BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23030.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889865 jgi|Araly1|889865|Al_scaffold_0007_1851 2385 0.0
> Ahg889865 jgi|Araly1|889865|Al_scaffold_0007_1851
Length=1509
Score = 2385 bits (1291), Expect = 0.0
Identities = 1430/1498 (95%), Gaps = 6/1498 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCTCCTTTGTTGATGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAAT 60
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCTCCTTTG-T--TGATCATCAAGAACCAAACAGATCACCGACAAGATCCGAAT 57
Query 61 CCGAACCCGACCCACCTTTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCT 120
|||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCGAACCCGACTCATCTCTCCTCTTCGATCCAAGAAGCCAAATCAATCGCCAAAATATCT 117
Query 121 CTCCCACTGATCTTAACCGGTTTACTTCTCTACTCTCGCTCAATGATCTCAATGCTCTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTCCCACTGATCTTAACCGGTTTACTTCTCTACTCTCGCTCAATGATCTCAATGCTCTTC 177
Query 181 CTCGGCCGTCTCAACGATCTCTCTGCTCTTTCCGGTGGCTCACTCGCCCTCGGCTTCGCT 240
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 CTCGGGCGTCTCAACGATCTCTCTGCTCTCTCCGGTGGCTCACTCGCCCTCGGCTTCGCC 237
Query 241 AACATCACGGGTTACTCTCTCCTCTCCGGTCTCTCTATCGGCATGGAACCCATCTGCGTT 300
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 AACATCACCGGTTACTCTCTCCTCTCCGGTCTCTCCATCGGCATGGAACCCATCTGCGTT 297
Query 301 CAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CAAGCCTTTGGCGCCAAAAGATTCAAACTTTTAGGCCTTGCTTTGCAAAGAACCACACTT 357
Query 361 TTGCTTCTCCTCTGTTCTCTTCCCATATCTATCCTCTGGCTCAACATCAAGAAGATCCTT 420
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||
Sbjct 358 TTGCTTCTCCTCTGTTCTCTTCCCATCTCTCTCCTCTGGCTCAACATCAAGAACATCCTT 417
Query 421 CTCTTCTTCGGACAAGACGAAGAAATCTCAAACCAAGCTGAGATCTTTATCCTCTTCTCT 480
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 418 CTCTTCTTCGGACAAGACGAAGAAATCTCGAACCAAGCTGAGATCTTTATTCTCTTCTCT 477
Query 481 CTCCCTGATCTGATCCTCCAATCTTTTTTACATCCTATCCGTATCTACCTCCGATCTCAA 540
|||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 478 CTCCCTGATCTGATTCTTCAATCTTTTTTGCATCCTATCCGTATTTACCTCCGATCTCAA 537
Query 541 TCGATCACTCTTCCTCTAACCTACTCTGCTTTCTTCGCAGTATTACTCCACATTCCGATT 600
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 538 TCGATCACTCTTCCTCTTACCTACTCTGCTTTCTTCGCCGTGTTACTCCACATTCCGATT 597
Query 601 AACTACCTTCTCGTTTCTTCTCTCGGTCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATC 660
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 598 AATTACCTTCTCGTTTCTTCCCTCGGCCTCGGCCTTAAAGGAGTCGCCTTGGGAGCAATC 657
Query 661 TGGACTAATGTCAATCTCCTAGGGTTTCTAATCATCTACATAGTGTTTTCCGGTGTTTAC 720
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 TGGACTAATGTCAATCTTCTAGGGTTTCTAATCATCTACATCGTGTTTTCCGGTGTTTAC 717
Query 721 CAGAAGACTTGGGGAGGATTCTCAATGGATTGCTTTAAAGGATGGAGATCTCTAATGAAA 780
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 718 GAGAAGACTTGGGGAGGATTCTCATTGGATTGCTTTAAAGGATGGAGATCTTTGATGAAA 777
Query 781 CTAGCCATCCCTAGCTGCGTCTCGGTTTGTTTAGAGTGGTGGTGGTATGAAATCATGATT 840
||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 778 CTAGCAATCCCTAGCTGCGTCTCGGTTTGTCTAGAATGGTGGTGGTATGAAATCATGATT 837
Query 841 CTTCTATGTGGATTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATC 900
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTTCTCTGTGGGTTGTTACTTAACCCGCAAGCAACCGTGGCATCTATGGGAATCTTGATC 897
Query 901 CAAACCACCGCTTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTATCGACACGT 960
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 CAAACAACCGCGTTGATCTACATTTTCCCTTCCTCTCTGAGTATCAGCGTTTCGACACGT 957
Query 961 GTCGGGAATGAATTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCTGCGAGAACCGGA 1020
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 GTCGGGAATGAACTAGGTGCGAATCAGCCTGATAAAGCGAGGATAGCAGCGAGAACCGGA 1017
Query 1021 CTTAGTTTAAGCCTTGGTTTAGGTTTATTGGCAATGTTTTTCGCTTTGATGGTGAGGAAT 1080
||| |||||||||| ||||||||| || | || |||||||||||||| ||||||||||||
Sbjct 1018 CTTGGTTTAAGCCTAGGTTTAGGTCTAATCGCCATGTTTTTCGCTTTCATGGTGAGGAAT 1077
Query 1081 TGCTGGGCAAGATTGTTCACAGATGAGGAAGAGATTGTGAAGTTGACTTCAATGGTTTTA 1140
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 TGCTGGGCTAGATTGTTCACGGATGAGGAAGAGATTGTGAAGTTGACTTCTATGGTTTTA 1137
Query 1141 CCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACCACATTGTGTGGAGTGTTG 1200
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1138 CCGATCATCGGGCTTTGCGAGCTAGGAAACTGTCCTCAGACTACAGTGTGTGGAGTGTTG 1197
Query 1201 AGAGGAAGTGCGAGACCTAAGTTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTG 1260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGAGGAAGTGCGAGACCTAAATTAGGAGCAAACATAAACTTGTGTTGTTTCTACTTTGTG 1257
Query 1261 GGAATGCCAGTGGCTGTATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGG 1320
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAATGCCTGTTGCTATATGGTTAAGTTTCTTTAGCGGGTTTGACTTCAAAGGACTATGG 1317
Query 1321 CTCGGTCTATTTGCAGCACAAGGCTCGTGCCTGATTTCGATGCTGGTCGTGTTGGCTAGG 1380
|||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1318 CTCGGTCTGTTTGCAGCGCAAGGCTCGTGCCTGGTTTCGATGTTGGTCGTGTTGGCTAGG 1377
Query 1381 ACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACTGATTGGGAAGTTGAGGTTCATAGAGCAAAAGAACTCATGACTAGATCATGTGATGGT 1437
Query 1441 GATGAAGATGATGGTAATAC-AC-C-GTTTTTATTGGATTCTTTGGATATAGAAGAAA 1495
||||||||||||||||| || || | |||||| |||||||||||||||||||||||||
Sbjct 1438 GATGAAGATGATGGTAACACGACACCGTTTTTGTTGGATTCTTTGGATATAGAAGAAA 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5