BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23050.2 Length=2811 Score E Sequences producing significant alignments: (Bits) Value Ahg889863 jgi|Araly1|889863|Al_scaffold_0007_1849 3214 0.0 > Ahg889863 jgi|Araly1|889863|Al_scaffold_0007_1849 Length=2175 Score = 3214 bits (1740), Expect = 0.0 Identities = 1928/2021 (95%), Gaps = 4/2021 (0%) Strand=Plus/Plus Query 245 GCGGAGGCGGCGGATTCCTGGGATAATCCGACGGCGACTTGGGAGAGAGCTGTTTCAGGA 304 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 157 GCGGAGGCGGCGGATTCCTGGGTTAATCCGACGGCGACTTGGGAGAGAGCAGTTTCAGGA 216 Query 305 TTCTATTTCGCTGATAGTGCGTATCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 364 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 217 TTCTATTTCGCTGATAGTGCGTACCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 276 Query 365 GTAACATCAGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 424 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 GTAACTTCTGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 336 Query 425 CATTGGTATGCTGAGGAAGTTGTTGGCTACAGAACTATTGATGTGCTTGTAACCGAAGAA 484 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 337 CACTGGTATGCTGAGGAAGTTGTTGGCTACAGAACAATTGATGTGCTTGTAACCGAAGAA 396 Query 485 TACCGTAATTCCCTTACTGGTATCAGGAATAGGGTGTGCCGTGGAGAGACTTGGACTGGT 544 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 397 TACCGTAATTCCCTTACTGGTATCAGGAACAGGGTTTGCCGTGGCGAGACTTGGACTGGT 456 Query 545 CAGTTTCCGTTTCAGAAGAAAACTGGTGAACTATTTATGGCTTTGGTGACTAAAAGCCCT 604 ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 457 CAGTTTCCGTTTCAGAAGAAAACAGGTGAACTATTCATGGCGTTGGTGACTAAAAGCCCT 516 Query 605 GTGTATGAAAACGGTGAGCTGGTTGGTGTTGTTACTGTCTCGAGCGATGCAACCCTTTTC 664 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 517 GTGTATGAAAATGGTGAGCTGGTTGGTGTCGTTACTGTCTCGAGCGATGCAACACTTTTC 576 Query 665 AATAGGATGCATCCACTAAGTAATGAGCATCAACAACAAGCTCGTAGTAATAATAGACAT 724 ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| Sbjct 577 AATAGGATGCATCCATTAAGTAATGACCATCAACAGCAAGCTCGTAGTAATAATAGACAT 636 Query 725 GAATCAAACTTGAGAAAACATCAGTGGCACCTCCCGAGGCCTCAGATCGCTGCAGCATCA 784 ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||| Sbjct 637 GAATCAAACTTCAGAAAGCATCAGTGGCACCTCCCGAGGCCCCAGATCGCTGCAGGATCA 696 Query 785 CAGGTTCCAGTTGTCCCACAATATTCATCAGCTGTTGCTTCAAACCTGAAGGCGTCGAAG 844 ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 697 CAGGTTCCAGTTGTCCCACCGTATTCATCAGCTGTTATTTCAAACCTGAAGGCTTCGAAG 756 Query 845 CTTCTACCACAGAGAAATGGAGATGATTCCTTCAATGGAAATCATAATTCGAGGAGCCGA 904 ||| |||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||| Sbjct 757 CTTTTACCTCAGAGAAATGGAGATGATTCCTTCAATGCAAATCAAAATTCTAGGAGCCGA 816 Query 905 GATGAAAATGTTCCGGTTGTTGCCTCCACAACTTTCGAGAAGTATGGCTCACTGGCGGAT 964 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 817 GATGAAAATGTTCCGGTTGTTGCCTCTTCAACTTTCGAGAAGTATGGCTCACTGGCGGAT 876 Query 965 AAGTTTTTGGGGAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAACCGAAGATAATGAG 1024 ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 877 AAGTTTTTGGGAAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAAATGAAGATAATGAG 936 Query 1025 CCTATCTTAAGAAACGGTATCAATAAGTCAGCATGTGGCAGTGGAGGTAGTTCTAAGGCT 1084 ||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||| Sbjct 937 CCTCTCTTAGGAAACGGTATAAATAAGTCAGCATGTGGCAGTGGAGCTAGTTCTAAAGCT 996 Query 1085 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 997 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1056 Query 1145 GAAGTTAGAATTTCAGATGTCTATGGAAATGGAGCTGAGGGTTTGATACATAATGGAGAT 1204 ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1057 GAAGTTAGATTTTCAGATGTCTATGGGAATGGAGCTGAGGGTTTGATACACAATGGAGAC 1116 Query 1205 CGCTTTCAGTATATTGGGAACCTGGGACAAAGTAAACCTCCCAGAGGACTAGAGAGTGGT 1264 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1117 CGCTTTCAGTATATTGGGAACCTGGGACAAGGGAAACCTCCCAGAGGACTAGAGAGTGGT 1176 Query 1265 TTGGTGTCTGGCATGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1324 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 TTGGTGTCTGGCGTGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1236 Query 1325 TGGAATACTCGTCTTAGTGTTGATCCCTTGCCAATTCTAGGAGTCAACAGCGGTAGGCAA 1384 ||||||||||||| ||||| ||||||||||||||||| || || |||| |||||||| | Sbjct 1237 TGGAATACTCGTCCTAGTGACGATCCCTTGCCAATTCTTGGGGTTAACATCGGTAGGCGA 1296 Query 1385 CAAAGTCCTGTC-AACCAAAGGAATAATAGATTAGTTACTGATTCGTCATGTGAGATACG 1443 |||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 1297 CAAAGTCCTG-CTAACCAAGGGAATAATAGATTAGTTACCAATTCGTCATGTGAGATACG 1355 Query 1444 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGAAGAGGTTCATTTGCTGCGGTTCATCG 1503 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1356 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGACGAGGTTCATTTGCTGCGGTTCATCG 1415 Query 1504 TGGAGTTTGGAATGGATCGGATGTTGCTATTAAGGTTTACTTCGATGGTGATTACAATGC 1563 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1416 TGGAGTTTGGAATGGATCAGATGTTGCTATTAAGGTTTACTTCGAGGGTGATTACAATGC 1475 Query 1564 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1476 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1535 Query 1624 TGTGCTACTATTTATGGGAGCAGTATGTACAGAAGAAAAATCTGCCATAATCATGGAATA 1683 |||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 1536 TGTGCTGTTATTTATGGGCGCGGTATGTACAGAAGAAAAATCTGCCATAATCATGGAGTA 1595 Query 1684 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAGCCATTGGACAAGAA 1743 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1596 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAACCATTGGACAAGAA 1655 Query 1744 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1656 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1715 Query 1804 TCCGCCAATTGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGACAAG-AACTGGA 1862 ||||||||| ||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 1716 TCCGCCAATAGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGAC-AGAAATTGGA 1774 Query 1863 ATGTCAAGGTTGGAGACTTTGGGTTATCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1922 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1775 ATGTCAAGGTTGGAGACTTTGGGTTGTCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1834 Query 1923 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1835 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1894 Query 1983 ATGAGAAGTGTGATGTGTTCAGCTTTGGAGTCATCTTATGGGAGCTAATGACTACGTTAG 2042 |||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||| Sbjct 1895 ATGAGAAGTGTGATGTATTTAGCTTTGGTGTCATCTTATGGGAGCTAATGACTACTTTAA 1954 Query 2043 TACCATGGGACCGTTTGAACTCTATTCAGGTTGTTGGAGTTGTTGGTTTCATGGATCGAC 2102 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1955 TACCATGGGACCGTTTAAACTCTATTCAGGTTGTTGGAGTTGTTGGGTTCATGGATCGAC 2014 Query 2103 GATTAGACTTACCTGAAGGATTAAATCCCCGGATCGCATCCATAATACAGGATTGTTGGC 2162 | ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 2015 GTTTAGACTTACCAGAAGGTTTAAATCCCCGGATCGCATCCATAATACAGGATTGCTGGC 2074 Query 2163 AAACTGATCCAGCAAAACGACCGTCGTTCGAGGAATTAATTAGTCAGATGATGAGCCTGT 2222 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 2075 AAACTGATCCAGCAAAACGACCGTCGTTTGAGGAACTAATTAGTCAGATGATGAGCCTGT 2134 Query 2223 TCCGCAAACCAGGGTCAGGTGCGCAAGAAGAAGACGATTGA 2263 |||||||||| |||||||||| ||||||||| ||||||||| Sbjct 2135 TCCGCAAACCGGGGTCAGGTGTGCAAGAAGACGACGATTGA 2175 Score = 241 bits (130), Expect = 3e-62 Identities = 142/148 (96%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 53 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGG 112 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGA 60 Query 113 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTTGATGACTTATTGCTTCAGGAGGAG 172 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| Sbjct 61 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTGGAGGACTTATTGCTTCAGGATGAG 120 Query 173 AGTCGAACCGGTAAGGAATCGGCGACGG 200 ||||||||||| |||||||||||| ||| Sbjct 121 AGTCGAACCGGCAAGGAATCGGCGGCGG 148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 106081332325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5