BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23050.2
Length=2811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889863 jgi|Araly1|889863|Al_scaffold_0007_1849 3214 0.0
> Ahg889863 jgi|Araly1|889863|Al_scaffold_0007_1849
Length=2175
Score = 3214 bits (1740), Expect = 0.0
Identities = 1928/2021 (95%), Gaps = 4/2021 (0%)
Strand=Plus/Plus
Query 245 GCGGAGGCGGCGGATTCCTGGGATAATCCGACGGCGACTTGGGAGAGAGCTGTTTCAGGA 304
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 157 GCGGAGGCGGCGGATTCCTGGGTTAATCCGACGGCGACTTGGGAGAGAGCAGTTTCAGGA 216
Query 305 TTCTATTTCGCTGATAGTGCGTATCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 217 TTCTATTTCGCTGATAGTGCGTACCGGACTTTGATGGATTCAATGGGACACGCGATTCAT 276
Query 365 GTAACATCAGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 424
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GTAACTTCTGCTGCGTCTGGAGAAATTACATTCTGGAGTCGTTCTGCTGAGAATCTGTAC 336
Query 425 CATTGGTATGCTGAGGAAGTTGTTGGCTACAGAACTATTGATGTGCTTGTAACCGAAGAA 484
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 337 CACTGGTATGCTGAGGAAGTTGTTGGCTACAGAACAATTGATGTGCTTGTAACCGAAGAA 396
Query 485 TACCGTAATTCCCTTACTGGTATCAGGAATAGGGTGTGCCGTGGAGAGACTTGGACTGGT 544
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 397 TACCGTAATTCCCTTACTGGTATCAGGAACAGGGTTTGCCGTGGCGAGACTTGGACTGGT 456
Query 545 CAGTTTCCGTTTCAGAAGAAAACTGGTGAACTATTTATGGCTTTGGTGACTAAAAGCCCT 604
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 457 CAGTTTCCGTTTCAGAAGAAAACAGGTGAACTATTCATGGCGTTGGTGACTAAAAGCCCT 516
Query 605 GTGTATGAAAACGGTGAGCTGGTTGGTGTTGTTACTGTCTCGAGCGATGCAACCCTTTTC 664
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 517 GTGTATGAAAATGGTGAGCTGGTTGGTGTCGTTACTGTCTCGAGCGATGCAACACTTTTC 576
Query 665 AATAGGATGCATCCACTAAGTAATGAGCATCAACAACAAGCTCGTAGTAATAATAGACAT 724
||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 577 AATAGGATGCATCCATTAAGTAATGACCATCAACAGCAAGCTCGTAGTAATAATAGACAT 636
Query 725 GAATCAAACTTGAGAAAACATCAGTGGCACCTCCCGAGGCCTCAGATCGCTGCAGCATCA 784
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 637 GAATCAAACTTCAGAAAGCATCAGTGGCACCTCCCGAGGCCCCAGATCGCTGCAGGATCA 696
Query 785 CAGGTTCCAGTTGTCCCACAATATTCATCAGCTGTTGCTTCAAACCTGAAGGCGTCGAAG 844
||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 697 CAGGTTCCAGTTGTCCCACCGTATTCATCAGCTGTTATTTCAAACCTGAAGGCTTCGAAG 756
Query 845 CTTCTACCACAGAGAAATGGAGATGATTCCTTCAATGGAAATCATAATTCGAGGAGCCGA 904
||| |||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 757 CTTTTACCTCAGAGAAATGGAGATGATTCCTTCAATGCAAATCAAAATTCTAGGAGCCGA 816
Query 905 GATGAAAATGTTCCGGTTGTTGCCTCCACAACTTTCGAGAAGTATGGCTCACTGGCGGAT 964
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 817 GATGAAAATGTTCCGGTTGTTGCCTCTTCAACTTTCGAGAAGTATGGCTCACTGGCGGAT 876
Query 965 AAGTTTTTGGGGAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAACCGAAGATAATGAG 1024
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 877 AAGTTTTTGGGAAAGCTGCAAAGGAAGATTACTGGCAGCCAAGGAAATGAAGATAATGAG 936
Query 1025 CCTATCTTAAGAAACGGTATCAATAAGTCAGCATGTGGCAGTGGAGGTAGTTCTAAGGCT 1084
||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct 937 CCTCTCTTAGGAAACGGTATAAATAAGTCAGCATGTGGCAGTGGAGCTAGTTCTAAAGCT 996
Query 1085 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TCTAATGCAGTTACCTGCACGGCTTTCAGAGACAATGGCAATGGAAAACCAAAAAGGGCT 1056
Query 1145 GAAGTTAGAATTTCAGATGTCTATGGAAATGGAGCTGAGGGTTTGATACATAATGGAGAT 1204
||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1057 GAAGTTAGATTTTCAGATGTCTATGGGAATGGAGCTGAGGGTTTGATACACAATGGAGAC 1116
Query 1205 CGCTTTCAGTATATTGGGAACCTGGGACAAAGTAAACCTCCCAGAGGACTAGAGAGTGGT 1264
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1117 CGCTTTCAGTATATTGGGAACCTGGGACAAGGGAAACCTCCCAGAGGACTAGAGAGTGGT 1176
Query 1265 TTGGTGTCTGGCATGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1324
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TTGGTGTCTGGCGTGCGGGGAACAAAAATGTCGGACCTAAATGGTGAGATAGAAGATGCT 1236
Query 1325 TGGAATACTCGTCTTAGTGTTGATCCCTTGCCAATTCTAGGAGTCAACAGCGGTAGGCAA 1384
||||||||||||| ||||| ||||||||||||||||| || || |||| |||||||| |
Sbjct 1237 TGGAATACTCGTCCTAGTGACGATCCCTTGCCAATTCTTGGGGTTAACATCGGTAGGCGA 1296
Query 1385 CAAAGTCCTGTC-AACCAAAGGAATAATAGATTAGTTACTGATTCGTCATGTGAGATACG 1443
|||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1297 CAAAGTCCTG-CTAACCAAGGGAATAATAGATTAGTTACCAATTCGTCATGTGAGATACG 1355
Query 1444 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGAAGAGGTTCATTTGCTGCGGTTCATCG 1503
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1356 ATGGGAAGATCTACAACTTGGGGAGGAGGTCGGACGAGGTTCATTTGCTGCGGTTCATCG 1415
Query 1504 TGGAGTTTGGAATGGATCGGATGTTGCTATTAAGGTTTACTTCGATGGTGATTACAATGC 1563
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1416 TGGAGTTTGGAATGGATCAGATGTTGCTATTAAGGTTTACTTCGAGGGTGATTACAATGC 1475
Query 1564 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GATGACTTTGACGGAGTGCAAAAAGGAGATCAACATTATGAAGAAACTGAGACATCCGAA 1535
Query 1624 TGTGCTACTATTTATGGGAGCAGTATGTACAGAAGAAAAATCTGCCATAATCATGGAATA 1683
|||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1536 TGTGCTGTTATTTATGGGCGCGGTATGTACAGAAGAAAAATCTGCCATAATCATGGAGTA 1595
Query 1684 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAGCCATTGGACAAGAA 1743
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1596 TATGCCAAGAGGGAGTCTCTTCAAAATACTTCATAATACGAATCAACCATTGGACAAGAA 1655
Query 1744 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1656 ACGCCGTTTAAGAATGGCCCTTGATGTTGCTAGGGGAATGAATTACTTACACCGCAGAAA 1715
Query 1804 TCCGCCAATTGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGACAAG-AACTGGA 1862
||||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1716 TCCGCCAATAGTACATAGAGACTTGAAATCTTCCAATCTACTCGTGGAC-AGAAATTGGA 1774
Query 1863 ATGTCAAGGTTGGAGACTTTGGGTTATCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1922
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1775 ATGTCAAGGTTGGAGACTTTGGGTTGTCAAAGTGGAAGAACGCAACCTTCTTGAGTACTA 1834
Query 1923 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 AATCCGGGAAAGGAACTCCGCAGTGGATGGCTCCTGAAGTTCTCAGAAGTGAACCTTCGA 1894
Query 1983 ATGAGAAGTGTGATGTGTTCAGCTTTGGAGTCATCTTATGGGAGCTAATGACTACGTTAG 2042
|||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||
Sbjct 1895 ATGAGAAGTGTGATGTATTTAGCTTTGGTGTCATCTTATGGGAGCTAATGACTACTTTAA 1954
Query 2043 TACCATGGGACCGTTTGAACTCTATTCAGGTTGTTGGAGTTGTTGGTTTCATGGATCGAC 2102
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1955 TACCATGGGACCGTTTAAACTCTATTCAGGTTGTTGGAGTTGTTGGGTTCATGGATCGAC 2014
Query 2103 GATTAGACTTACCTGAAGGATTAAATCCCCGGATCGCATCCATAATACAGGATTGTTGGC 2162
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2015 GTTTAGACTTACCAGAAGGTTTAAATCCCCGGATCGCATCCATAATACAGGATTGCTGGC 2074
Query 2163 AAACTGATCCAGCAAAACGACCGTCGTTCGAGGAATTAATTAGTCAGATGATGAGCCTGT 2222
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2075 AAACTGATCCAGCAAAACGACCGTCGTTTGAGGAACTAATTAGTCAGATGATGAGCCTGT 2134
Query 2223 TCCGCAAACCAGGGTCAGGTGCGCAAGAAGAAGACGATTGA 2263
|||||||||| |||||||||| ||||||||| |||||||||
Sbjct 2135 TCCGCAAACCGGGGTCAGGTGTGCAAGAAGACGACGATTGA 2175
Score = 241 bits (130), Expect = 3e-62
Identities = 142/148 (96%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 53 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGG 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGGAAACAACTCGGAATCGAGTCTCTACCAGGTTTTGGTGGAGTGGTGTCAGAGA 60
Query 113 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTTGATGACTTATTGCTTCAGGAGGAG 172
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 61 ATGGAGACGAGTCAAGCGAGACTAAGGGAGGATGTGGAGGACTTATTGCTTCAGGATGAG 120
Query 173 AGTCGAACCGGTAAGGAATCGGCGACGG 200
||||||||||| |||||||||||| |||
Sbjct 121 AGTCGAACCGGCAAGGAATCGGCGGCGG 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106081332325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5