BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23030.1 Length=1509 Score E Sequences producing significant alignments: (Bits) Value Ahg889865 jgi|Araly1|889865|Al_scaffold_0007_1851 2385 0.0 > Ahg889865 jgi|Araly1|889865|Al_scaffold_0007_1851 Length=1509 Score = 2385 bits (1291), Expect = 0.0 Identities = 1430/1498 (95%), Gaps = 6/1498 (0%) Strand=Plus/Plus Query 1 ATGGCAGCTCCTTTGTTGATGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAAT 60 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAGCTCCTTTG-T--TGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAAT 57 Query 61 CCGAACCCGACCCACCTTTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCT 120 |||||||||| || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 58 TCGAACCCGACTCATCTCTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCT 117 Query 121 CTCCCACTGATCTTAACCGGTTTACTTCTCTACTCTCGCTCAATGATCTCAATGCTCTTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CTCCCACTGATCTTAACCGGTTTACTTCTCTACTCTCGCTCAATGATCTCAATGCTCTTC 177 Query 181 CTCGGCCGTCTCAACGATCTCTCTGCTCTTTCCGGTGGCTCACTCGCCCTCGGCTTCGCT 240 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 178 CTCGGGCGTCTCAACGATCTCTCTGCTCTCTCCGGTGGCTCACTCGCCCTCGGCTTCGCC 237 Query 241 AACATCACGGGTTACTCTCTCCTCTCCGGTCTCTCTATCGGCATGGAACCCATCTGCGTT 300 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 238 AACATCACCGGTTACTCTCTCCTCTCCGGTCTCTCCATCGGCATGGAACCCATCTGCGTT 297 Query 301 CAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 CAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTT 357 Query 361 TTGCTTCTCCTCTGTTCTCTTCCCATATCTATCCTCTGGCTCAACATCAAGAAGATCCTT 420 |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| Sbjct 358 TTGCTTCTCCTCTGTTCTCTTCCCATCTCTCTCCTCTGGCTCAACATCAAGAACATCCTT 417 Query 421 CTCTTCTTCGGACAAGACGAAGAAATCTCAAACCAAGCTGAGATCTTTATCCTCTTCTCT 480 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 418 CTCTTCTTCGGACAAGACGAAGAAATCTCGAACCAAGCTGAGATCTTTATTCTCTTCTCT 477 Query 481 CTCCCTGATCTGATCCTCCAATCTTTTTTACATCCTATCCGTATCTACCTCCGATCTCAA 540 |||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 478 CTCCCTGATCTGATTCTTCAATCTTTTTTGCATCCTATCCGTATTTACCTCCGATCTCAA 537 Query 541 TCGATCACTCTTCCTCTAACCTACTCTGCTTTCTTCGCAGTATTACTCCACATTCCGATT 600 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct 538 TCGATCACTCTTCCTCTTACCTACTCTGCTTTCTTCGCCGTGTTACTCCACATTCCGATT 597 Query 601 AACTACCTTCTCGTTTCTTCTCTCGGTCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATC 660 || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 598 AATTACCTTCTCGTTTCTTCCCTCGGCCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATC 657 Query 661 TGGACTAATGTCAATCTCCTAGGGTTTCTAATCATCTACATAGTGTTTTCCGGTGTTTAC 720 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 658 TGGACTAATGTCAATCTTCTAGGGTTTCTAATCATCTACATCGTGTTTTCCGGTGTTTAC 717 Query 721 CAGAAGACTTGGGGAGGATTCTCAATGGATTGCTTTAAAGGATGGAGATCTCTAATGAAA 780 ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| Sbjct 718 GAGAAGACTTGGGGAGGATTCTCATTGGATTGCTTTAAAGGATGGAGATCTTTGATGAAA 777 Query 781 CTAGCCATCCCTAGCTGCGTCTCGGTTTGTTTAGAGTGGTGGTGGTATGAAATCATGATT 840 ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 778 CTAGCAATCCCTAGCTGCGTCTCGGTTTGTCTAGAATGGTGGTGGTATGAAATCATGATT 837 Query 841 CTTCTATGTGGATTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATC 900 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 CTTCTCTGTGGGTTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATC 897 Query 901 CAAACCACCGCTTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTATCGACACGT 960 ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 898 CAAACAACCGCGTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTTTCGACACGT 957 Query 961 GTCGGGAATGAATTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCTGCGAGAACCGGA 1020 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 958 GTCGGGAATGAACTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCAGCGAGAACCGGA 1017 Query 1021 CTTAGTTTAAGCCTTGGTTTAGGTTTATTGGCAATGTTTTTCGCTTTGATGGTGAGGAAT 1080 ||| |||||||||| ||||||||| || | || |||||||||||||| |||||||||||| Sbjct 1018 CTTGGTTTAAGCCTAGGTTTAGGTCTAATCGCCATGTTTTTCGCTTTCATGGTGAGGAAT 1077 Query 1081 TGCTGGGCAAGATTGTTCACAGATGAGGAAGAGATTGTGAAGTTGACTTCAATGGTTTTA 1140 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1078 TGCTGGGCTAGATTGTTCACGGATGAGGAAGAGATTGTGAAGTTGACTTCTATGGTTTTA 1137 Query 1141 CCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACCACATTGTGTGGAGTGTTG 1200 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1138 CCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACTACAGTGTGTGGAGTGTTG 1197 Query 1201 AGAGGAAGTGCGAGACCTAAGTTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTG 1260 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1198 AGAGGAAGTGCGAGACCTAAATTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTG 1257 Query 1261 GGAATGCCAGTGGCTGTATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGG 1320 |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 GGAATGCCTGTTGCTATATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGG 1317 Query 1321 CTCGGTCTATTTGCAGCACAAGGCTCGTGCCTGATTTCGATGCTGGTCGTGTTGGCTAGG 1380 |||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1318 CTCGGTCTGTTTGCAGCGCAAGGCTCGTGCCTGGTTTCGATGTTGGTCGTGTTGGCTAGG 1377 Query 1381 ACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGT 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 ACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGT 1437 Query 1441 GATGAAGATGATGGTAATAC-AC-C-GTTTTTATTGGATTCTTTGGATATAGAAGAAA 1495 ||||||||||||||||| || || | |||||| ||||||||||||||||||||||||| Sbjct 1438 GATGAAGATGATGGTAACACGACACCGTTTTTGTTGGATTCTTTGGATATAGAAGAAA 1495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56487833335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5