jgi|Araly1|354468|fgenesh1_pg.C_scaffold_7001641
Length=1437
Score = 739 bits (400), Expect = 0.0
Identities = 695/825 (84%), Gaps = 69/825 (8%)
Strand=Plus/Plus
Query 106 CGATCGATAACTCTCGTCCTCCTCCGGACGAAATCTTTTACAAGACGAAGAAGATTTTGT 165
|||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 9 CGAT-GATTACTCTCGTCCTCCTCCGGACAAAATCTTTTACAAGACGAAGAAGATTAAGT 67
Query 166 ATCGTGGACAAAGGTGCAATATCATTCTCCAGGATAAGAATGGACCATGTCCTCTCATCG 225
|||||||||||| | | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 68 ATCGTGGACAAACGAGGAATATCATTCTCCAGGACGATAATGGACCATGTCCTCTCATCG 127
Query 226 CCATTTGTAATGTTCTTATCTTGAAACACGGAATTAATCTAGACACTTACAATTCTCAAG 285
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 128 CCATTTGTAACGTTCTTATCTTGAAACACGGAATTGATCTAGACACTCACAATTCTCAAG 187
Query 286 TATCTGAAGAGGATTTGGTGAATCTTG-TGATCGATG-TACTGGATGAT-ACAGACGAGT 342
||||||||||| | ||| ||||||||| || ||| | |||| |||| | ||||||||
Sbjct 188 TATCTGAAGAGAAGTTGCTGAATCTTGTTG-GCGA-GATACTTTCTGATGA-AGACGAGT 244
Query 343 ACATTGATATTGGGCTCATCAGAA-AACTTGCTTG-TGGGATAAAT-GTCGATTTGAAAT 399
|||||||| ||| ||||||| ||| ||||| | ||| || || |||||||| ||||
Sbjct 245 ACATTGATGTTGAGCTCATC-GAACGCCTTGC-AGATGGAAT-TATCGTCGATTTAAAAT 301
Query 400 TCGAGAGGATTACGGATTTTGAGTTAACACCTGAGCTAGATATATTTCG-TTCACTTAAG 458
||||||| ||||| ||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct 302 TCGAGAGCATTACAGATTTTGAGTTAACACCTGAGCTAGCTATATTT-GCTTCACTTAAG 360
Query 459 ATTCCTTTGTATCATGGATGGCTAGTTGATCCC-ACGGATGTGGAAATTGTTGCTGCAAT 517
||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||
Sbjct 361 ATTCCTTTGTATCATGGATGGCTAGTTGATCCCCA-GGATTTGGAAACTGTTGCTGCAAT 419
Query 518 CGGAGGCAGATCTCGTGATGAGTTAGAGATTGCGCTTACTACTTTAGACACACAGACTGT 577
||||||||||||| |||||| ||| |||||||||||||| |||| || |||||||||||
Sbjct 420 TGGAGGCAGATCTCATGATGACTTAAAGATTGCGCTTACTGCTTTGGAGACACAGACTGT 479
Query 578 ------T-A----G-T-----T-CTGTTGATTTTGCTGCGTC--T----GC------AGA 607
| | | | | ||||||||||||||||||| | || |||
Sbjct 480 AAAGGCTCAAAATGATCAAAGTTCTGTTGATTTTGCTGCGTCGATTACTGCGTCTGCAGA 539
Query 608 GCATCTTGGATTGGGAAAGGGAGATATTGAAGAAGATGAAATGGTG-TCAAAGGCCTTGG 666
||||| |||||||||||||||||||| ||||||||| ||| || || | |||| |||||
Sbjct 540 GCATCGTGGATTGGGAAAGGGAGATACTGAAGAAGAGGAACTGCTGCTAAAAG-CCTTGA 598
Query 667 CATTATCTGAAATGGAAGCATCGTTAAAGGGAAGTTTTGATACTCA--GAGA-------G 717
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 599 CATTATCTGAAATGGAAGCATCGTTAAAGGGAAGTTTTGATACTCACAGAGACTCAAATG 658
Query 718 ---------TTGTGTCTGGGTCGTTAG-ATGTAAATCAGATCTCTGAGGATGACACATTG 767
|||||||||| || | || |||||||||| || ||||||||||||||||||
Sbjct 659 AAGGAGAGGTTGTGTCTGGATC-TGAGGATGTAAATCAAATTTCTGAGGATGACACATTG 717
Query 768 GTAACTTCTGTGGACATTGAAGCTGGTTGTGCTACCACCCTTGGCAGTAATATCTGTCAG 827
|||||| |||||||| || |||||||||| ||| |||||||||||| ||||||||||||
Sbjct 718 GTAACTGCTGTGGACGCTGCAGCTGGTTGTACTATCACCCTTGGCAGGAATATCTGTCAG 777
Query 828 CTGTCCAAATTTGATGATCAGTTTTCTTCTACGGAATCAGAAGAT 872
| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 778 CAGTCCAAGTTTGATGGTCAGTTTTCTTCTACGGAATCAGAAGAT 822
Score = 460 bits (249), Expect = 1e-128
Identities = 318/352 (90%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 1101 TCAGTTTATGAAGTCCAGTCTCTTCTTGGACAAAGCTCTCCGGAAGGGAAGGGTACAAAA 1160
||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 943 TCAGTTTATGAAGTCGAGTCACTTCTTGGACAAAGCTCTCCGGAAGGGAAGGATACAAAT 1002
Query 1161 GGGCTCACGCAAGAAGAGGGTGAATTGATCAAAGGATTCTTTGAA-GAAAGTGTCACTCA 1219
||||||||||||||||||||| || ||||||||| |||||| ||| || |||| || |||
Sbjct 1003 GGGCTCACGCAAGAAGAGGGTAAAGTGATCAAAGAATTCTT-GAAAGATAGTGCCAGTCA 1061
Query 1220 ACTAACTTGGCATGGGCTCTTTACCTTGGAAGATGACCTTAAAGAATGGGAACTTTGTGT 1279
| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1062 ATTAACTTGGCATGGGCTCTATACCTTGGAAAATGACCTTGAAGAATGGGAACTTTGTGT 1121
Query 1280 CCTGTTCCGCAACAATCACTTCGCTACCATGCTGCAGCATGAAGAAAGACTCTATACTTT 1339
| |||||||||||||||||||| ||||||||||| ||| ||| |||| ||||||||||||
Sbjct 1122 CTTGTTCCGCAACAATCACTTCTCTACCATGCTGAAGCGTGAGGAAAAACTCTATACTTT 1181
Query 1340 GGTTACCTATGAAGGCTATCAGATGCAGCAAGACTTGGTTTGGGAAAGATTCAACAAGAT 1399
||||||| || |||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1182 GGTTACCGATCAAGGCTATCAGATGGAGCAAGACTTGGTTTGGGAAAGATTTAACCAGAT 1241
Query 1400 TGATGGCGATTCTGCCTTCTTTACTGGTTACTTCACGAAATTCATCTTCAAG 1451
|||||||||||||||||||||||||| |||||||| | |||| ||||||
Sbjct 1242 AAATGGCGATTCTGCCTTCTTTACTGGTAACTTCACGGAGTTCAAATTCAAG 1293
Score = 60.2 bits (32), Expect = 5e-08
Identities = 47/54 (87%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1540 TGGCGTTGGAGTTGGAGCAA-AATGACTGGGCTGGAGAAACTGGATCAGAGGTA 1592
|||| |||||||| || || ||| ||||||||||||||||||||||||||||
Sbjct 1365 TGGCACTGGAGTTGCAGGAAGAAT-TCTGGGCTGGAGAAACTGGATCAGAGGTA 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5