BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G22980.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492568 jgi|Araly1|492568|fgenesh2_kg.7__2001__AT4G22980.1 2588 0.0
> Ahg492568 jgi|Araly1|492568|fgenesh2_kg.7__2001__AT4G22980.1
Length=1722
Score = 2588 bits (1401), Expect = 0.0
Identities = 1627/1735 (94%), Gaps = 19/1735 (1%)
Strand=Plus/Plus
Query 5 AAAACACAGAGGAATAGgagagagagagagaggtagagaA-AAAGATGAATTCACACTTC 63
|||| ||||||||||||||||||| | ||||| | |||| |||||||||||||||||||
Sbjct 1 AAAAAACAGAGGAATAGGAGAGAG-G-GAGAGAAAAAGAAGAAAGATGAATTCACACTTC 58
Query 64 ATACAAGAAGCTTCAGAAGCTTGCTTCAATGGCTGCTGTTCATCACCATTCTCATCCCAT 123
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 59 ATACAAGAAGCTTCAGAAACTTGCTTCAATGGCTGGTGTTCATCACCATTCTCATCTCAT 118
Query 124 TCCATGTCTGAGAAACCAGAAGAGCTCGAGTTCTCAGTAACCACAACAGGAACTTCTTTC 183
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||
Sbjct 119 TCCATGTCTGAGAAACAAGAAGAGCTTGAGTTCTCAGTAATCACAACAGGAACTTCATTC 178
Query 184 CTGACCAGA-AACACCAAATTCACCAGCCAAGAATCTCTCCCTCGTCTCCGTACATCTTT 242
|| |||||| || ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 179 CTAACCAGAGAA-ACCAAATTCACGAGTCAAGAATCTCTCCCTCGTCTCCGTACATCTTT 237
Query 243 CTACGATCTCATCACAGCTTTTCCAGATTACTTGCAGACGAATCAAGCCGATCATCTCCG 302
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 CTACGATCTCATCACAGCTTTTCCTGATTACTTGCAGACGAATCAAGCCGATCATCTCCG 297
Query 303 TTCTACAGAGTACCAAAACCTCTCATCATCCTCTCACGTCTTTGGTCAACAACAACCCTT 362
||||| |||||| ||||||||||||| || || ||||| ||||||||||||||||| ||
Sbjct 298 ATCTACCGAGTACGAAAACCTCTCATCCTCTTCCCACGTGTTTGGTCAACAACAACCATT 357
Query 363 GTTCTCTTACTCTCAGTTTCGAGAAATATCCGAATCAGAATCCGATTTGAATCATTCTCT 422
||||||||||||||||||||||||||| || |||| ||||||||| | || |||||
Sbjct 358 GTTCTCTTACTCTCAGTTTCGAGAAATCTCGGAATTAGAATCCGA--T---TC--TCTCT 410
Query 423 CTTAACCTTGTCTTGCAAGCAAGTAAGCTCTGGTAAAGAACTGTTATCATTCGAAGAAGA 482
|| |||||||||| ||||||||| ||||| |||||||||||||| |||||||||| |||
Sbjct 411 -TT-ACCTTGTCTTACAAGCAAGTGAGCTCAGGTAAAGAACTGTTGTCATTCGAAGGAGA 468
Query 483 ATCTCGGTTTCAGTCAAGGATAAGGAAAAGAATCACGAGTTTTATGAATCTCGAAGAATC 542
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 469 ATCTCGGTTTCAGTCAAGGATGAGGAAGAGAATCACGAGTTTTATGAATCTTGAAGAATC 528
Query 543 TGAATATCACATGATTCTAACTCAAGACCGTTCCTCTGCTTTCAAGATTGTAGCAGAACT 602
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 529 AGAATATCACATGATTCTAACTCAAGACCGTTCCGCTGCTTTCAAGATTGTAGCAGAACT 588
Query 603 TTACTCTTTCAAAACAAATCCCAATCTTCTCACAGTGTACAACTACGAAGACGAAGCAGT 662
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 589 CTACTCTTTCAAAACAAATCCCAATCTTCTCACAGTTTATAACTACGAAGACGAAGCAGT 648
Query 663 TGAAGAAATGATCAGAATCTCAGAGAAAAAGGGTATAAAACCCCAATCAGCCGAGTTTTC 722
|||||||||||||||||||||||||||||||||| |||||||| |||| || ||||||||
Sbjct 649 TGAAGAAATGATCAGAATCTCAGAGAAAAAGGGTGTAAAACCCGAATCGGCTGAGTTTTC 708
Query 723 ATGGCCGAGCACTGAGATTCTATCGGAGAAACTGAAGAGGAGAATCACTAGAAGTAAGAG 782
||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 709 ATGGCCGAGCACTGAGATTCTCTCGGAGAAACTGAAGAGGAGAATCAGGATAAGTAAGAG 768
Query 783 AAGA-G--GTAAAAGAGGACTCTTTGTGTTTCCACTTCAATCTCTGGTCACAGGAGCTTC 839
|||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 769 AAGAGGTAGTAAAAGAGGACTCTTTGTGTTTCCACTTCAATCTCTTGTCACAGGAGCTTC 828
Query 840 GTATTCTTACTCATGGATGAGTTTAGCTCGCGAAAGCGAATGGCACGTGTTGCTTGATAC 899
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||
Sbjct 829 GTATTCTTACTCATGGATGAGTTTAGCTCACGAAAACGATTGGCACGTGTTGCTTGACAC 888
Query 900 CTCTGCTTTAGGTTCTAAAGACATGGAAACTTTAGGGCTTTCTCTGTTCCAACCAGATTT 959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 889 CTCTGCTTTAGGTTCTAAAGACATGGAGACTTTAGGGCTTTCTCTGTTCCAACCAGATTT 948
Query 960 CCTCATCTGTTCTTTTACAGAGGTTTTAGGTCAAGATGATCCTTCTGGTTTCGGTTGCTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 949 CCTCATCTGTTCTTTTACAGAGGTTTTAGGTCAAGATGATCCTTCTGGTTTTGGTTGCTT 1008
Query 1020 GTTCGTTAAGAAATCTAGCTCTACAGCTTTGTCAGAGGAACCAACGAATCCGGAGAATCT 1079
|||||||||||||||||||| | | |||||||| || |||||||||||||||| ||||||
Sbjct 1009 GTTCGTTAAGAAATCTAGCTATTCTGCTTTGTCGGAAGAACCAACGAATCCGGCGAATCT 1068
Query 1080 CACGGCAGTAAAAGCAGAGCCATCTTGGAAATGGAAAACAGAGTATCAAGCAGGATATAA 1139
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1069 CACGGTAGTAAAAGCAGAGCCATCTTGGAAATGGAAAACAGAGTATCAAGCAGGATATGA 1128
Query 1140 CGAGATTACCCCTGTGGACCACGAGGACCACAAGGCAGCTTCTACTTCTAGCTCTGAGAT 1199
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1129 CGAGATTACCCCTGTGGACCACGAGGACCACAAGGCTGCTTCTACTTCTGGCTCTGAGAT 1188
Query 1200 AGTTGAAATCGAATCATCG-GTTAAACAAGATAAAGCAATGATTGAGTTTCAAGGATTAG 1258
||||||||||||||||||| || || ||||||||||||||||||||||||| |||| |||
Sbjct 1189 AGTTGAAATCGAATCATCGAGTGAA-CAAGATAAAGCAATGATTGAGTTTCGAGGACTAG 1247
Query 1259 ATCACGCAGATTCTCTAGGACTAATACTAATCAGTAGAAGGTCAAAGTCGTTGACTTTAT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATCACGCAGATTCTCTAGGACTAATACTAATCAGTAGAAGGTCAAAGTCGTTGACTTTAT 1307
Query 1319 GGTTACTACGAGCCTTGAGGACTCTGCAACATCCAGGCTATCATCAAACAGAGATGCCTC 1378
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1308 GGTTACTACGAGCCTTGAGGACTCTCCAACATCCAGGTTATCATCAAACAGAGATGCCTC 1367
Query 1379 TGGTCAAACTCTACGGACCAAAGACAAAACCAAGCCGAGGACCGTCGATTTCTTTCAACA 1438
|||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 1368 TGGTCAAAATCTACGGACCAAAGACGAAACCGAGCCGAGGACCGTCGATTTCGTTCAATA 1427
Query 1439 TTTTCGATTGGCAAGGCGAAAAAGTCGATCCTTTGATGGTGGAGAGGCTTGCAGAGAGGG 1498
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1428 TTTTCGATTGGCAAGGCGAAAAAGTCGATCCATTGATGGTGGAGAGGCTCGCGGAGAGGG 1487
Query 1499 AAAAGATTGGTTTACGATGCGCTTATTTGCATAAGTTTAGGATTGGAAACAAGAGAAGAA 1558
||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1488 AAAAGATTGGTTTGCGATGTGCGTATTTGCATAAGATTAGGATTGGAAACAAGAGAAGAA 1547
Query 1559 GTGATGAAGCTGTGAGCTTGAGATTGTCAGTGGTGACTGTTAGGTTAGGAGGGTTTATGA 1618
|||| |||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1548 GTGAGGAAGCTATGAGTTTGAGATTGTCAGTGGTGAGTGTTAGGTTAGGAGGCTTTATGA 1607
Query 1619 CGAATTTTGAGGATGTTTTTAAGGTTTGGGAGTTTGTGTCGAGGTTTTTGGATGCTGATT 1678
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CGAATTTTGAAGATGTTTTTAAGGTTTGGGAGTTTGTGTCGAGGTTTTTGGATGCTGATT 1667
Query 1679 TTGTTGAGAAAGAGAAGTGGAGAATGAAAGCTCTTGACAAAAACAAATGATTGGT 1733
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1668 TTGTTGAGAAAGAGAAGTGGAGAAAGAAAGCTCTTGAGAAAAACAAATGATTGGT 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5