BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23040.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492561 jgi|Araly1|492561|fgenesh2_kg.7__1994__AT4G23040.1 2577 0.0
> Ahg492561 jgi|Araly1|492561|fgenesh2_kg.7__1994__AT4G23040.1
Length=1828
Score = 2577 bits (1395), Expect = 0.0
Identities = 1691/1824 (93%), Gaps = 59/1824 (3%)
Strand=Plus/Plus
Query 39 TATTAATTCTTGCCTCCTCCTTCACTCCAGCTCCAAACACAAATCTCCGACGAAAAACTT 98
||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 20 TATAAATTCTTGCCTCCTCCTTCACTCCAGCTCCGAACACAAATCTCCGACG-AAAACCT 78
Query 99 CTCTCAAG-------CTTTCTCT-TT-TC--TAATGGCGACACCTACTCAGGAAGCTATT 147
|||||||| |||||||| || || ||||||||||||||||||||||||| |||
Sbjct 79 CTCTCAAGCTTTTCTCTTTCTCTCTTCTCTTTAATGGCGACACCTACTCAGGAAGCAATT 138
Query 148 GACACCTTCATGACCATCACCGGCT-CTTCCAATGCCGTCGCCGTTCGTAAGCTCGAGGA 206
|||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 139 GACACCTTTATGACCATCACCGG-TGCTTCCAATGCCGTCGCCGTTCGTAAGCTTGAGGA 197
Query 207 GTATCGTGGGAACCTCAATAGAGCTGTGAATGCATACTTTACTCATGGAGATCAAAATT- 265
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GTATCGTGGGAATCTCAATAGAGCTGTGAATGCATACTTTACTCATGGAGATCAAAATTT 257
Query 266 -C-ATATGATGC---AA-T-----------GGAT-AT--A--G-AT---GATG--G-TGT 296
| | |||| || || | |||| || | | || |||| | |||
Sbjct 258 GCTACATGAAGCCCCAACTAATATCCCTCAGGATGATGCAATGGATATAGATGATGGTGT 317
Query 297 GACTCCAGTCCTCTCTGAAGCTAGAACAACGGACCCGTTCCCGCTTCGTGATCCAAACTT 356
||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 318 GACTCCAGTCCTCTCAGAAGCTAGAACAACGGTCCCGTTCCCGCTTCGGGATCCAAACTT 377
Query 357 TGGGAGAAGTCTATTTGATAATGATCCT-GTTATGTCGCGTCCCCCATTTGTTAGTCATC 415
||||| |||||||||||||||||||||| || ||| | |||||||||||||||||||| |
Sbjct 378 TGGGACAAGTCTATTTGATAATGATCCTCGT-ATGCCACGTCCCCCATTTGTTAGTCAAC 436
Query 416 CAAGGGAGGCCAGGGAGATACCTATAGAGGTTAAAGACAGCAATGGGCCATCAGGTCAAT 475
||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 437 CAAGGGAGGTCAGGCAGATACCTATAGAGGTTAAGGACAGCATTGGGCCATCAGGTCAAT 496
Query 476 CTAATGATGCTCCTACTATTGAGGATGTGACCGAGACAGCTCAAGCTCACGGTCCAGCTG 535
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 497 CTAATGATGCTCCTACTATTGAGGATGTGACCGAGACATCTCAAGCTCATGGTCCAGCTG 556
Query 536 CCCAAGAGGCGGTCATTATAGATGAAGTAAGTGATGATGATAATCAGTCTGCTCCAACCG 595
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 557 CCCAAGAGGCGGTCATTATAGATGAAGTAAGTGATGATGATAGTCAGTCTGCTCCAACCG 616
Query 596 GACAAAGTAGGCATGCTGTACCTGTTGGTTCTGCAGAAAATAATATGCAACATTACAATG 655
||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct 617 GACAAAGTAGGCATGCTGTACCTGTTGGTTCTGCACACAATAATTTGCAATATTACAATG 676
Query 656 ATATAGAAGAACAAATTATTCGAGCTGCTATTGAGGCCTCCAAAATGGAGACTGGTGATG 715
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 677 ATATAGAAGAACAAATGATTCGAGCTGCTATTGAGGCCTCAAAAATGGAGACTGGTGATG 736
Query 716 ACGTAACAAAATCTGTCACAGTGCAGTCAGCTGAGCGA-GAAGTGTTGCGCAGTGAAGGT 774
||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 737 ACGTAACAAAATCTGTCACAGTGCAGTCAGCAGAG-GAAGAAGTGTTGCGCAGTGAAGGT 795
Query 775 TGGAAGGCTTCATCCTCAGAAAGAGAAGCTTCTGAAATGGTTTCTATTCCAGTACAGCAG 834
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 796 TGGAAGGCTTCATCCTCAGAAAGAGAAGCTTCTGAAGTGGTTCCTATTCCAGTACAGCAG 855
Query 835 GGTTCCCGAGCCTCAAATGGAAGATTCGCAGCACCTAGCTCACTGTCTGAGgatgatgat 894
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 TGTACCCGAGCCTCAAATGGAAGATTCGCAGCACCTAGCTCACTGTCTGAGGATGATGA- 914
Query 895 gatgatgatgacgatgaCCCTGATTATGTTGAGGAGGAAGAGGAACCCCTTGTTAGCCAC 954
| ||||| |||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 915 G--GATGA---CGATGACCCTGATTATGTTGAGGA--A-GAGGAACCCCTTGTTAGGCAC 966
Query 955 AGACCAAGACGTGCGGTTTCTGGATCTCGGAGCTCACTTAATGATGATCTTCCCCGGAGC 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 AGACCAAGACGTGCGGTTTCTGGATCTCGGAGCTCACTTAATGATGATCTTCCCCGTAGC 1026
Query 1015 CCTGAAGCAGAAGATGCAACTATTCATTCACCGGGTGCTGGCAATGGTTTTCCTTCTGAG 1074
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1027 CCTGAAGCAGAAGGTGCAACTATTCATTCACCGGATGCGGGCAATGGTTTTCCTTCTGAG 1086
Query 1075 TGGGGAGGCATTTCTTCTGAGGAACATGATGAAGCTATCATGCTAGAGGCTGCCATGTTT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TGGGGAGGCATTTCTTCTGAGGAACATGATGAAGCTATCATGCTAGAGGCTGCCATGTTT 1146
Query 1135 GGTGGCATTTCTGAGAGTGAATATGGTGTTCCTTATGCACATTATCCGCAAAGGACACAG 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GGTGGCATTTCTGAGAGTGAATATGGTGTTCCTTATGCACATTATCCGCAAAGGACACAT 1206
Query 1195 CGTCCACCCTCACCGTCATTGACAGCTCAGAGGTTGATTCGAGAACAGCAGGATGATGAG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1207 CGTCCACCCTCACCGTCATTGACAGCTCAGAGGTTGATTCGAGAACAGCAGGACGATGAG 1266
Query 1255 TATCTTGCATCGCTGGAAGCTGACAGGGTAAAAGCTGAGGCTCGTCGATTGGAGGAAGAA 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1267 TATCTTGCATCGCTGGAAGCTGACAGGGTAAAAGCTGAGGCTCGTCGATTGGAGGAGGAA 1326
Query 1315 GCTGCTAGAGTGGAAGCTATTGAAGAAGCAAAGAGAAAGGAGGAAGAAGCTCGCAGGAAG 1374
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 GCTGCTAGAGTGGAAGCTCTTGAAGAAGCAAAGAGAAAGGAGGAAGAAGCTCGCAGGAAG 1386
Query 1375 GTCGAAGAGGAACAGGAGCTGGAGAGGCAATTAGTTTCAAAGGAAGCATCTCTGCCTCAA 1434
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1387 GTCGAAGAGGAACAGGAACTGGAGAGGCAATTAGTTTCCAAGGAAGCATCTCTGCCTCAG 1446
Query 1435 GAGCCACCAGCCGGGGAAGAGAACGCCATTACACTTCAAGTCAGGCTGCCAGATGGCACC 1494
||||||||||| || |||||||||||||| ||||||| ||| || |||||||||||||||
Sbjct 1447 GAGCCACCAGCAGGTGAAGAGAACGCCATCACACTTCTAGTTAGACTGCCAGATGGCACC 1506
Query 1495 CGTCATGGCCGCCGGTTCTTTAAATCCGACAAACTCCAATCACTTTTCGACTTTATAGAC 1554
|| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1507 CGCCATGGCCGCCGGTTCCTTAAATCCGACAAACTTCAATCACTTTTCGACTTTATAGAC 1566
Query 1555 ATCTGTAGAGTTGTGAAGCCCAACACTTATAGGCTGGTAAGGCCATATCCTCGGCGTGCT 1614
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1567 ATCTGTAGAGTTGTGAAGCCCAACACTTACAGGCTGGTAAGGCCATATCCTCGGCATGCT 1626
Query 1615 TTTGGAGATGGAGAATGCTCATCGACTCTAAACGATATCGGTTTAACGAGCAAACAAGAA 1674
||||||||||| |||||||| ||||||||| ||||| |||| ||||||||||||||||||
Sbjct 1627 TTTGGAGATGGGGAATGCTCGTCGACTCTACACGATGTCGGCTTAACGAGCAAACAAGAA 1686
Query 1675 GCATTGTTCTTGGAGCTGATCTAGAATTGGTATTATTCTATTGGGGTTACATAATTTATT 1734
||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |||||
Sbjct 1687 GCATTGTTCTTGGAGCTGATCTAAAATTGGT-T-ATTCTATTGGGGCTACATAACTTATT 1744
Query 1735 CTTTTATATGTCTTCTTCTTTTTCTTCGTAGAATTTGTTACTCCCTAAACATTTATTGGT 1794
|||||| |||||||||||||||||||||||||| ||||||||| |||| |||| ||| |
Sbjct 1745 CTTTTAAATGTCTTCTTCTTTTTCTTCGTAGAAGTTGTTACTCTTTAAATATTTTTTGTT 1804
Query 1795 CTATTTAATCCAAGGCTGGCTTTT 1818
|||||||||||| ||||||||||
Sbjct 1805 TTATTTAATCCAAAGCTGGCTTTT 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5