BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23020.2
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492563 jgi|Araly1|492563|fgenesh2_kg.7__1996__AT4G23020.1 800 0.0
Ahg489994 jgi|Araly1|489994|fgenesh2_kg.6__3128__AT4G11780.1 60.2 5e-08
> Ahg492563 jgi|Araly1|492563|fgenesh2_kg.7__1996__AT4G23020.1
Length=1272
Score = 800 bits (433), Expect = 0.0
Identities = 532/580 (92%), Gaps = 5/580 (1%)
Strand=Plus/Plus
Query 97 ATGACGTCCATCAGTTCCTCCGATCACCCCCTTCCGGTGAGCAAGAAACGATTAAAGCCA 156
|||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTCGATAAGTTCCTCCGATCATCGCCTTCCGGTGAGCAAGAAACGATTAAAGCCA 60
Query 157 TTGATATTACGAGATTTCCTTCTCGATGATCTCAGCTCTTGCTCATCCAACGGCTTCAAA 216
||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 61 TTGATGTTACGAGATTTCCTTCTTGATGATCTCAGCTCTTGCTTATCCAATGGCTTCAAA 120
Query 217 TCTTTCCCTCGTCTCCTCAACGCTGAGATCCAACGGTCAGGAATGTTCCACCACAATCGC 276
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 121 TCTTTCCCTCGTCTCCTCAACACTGAGATCAAACGGTCAGGAATGTTCCACCACAATCGC 180
Query 277 CGTATTACCTGCGGATTAGCGTTTAGTCACGCCGTTCATAAAGCTTCGACGGCGTTACTC 336
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CGTATTACTTGCGGATTAGCGTTTACTCACGCCGTTCATAAAGCTTCGACGGCGTTACTC 240
Query 337 ACCGCCGTTAAACTCTTGCCCTTCCCTTCCTCCGTTAAATCTCAGTCTCGTGATAGAGAT 396
||||||||||||||||||||||| |||||||||||||||| || ||||||| | ||||||
Sbjct 241 ACCGCCGTTAAACTCTTGCCCTTTCCTTCCTCCGTTAAATATCCGTCTCGTAAGAGAGAT 300
Query 397 AACAAGAAAGGACTTTTCTCAAGAAGCTTCTGGAAGAAACTTTCCCGACGTGAACTTAAC 456
|| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 AATAAGAAAGGGCTTTTCTCAAGAAGCTTCTGGAAGAAACTTCCCCGACGTGAACTTAAC 360
Query 457 GTCGACGTCGGAGAGAAGGAACGGAGAACGGATGATCGTGAAGAGGAGATCCAACGGTGT 516
||||||| | |||||| ||||||| |||||| ||||||||| | |||||||||||||||
Sbjct 361 GTCGACG--G-AGAGAACGAACGGAAAACGGAGGATCGTGAACAAGAGATCCAACGGTGT 417
Query 517 AGATCATTCGCGGAGTTTCTTCAAGAGAGTCAAGATCAACTGTCTGATCAGATTTATTAT 576
|||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| | ||
Sbjct 418 AGATCATTTGCGGAGTTTCTTCGAGAGAGTCAAGATCAACCGTCTGATCTGATGTCTTGC 477
Query 577 ATTTCTC-CGACGGATTTATTTTCCGGTGAAGCAACATTGTCAAAGGACGCCGTCGGTGA 635
|||| | ||||||||| ||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 478 -TTTCACACGACGGATTCATTTTCCGGTGAAGCGACATTGTCAAACGACGTCGTCGGTGA 536
Query 636 CTCGTCGAGTTTTAGTAGCGAGGACTCGGAAGTGACTCAG 675
||| |||||||||||||| ||| ||||||| | |||||||
Sbjct 537 CTCATCGAGTTTTAGTAGTGAGAACTCGGAGGCGACTCAG 576
Score = 719 bits (389), Expect = 0.0
Identities = 468/507 (92%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 950 ATGAGAAGAAACA-GATGAGAAAAAGAAGAAGATTAGAGAGTTTGGTACGGCTTGAGCCA 1008
|||| |||||| | ||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 767 ATGAAAAGAAA-ATCATGAGAAAAAGCAGAAGATTTGAGAGTTTGGTACGACTTGAGCCT 825
Query 1009 GTGGATTTAGAGAAACGCATAGAGAAATATGAGGAAAGACAAGATTACAAATCTCACATT 1068
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 826 GTGGATTTAGAGAAACGCATAGAGAAATATGCGGAAAGACAAGATTACAACTCTCACATT 885
Query 1069 ATAGAAATTGAAGAAGATCAATCCGAAATCCGAGCAAACCGTTTGTTTGCTCTAGTGAAG 1128
||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 886 ATAGAAACCGAAGGAGATCAATCTGAAATCCGAGCAAACCGTTTGTTTGCTCTGGTGAAG 945
Query 1129 TCTAGAATAATCGAGGAACAAAACCAATTACTGGCATCTCATGTAGTAGACAATGTGTTG 1188
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 946 TCTAGAATAATCGAGGAACGAAACCAATTGTTGGCATCTCATGTAGTAGACAATGTGTTG 1005
Query 1189 CTAGATTTTTTCAAAGAAAACAATAATAATGAGACAAGAGACGAGGATAAGTTGGTGGAG 1248
||||||||||| ||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1006 CTAGATTTTTTTAAAGAAAACGGGAACAATGAGACAAGAGACGAGGATAAGTTGGTGAAG 1065
Query 1249 ATAGTTGAAGAATGGGTGATGAGGAGACAAGACGATGAATATAATATGTTCATGAGTTGG 1308
| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||
Sbjct 1066 AGAGTTGAAGAATGGGTGATGAGGAAACAAGACGAAGAATATAATATGTTTAGGAGTTGG 1125
Query 1309 AAAGTGAGCGAGAAAAGAGAGATTTATGTGAAGGAAATGAAATGGGGTTGTATCAATGGG 1368
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1126 GAAGTGAGAGAGAAAAGAGAGATTTATACGAAGGAAATGAAATGGGGTTGTATCAATGGA 1185
Query 1369 GATGAGAAAGAGTATGTGGTCGAAGAGTTGGGGAATGGTTTCCTCACTTCCTTGGTTGAC 1428
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 1186 GATGAGAAAGAGTATGTGGTTGAAGAGTTGGGGAATGGTTTCTTCACTTCCTTGATTGAC 1245
Query 1429 GAACTTATCCATGATATATCCTTGTGA 1455
|||||||| |||||| |||||||||||
Sbjct 1246 GAACTTATTCATGATTTATCCTTGTGA 1272
Score = 126 bits (68), Expect = 4e-28
Identities = 72/74 (97%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 692 TAGTAGTTATGATGAGTGGGGATTGTGTAGGGTCACATGTTAGTGACGGATCGTCTCTCA 751
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 689 TAGTAGTTATGAGGAGTGGGGATTGTGTAGGGTCACATGTCAGTGACGGATCGTCTCTCA 748
Query 752 ACGACAACACAGAG 765
||||||||||||||
Sbjct 749 ACGACAACACAGAG 762
> Ahg489994 jgi|Araly1|489994|fgenesh2_kg.6__3128__AT4G11780.1
Length=1434
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 301 AGTCACGCCGTTCATAAAGCTTCGACGGCGTT 332
||||||||||||||||||||||||||||||||
Sbjct 283 AGTCACGCCGTTCATAAAGCTTCGACGGCGTT 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5